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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0119400 |
| Transcript ID | LotjaGi1g1v0119400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G19720.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q9FXH1|PPR52_ARATH Pentatricopeptide repeat-containing protein At1g19720; TrEMBL-Plants: tr|A0A0B2SMS5|A0A0B2SMS5_GLYSO Pentatricopeptide repeat-containing protein; Found in the gene: LotjaGi1g1v0119400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:18849628..18853133) extracted from Lotus japonicus Gifu genome v1.2.
CTCTTACTCATTGACCTCTCTGAGTTTGTGGCAATTGATCTGACAAGTCATCCTTATGGGACCCCCAAAAGGTCTAGAGA CCCAGAATTGGATGCCCCTAATCTCCATCACCAACACCACCTTATCAGCTCAATCCTCATTTCCACCCATCTCTGCAAGC AAAACACAGAGCAGACTAGGGAGCTTCAAGAACCAGTGGAAAAGGAGTAAAAGTAAGGGACCAAAAAACCCATAATGGAA AAATGCCTCATTATCTTACCCACTAAATCAAGACCTCCTCTTTCAATCCCATCTTACAGTGCCTCCCAATTTGAGTTTAT TGCCTCAACAAGAGTCCATGCAAACTCCAACTATGTATCTATGTCCATAAGGTCACTTCCATACCCAAAATTCATGGATG CCCAGTTGAACCAGTTATGCAGTAATGGCCCCCTGAGTGATGCTGTGGCAATTCTTGACTCCCTGGCTGAACAAGGCTCC AAGGTGAGACCCATCACCTATATGAACTTGCTACAGTCTTGTATTGACAGGGACTGTATTGAGGTGGGTAGAGAGTTGCA TGCTCGGATTGGATTGGTGGGAAATGTGAATCCTTTTGTGGAGACCAAGCTGGTGAGCATGTATTCAAAATGTGGGCATT TGAGTGAGGCACGCAAAGTGTTTGATGAAATGCGTGAGAGGAATTTGTTCACTTGGTCTGCTATGATTGGTGCCTGCTCC AGGGAGAAGAGTTGGGAGGAGGTTGTGGACCTCTTTTATGACATGGTGCGGCATGGTTTCTTGCCTGATGAGTTTTTGCT TCCGAAGATCTTGCAAGCGTGCGGGAAGTGCGGGGATTTGGAGACCGGGAGGTTGATTCATTCGGTGGCGATTCGGCATG GGATGTGCTCTTCCATTCGGGTGAATAATTCAATTATGGCTGTGTATGCTAAGTGTGGGGAGATGGGTTTTGCAAAGAAG CTTTTTAAGAGTATGGATGAGAGAGACAGTGTGACCTGGAATGCAATAATAACTGGGTTTTGCCAGAATGGTGATATTGA ACAAGCTCGGAAATACTTTGATGCAATGCAGGAAGAAGGAGTTGAACCTGGTTTGGTGACTTGGAACATTTTGATTGCTA GTTATAATCAGTTAGGGCGTTGTGATATCGCAATGGATTTAATGAGGAAGATGGAGAGTTTTGGGTTAACTCCAGATGTA TATACTTGGTCTTCTATGATTTCTGGGTTTACTCAAAAGGGTAGGACATATCATGCTTTAGATTTGTTGAGAAAGATGTT ATTATCAGGGGTTGAGCCTAACAGCATTACAGTTGCAAGTGCAGCCTCGGCATGTGCGTCCTTACAATCACTAAGTATGG CTTTAGAAATCCATGGTATTGGTGTTAAGATGAGTTTGGTTGATGATGTGCTAACTGGTAATTCACTGATTGACATGTAT TCCAAGTGCGGGGATCTAGAAGCTGCTCAACGCATTTTTGATATGATGTATGAGAGAGATGTATATTCTTGGAATACAAT TATCGGAGGATATTGCCATGCTGGTTTCTGCGGCAAAGCTTATGAGTTATTTATGAAAATGCAGGACTCTGATTCACCAC