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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0112400 |
| Transcript ID | LotjaGi1g1v0112400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Exocyst complex component, putative; TAIR: AT5G58430.1 exocyst subunit exo70 family protein B1; Swiss-Prot: sp|Q9FGH9|E70B1_ARATH Exocyst complex component EXO70B1; TrEMBL-Plants: tr|A0A0R0GS25|A0A0R0GS25_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0112400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:17602174..17604757) extracted from Lotus japonicus Gifu genome v1.2.
CTTGTACTAGGTGATAATTATTTGGCTTATTTTATTCCTTTCTTTGAAATTTTATGTCCATTAAAATGGAGGATTTCTCA TCCTTAAACAAAAACTATGGCAGGTTGTCTGTGAAAGCAATTCTTAGTCACTTGAGAGAAAAGATGATACCCGTTCTCAT TCAAACTCAGAGTTGGATATTACAGCCAAAATTATGGAGATTTTTGGGTTTCGGTTCATCAATTATTGGACTCTTTTGCT ATGCTTTCAGCTCCTCCTTCAACCATCTATTTGGACAGTGGACTTTCTTGAAGATATTTCTCTATAGCATTTTCAGTCTC ATAATCTCATTGACAATTTTGTTTCCAAACACATGGCAACACTCAAGAAGTCACAGGTTCAAAGCTCACTCAGCTTTTTT AGTTTTGACAATCACCACAGTCTATTCCTTTTTATCAGATAAAGTGGTGAATAATGGAATACCAGATGCATATAGCCTCA TTTCAAGTGCTGCCTTTGCCATCATGTCAGTGAGTTTGTCAAGACAGATTCAATGTGGATTTGAAGTTGATCTTCTTTAC TTTTTTCTAGGATGTCTAATGATGCAACTCATGAAGATTAAATTGCAGTTAGTTATTGTTGGGGCTTGTTTCAGCTATTG CCTTATTATTCTTCGTTCTTCATTTTCATCAATGGGTGTCGCCGCCTCAGCAGAAAATGTGTTACCTGGACTAGTCCAAG ATGAACAAGTTATTGTCATTCAGGTAGATTCTTCTCAACATCAGGTGAATACAGATAATTGTAGCATCACGCAGCGGCGG CTAATGAATTGTATGAAGGAGCTTCAGCAGAACAATTCAAACCTCACATACATACTTCTGAAGCAGGTGAAAGAGTACAT TGAAGATAACTCTGAATTGGCGGTGACCGACCATAATTTCATCATGGACGCGCTGCCGCCGGAATTGATGAACAACCTTC AGGAAACCGCCAAGTTGGTGGTGGATGCTGGGTTGGAAAAGGAGTTCTCCGAAGCCTACAGCAATTGGTGGAGGGAATTT CTAGAAGAGTGCCTGATAAACAAAGTATTAGGCTTGAGAAAGATGGGATTTCAAGATTACATGATTGGAAGATGGATCAA AGCTTCTAAAGTAGCTCTGAGGATAATTTTTCCGGGCGGACGGAGACTCTGGGACCAGGTGTTCTCTGCATTCTCCTCCT CGGCCGCCTCTGATCTTTGTTTCTCAGAGGTTTGCCGAGGAGCCGCGATTCAGCTTCTGAATTTTGCTAATGCGTTTGCT AACAGGAGCCCTTCAGCTTGGCGTTTGTTTAGGATCCTGGACATGTTTCAGGCACTTGATGGCCTAATTCCGCAGTTTCA ATCACTTTTTACTGACTCTTTGGTGAATGAAGCTATGAGAACTCAGAAGAGATTGGGAGAAGCAAGCAGGGACATTTTCA TGGAATTCGCGAATCTAATTTTCGACATTCCTGAAGCAGATTTAGATGCTTGGGATAATGGTGGGGTTCATCTAATGACC ACCATTGGTGTCACAGAATACTTAATTCCTGCATTTTGGTCAAGGCAAATTCTAGAGCAAATTTTACTAGAATTCCCAAT TTCTGATGGAGCTGGAACATCTTCATTCTCCTTGCAGATGGAGTGGATAATGGAGCAATTTGAAGGAAAATTGGAAGATA AGTCCAAAATATACAAAGATCCTGCTTTGTGCTATTTTTTCATGATGAATAATATGAGGTACATTGATAGCCAATTGGGA ACAACCTTGGGGGATGATAGGTTCCAAAAGAAGGCACAGCAGAACTTTGAACTCTATTGTAGAAGCTCTTGGAGCAATGT GTTGGAATTTTTGAAGCTGGACATTGATGAGTCATGGGATTCTAATGTTGCAGCAAAGTCAATGATAGAAAAGCTCAATC TGTTCTATCAGCACTTTAAGGAGGTCTGTGGTGTTCAATCAACATGGCGTGTATGTGATAAGCAGCTGAGGAAACAAATA ATAGAGTCTGTTGAAAACATGTTGTTGCCTGCATATAGGAATTTCATTGAGCAGTTTAAGGATGTTCTTGGTAGGCAGAG