CTAATGTAGTTACATGGAATGCATTGATTACAGGATATATGCAGAGTGGTGCTGAGGATCAGGCGTTGGATCTTTTTAAA AGGATTGAGAAAGATGGAAAAATTAAGCGAAACGTAGCATCATGGAATTCATTAATTGCTGGTTTCCTGCAAAGTGGACA AAAGGACAAGGCTATGCAGATATTTCGGCGTATGCAGTTTTTCCAGATAGCTCCTAACTCAGTCACAGTGCTAAGTATCC TTCCTGCCTTTGCAAATTTAGTGGCTGGGAAAAAAGTGAAAGAAATCCATTGTTGTGCCCTACGTAGAAATTTAGTGTCT GAAATTTCAGTGTCAAATATATTAATCGACAGTTATGCTAAGTCAGGAAATTTGATGTATTCCAGACGTATTTTTGATGG ATTGCCATTGAAAGATATCATCAGTTGGAACATTATGCTTTCTGGTTATGTTCTACATGGCAGTTCAGAGTCTGCACTTG ATCTATTTTATCAGATGAGGAAGGAAGGGCTTCAACCAACTAGAGGTACTTTTGCAAGCATCATCTTAGCTTATAGTCAT GCTGGAATGGTGGATGAGGGGACGCGAGTTTTCTCAAGCATTACTGAAGAATACCAGATTAGACCAGGTTTGGAGCATTA TTCTGCTATGGTCTATTTGCTTGGTCGTTCAGGTAAGCTTGCTGAAGCACTGGAGTTTATTCAAAACATGCCTGTTTCAC CGAATTTCTCTGTTTGGCACACCTTGCTGACCGCCTGCAGAGTTCATAGAAATTTTAGACTGGCAATCCTTGCAGCAGAA AGTATGTTTGAGTTGGAACCTGGAAATATTGTAACTCAGTATTTGCTTTCACAGGCATATTCTTTATGTGGCAAGTCATG GGAATCTCCAAAAATGGCAAAGCTGGAGAAAGAAAAAGCTATTAAGAAACCTGTTGGGCAATGCTGGATTGAAAGGAAAA ACACAATCCATACTTTTGTAGTTTGTGATCAATCTCACCCATATTTGGACAAGCTACATTCTTGGCTAAAAGGGGTAGCT GTAAATGTCAAGGCACATATTTCTGACCATGAACTTTGCATTGAGGAAGAGGAGAAGGAAAATAGTAGTAGTGTTGTACA TAGTGAAAAACTTGCATTTGCTTTTGCTCTTATAGACTCTCATCATGCACCTCAAATTCTAAGGATAGTGAAAAATTTGA GAATGTGTAGAGATTGCCACGACACAGCCAAGTACATATCGTTGGCATATGAGTGTGAAATATATTTGAGTGACTCAAAT TGCTTACACCACTTTAAAGGTGGACAATGTTCTTGTAGGGATTATTGGTAGAGCAAAAACAATTGTGAATCAATGATGAA ATATAGAAATCTTTCTTCATATTATTTTACTTGTTCATGATGTGCATATTTAACCATCCACAGAACTGAAGTTTTTGTCC TCGCCTTGTCATATTATGTATCAGGTGAAACCATTAAGAACAACTCCATTGGTTACTATTCAAGTATTTTGTGATGTTTT TCAGATGAAGGATTTGAATGTATATCCTGTTAGTAATTTCCATCAGAAGATGTAAATAAATTATAAAATCAATCATTGTA GTCGTTTCATTTTCATCTGTCAAGTCATAAACTGTCATTCAAAGATGCTTCATTGGCTTTGATTAGTGATGGGAAATATA GTGGAGCTATAAAAGATAGGTAGAATAAAAACTGTCAGCACTATTGGGCATCCACAAAGCTTAGTAGATTCTTCCCTTGA TAGTTTATGAGTAGCACCTTATGAGTAAGCATGGTGTGACTGCGACTAGAAAAAGTTACACAACTGATCAAAAAAGGGTC CAGCATACGCAATTATGATTAGCAATCAGAAACACCAAAGCTGTGCCACTATTGTGAAGGTGCTCC
CDS sequence (LotjaGi1g1v0119400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAAATGCCTCATTATCTTACCCACTAAATCAAGACCTCCTCTTTCAATCCCATCTTACAGTGCCTCCCAATTTGA GTTTATTGCCTCAACAAGAGTCCATGCAAACTCCAACTATGTATCTATGTCCATAAGGTCACTTCCATACCCAAAATTCA TGGATGCCCAGTTGAACCAGTTATGCAGTAATGGCCCCCTGAGTGATGCTGTGGCAATTCTTGACTCCCTGGCTGAACAA GGCTCCAAGGTGAGACCCATCACCTATATGAACTTGCTACAGTCTTGTATTGACAGGGACTGTATTGAGGTGGGTAGAGA GTTGCATGCTCGGATTGGATTGGTGGGAAATGTGAATCCTTTTGTGGAGACCAAGCTGGTGAGCATGTATTCAAAATGTG GGCATTTGAGTGAGGCACGCAAAGTGTTTGATGAAATGCGTGAGAGGAATTTGTTCACTTGGTCTGCTATGATTGGTGCC TGCTCCAGGGAGAAGAGTTGGGAGGAGGTTGTGGACCTCTTTTATGACATGGTGCGGCATGGTTTCTTGCCTGATGAGTT TTTGCTTCCGAAGATCTTGCAAGCGTGCGGGAAGTGCGGGGATTTGGAGACCGGGAGGTTGATTCATTCGGTGGCGATTC GGCATGGGATGTGCTCTTCCATTCGGGTGAATAATTCAATTATGGCTGTGTATGCTAAGTGTGGGGAGATGGGTTTTGCA AAGAAGCTTTTTAAGAGTATGGATGAGAGAGACAGTGTGACCTGGAATGCAATAATAACTGGGTTTTGCCAGAATGGTGA TATTGAACAAGCTCGGAAATACTTTGATGCAATGCAGGAAGAAGGAGTTGAACCTGGTTTGGTGACTTGGAACATTTTGA TTGCTAGTTATAATCAGTTAGGGCGTTGTGATATCGCAATGGATTTAATGAGGAAGATGGAGAGTTTTGGGTTAACTCCA GATGTATATACTTGGTCTTCTATGATTTCTGGGTTTACTCAAAAGGGTAGGACATATCATGCTTTAGATTTGTTGAGAAA GATGTTATTATCAGGGGTTGAGCCTAACAGCATTACAGTTGCAAGTGCAGCCTCGGCATGTGCGTCCTTACAATCACTAA GTATGGCTTTAGAAATCCATGGTATTGGTGTTAAGATGAGTTTGGTTGATGATGTGCTAACTGGTAATTCACTGATTGAC ATGTATTCCAAGTGCGGGGATCTAGAAGCTGCTCAACGCATTTTTGATATGATGTATGAGAGAGATGTATATTCTTGGAA TACAATTATCGGAGGATATTGCCATGCTGGTTTCTGCGGCAAAGCTTATGAGTTATTTATGAAAATGCAGGACTCTGATT CACCACCTAATGTAGTTACATGGAATGCATTGATTACAGGATATATGCAGAGTGGTGCTGAGGATCAGGCGTTGGATCTT TTTAAAAGGATTGAGAAAGATGGAAAAATTAAGCGAAACGTAGCATCATGGAATTCATTAATTGCTGGTTTCCTGCAAAG TGGACAAAAGGACAAGGCTATGCAGATATTTCGGCGTATGCAGTTTTTCCAGATAGCTCCTAACTCAGTCACAGTGCTAA GTATCCTTCCTGCCTTTGCAAATTTAGTGGCTGGGAAAAAAGTGAAAGAAATCCATTGTTGTGCCCTACGTAGAAATTTA GTGTCTGAAATTTCAGTGTCAAATATATTAATCGACAGTTATGCTAAGTCAGGAAATTTGATGTATTCCAGACGTATTTT TGATGGATTGCCATTGAAAGATATCATCAGTTGGAACATTATGCTTTCTGGTTATGTTCTACATGGCAGTTCAGAGTCTG CACTTGATCTATTTTATCAGATGAGGAAGGAAGGGCTTCAACCAACTAGAGGTACTTTTGCAAGCATCATCTTAGCTTAT AGTCATGCTGGAATGGTGGATGAGGGGACGCGAGTTTTCTCAAGCATTACTGAAGAATACCAGATTAGACCAGGTTTGGA GCATTATTCTGCTATGGTCTATTTGCTTGGTCGTTCAGGTAAGCTTGCTGAAGCACTGGAGTTTATTCAAAACATGCCTG TTTCACCGAATTTCTCTGTTTGGCACACCTTGCTGACCGCCTGCAGAGTTCATAGAAATTTTAGACTGGCAATCCTTGCA GCAGAAAGTATGTTTGAGTTGGAACCTGGAAATATTGTAACTCAGTATTTGCTTTCACAGGCATATTCTTTATGTGGCAA GTCATGGGAATCTCCAAAAATGGCAAAGCTGGAGAAAGAAAAAGCTATTAAGAAACCTGTTGGGCAATGCTGGATTGAAA