TGATGAGTTTATCAAGTATGAAATGTGTGACATTCAAGGTATGCTGAACTCAACTATTTGTTTCGTAGGATCATGCTGAA GTATTAGACTTTAGAGGCATAATTCTACCCCGAAGTTAGCTTGAATTGAAGATTGTCTTCTCGTATATAAGAGCTATCTT GATGATGTCTTTAGTCAATATGAGATCTCTGAACACACCCCTCACGTCCATACTGGATATATGAAGTGTGAGATTCACAG GAAAGAACATTTGTGAGTGACTCATATGTGGATAGTCTCCAATAAACAATATAAGATAAACTCAATTGGAATTCAGGTTA GATCTAACTCTACCTTAATAGAATGGCTAAGGTGCACCTTATATGAAGGAAGAATTACAAAATTTTAATTATATGTATTC CGCGTGGAACCATTAAGGCATATTTCATTTTCATCTTCTTACATTTTAGCTAAGCTCGATTCATTTCCTAGTTGAAATTA CATGATGAGTTTGGTTTCTCCCTT
CDS sequence (LotjaGi1g1v0112400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCATTAAAATGGAGGATTTCTCATCCTTAAACAAAAACTATGGCAGGTTGTCTGTGAAAGCAATTCTTAGTCACTT GAGAGAAAAGATGATACCCGTTCTCATTCAAACTCAGAGTTGGATATTACAGCCAAAATTATGGAGATTTTTGGGTTTCG GTTCATCAATTATTGGACTCTTTTGCTATGCTTTCAGCTCCTCCTTCAACCATCTATTTGGACAGTGGACTTTCTTGAAG ATATTTCTCTATAGCATTTTCAGTCTCATAATCTCATTGACAATTTTGTTTCCAAACACATGGCAACACTCAAGAAGTCA CAGGTTCAAAGCTCACTCAGCTTTTTTAGTTTTGACAATCACCACAGTCTATTCCTTTTTATCAGATAAAGTGGTGAATA ATGGAATACCAGATGCATATAGCCTCATTTCAAGTGCTGCCTTTGCCATCATGTCAGTGAGTTTGTCAAGACAGATTCAA TGTGGATTTGAAGTTGATCTTCTTTACTTTTTTCTAGGATGTCTAATGATGCAACTCATGAAGATTAAATTGCAGTTAGT TATTGTTGGGGCTTGTTTCAGCTATTGCCTTATTATTCTTCGTTCTTCATTTTCATCAATGGGTGTCGCCGCCTCAGCAG AAAATGTGTTACCTGGACTAGTCCAAGATGAACAAGTTATTGTCATTCAGGTAGATTCTTCTCAACATCAGGTGAATACA GATAATTGTAGCATCACGCAGCGGCGGCTAATGAATTGTATGAAGGAGCTTCAGCAGAACAATTCAAACCTCACATACAT ACTTCTGAAGCAGGTGAAAGAGTACATTGAAGATAACTCTGAATTGGCGGTGACCGACCATAATTTCATCATGGACGCGC TGCCGCCGGAATTGATGAACAACCTTCAGGAAACCGCCAAGTTGGTGGTGGATGCTGGGTTGGAAAAGGAGTTCTCCGAA GCCTACAGCAATTGGTGGAGGGAATTTCTAGAAGAGTGCCTGATAAACAAAGTATTAGGCTTGAGAAAGATGGGATTTCA AGATTACATGATTGGAAGATGGATCAAAGCTTCTAAAGTAGCTCTGAGGATAATTTTTCCGGGCGGACGGAGACTCTGGG ACCAGGTGTTCTCTGCATTCTCCTCCTCGGCCGCCTCTGATCTTTGTTTCTCAGAGGTTTGCCGAGGAGCCGCGATTCAG CTTCTGAATTTTGCTAATGCGTTTGCTAACAGGAGCCCTTCAGCTTGGCGTTTGTTTAGGATCCTGGACATGTTTCAGGC ACTTGATGGCCTAATTCCGCAGTTTCAATCACTTTTTACTGACTCTTTGGTGAATGAAGCTATGAGAACTCAGAAGAGAT TGGGAGAAGCAAGCAGGGACATTTTCATGGAATTCGCGAATCTAATTTTCGACATTCCTGAAGCAGATTTAGATGCTTGG GATAATGGTGGGGTTCATCTAATGACCACCATTGGTGTCACAGAATACTTAATTCCTGCATTTTGGTCAAGGCAAATTCT AGAGCAAATTTTACTAGAATTCCCAATTTCTGATGGAGCTGGAACATCTTCATTCTCCTTGCAGATGGAGTGGATAATGG AGCAATTTGAAGGAAAATTGGAAGATAAGTCCAAAATATACAAAGATCCTGCTTTGTGCTATTTTTTCATGATGAATAAT ATGAGGTACATTGATAGCCAATTGGGAACAACCTTGGGGGATGATAGGTTCCAAAAGAAGGCACAGCAGAACTTTGAACT CTATTGTAGAAGCTCTTGGAGCAATGTGTTGGAATTTTTGAAGCTGGACATTGATGAGTCATGGGATTCTAATGTTGCAG CAAAGTCAATGATAGAAAAGCTCAATCTGTTCTATCAGCACTTTAAGGAGGTCTGTGGTGTTCAATCAACATGGCGTGTA TGTGATAAGCAGCTGAGGAAACAAATAATAGAGTCTGTTGAAAACATGTTGTTGCCTGCATATAGGAATTTCATTGAGCA GTTTAAGGATGTTCTTGGTAGGCAGAGTGATGAGTTTATCAAGTATGAAATGTGTGACATTCAAGGTATGCTGAACTCAA CTATTTGTTTCGTAGGATCATGCTGA
Protein sequence (LotjaGi1g1v0112400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSIKMEDFSSLNKNYGRLSVKAILSHLREKMIPVLIQTQSWILQPKLWRFLGFGSSIIGLFCYAFSSSFNHLFGQWTFLK IFLYSIFSLIISLTILFPNTWQHSRSHRFKAHSAFLVLTITTVYSFLSDKVVNNGIPDAYSLISSAAFAIMSVSLSRQIQ CGFEVDLLYFFLGCLMMQLMKIKLQLVIVGACFSYCLIILRSSFSSMGVAASAENVLPGLVQDEQVIVIQVDSSQHQVNT DNCSITQRRLMNCMKELQQNNSNLTYILLKQVKEYIEDNSELAVTDHNFIMDALPPELMNNLQETAKLVVDAGLEKEFSE AYSNWWREFLEECLINKVLGLRKMGFQDYMIGRWIKASKVALRIIFPGGRRLWDQVFSAFSSSAASDLCFSEVCRGAAIQ LLNFANAFANRSPSAWRLFRILDMFQALDGLIPQFQSLFTDSLVNEAMRTQKRLGEASRDIFMEFANLIFDIPEADLDAW DNGGVHLMTTIGVTEYLIPAFWSRQILEQILLEFPISDGAGTSSFSLQMEWIMEQFEGKLEDKSKIYKDPALCYFFMMNN MRYIDSQLGTTLGDDRFQKKAQQNFELYCRSSWSNVLEFLKLDIDESWDSNVAAKSMIEKLNLFYQHFKEVCGVQSTWRV CDKQLRKQIIESVENMLLPAYRNFIEQFKDVLGRQSDEFIKYEMCDIQGMLNSTICFVGSC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 46 | 46 | - | – | |
| PANTHER | 42 | 692 | 651 | 2.7E-195 | – | |
| PANTHER | 42 | 692 | 651 | 2.7E-195 | ||
| Phobius | 47 | 66 | 20 | - | – | |
| TMHMM | 47 | 69 | 23 | - | – | |
| Phobius | 67 | 77 | 11 | - | – | |
| TMHMM | 74 | 96 | 23 | - | – | |
| Phobius | 78 | 97 | 20 | - | – | |
| Phobius | 98 | 108 | 11 | - | – | |
| Phobius | 109 | 127 | 19 | - | – | |
| TMHMM | 109 | 126 | 18 | - | – | |
| Phobius | 128 | 138 | 11 | - | – | |
| TMHMM | 136 | 155 | 20 | - | – | |
| Phobius | 139 | 155 | 17 | - | – | |
| Phobius | 156 | 166 | 11 | - | – | |
| TMHMM | 167 | 189 | 23 | - | – | |
| Phobius | 167 | 200 | 34 | - | – | |
| Phobius | 201 | 701 | 501 | - | – | |
| Gene3D | 225 | 695 | 471 | 4.0E-104 | – | |
| SUPERFAMILY | 249 | 693 | 445 | 2.93E-69 | ||
| Pfam | 353 | 692 | 340 | 2.0E-67 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Exocyst | A protein complex peripherally associated with the plasma membrane that determines where vesicles dock and fuse. At least eight complex components are conserved between yeast and mammals. | ||
| Biological process | Exocytosis | A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle. Exocytosis can occur either by full fusion, when the vesicle collapses into the plasma membrane, or by a kiss-and-run mechanism that involves the formation of a transient contact, a pore, between a granule (for exemple of chromaffin cells) and the plasma membrane. The latter process most of the time leads to only partial secretion of the granule content. Exocytosis begins with steps that prepare vesicles for fusion with the membrane (tethering and docking) and ends when molecules are secreted from the cell. |
Expression pattern of LotjaGi1g1v0112400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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