GGAAAAACACAATCCATACTTTTGTAGTTTGTGATCAATCTCACCCATATTTGGACAAGCTACATTCTTGGCTAAAAGGG GTAGCTGTAAATGTCAAGGCACATATTTCTGACCATGAACTTTGCATTGAGGAAGAGGAGAAGGAAAATAGTAGTAGTGT TGTACATAGTGAAAAACTTGCATTTGCTTTTGCTCTTATAGACTCTCATCATGCACCTCAAATTCTAAGGATAGTGAAAA ATTTGAGAATGTGTAGAGATTGCCACGACACAGCCAAGTACATATCGTTGGCATATGAGTGTGAAATATATTTGAGTGAC TCAAATTGCTTACACCACTTTAAAGGTGGACAATGTTCTTGTAGGGATTATTGGTAG
Protein sequence (LotjaGi1g1v0119400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKCLIILPTKSRPPLSIPSYSASQFEFIASTRVHANSNYVSMSIRSLPYPKFMDAQLNQLCSNGPLSDAVAILDSLAEQ GSKVRPITYMNLLQSCIDRDCIEVGRELHARIGLVGNVNPFVETKLVSMYSKCGHLSEARKVFDEMRERNLFTWSAMIGA CSREKSWEEVVDLFYDMVRHGFLPDEFLLPKILQACGKCGDLETGRLIHSVAIRHGMCSSIRVNNSIMAVYAKCGEMGFA KKLFKSMDERDSVTWNAIITGFCQNGDIEQARKYFDAMQEEGVEPGLVTWNILIASYNQLGRCDIAMDLMRKMESFGLTP DVYTWSSMISGFTQKGRTYHALDLLRKMLLSGVEPNSITVASAASACASLQSLSMALEIHGIGVKMSLVDDVLTGNSLID MYSKCGDLEAAQRIFDMMYERDVYSWNTIIGGYCHAGFCGKAYELFMKMQDSDSPPNVVTWNALITGYMQSGAEDQALDL FKRIEKDGKIKRNVASWNSLIAGFLQSGQKDKAMQIFRRMQFFQIAPNSVTVLSILPAFANLVAGKKVKEIHCCALRRNL VSEISVSNILIDSYAKSGNLMYSRRIFDGLPLKDIISWNIMLSGYVLHGSSESALDLFYQMRKEGLQPTRGTFASIILAY SHAGMVDEGTRVFSSITEEYQIRPGLEHYSAMVYLLGRSGKLAEALEFIQNMPVSPNFSVWHTLLTACRVHRNFRLAILA AESMFELEPGNIVTQYLLSQAYSLCGKSWESPKMAKLEKEKAIKKPVGQCWIERKNTIHTFVVCDQSHPYLDKLHSWLKG VAVNVKAHISDHELCIEEEEKENSSSVVHSEKLAFAFALIDSHHAPQILRIVKNLRMCRDCHDTAKYISLAYECEIYLSD SNCLHHFKGGQCSCRDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 50 | 84 | 35 | 5.536 | ||
| Gene3D | 53 | 216 | 164 | 1.8E-29 | ||
| PANTHER | 74 | 211 | 138 | 9.3E-127 | – | |
| ProSiteProfiles | 119 | 149 | 31 | 9.46 | ||
| TIGRFAM | 125 | 150 | 26 | 1.9E-4 | ||
| Pfam | 126 | 150 | 25 | 6.6E-5 | ||
| ProSiteProfiles | 150 | 184 | 35 | 12.211 | ||
| Pfam | 152 | 182 | 31 | 1.0E-6 | ||
| TIGRFAM | 152 | 186 | 35 | 1.7E-8 | ||
| ProSiteProfiles | 185 | 219 | 35 | 6.401 | ||
| PANTHER | 211 | 321 | 111 | 9.3E-127 | – | |
| ProSiteProfiles | 220 | 250 | 31 | 7.399 | ||
| Pfam | 225 | 250 | 26 | 0.01 | ||
| Pfam | 251 | 293 | 43 | 4.7E-13 | ||
| ProSiteProfiles | 251 | 285 | 35 | 14.316 | ||
| TIGRFAM | 253 | 285 | 33 | 5.0E-10 | ||
| SUPERFAMILY | 262 | 519 | 258 | 1.6E-7 | – | |
| Gene3D | 280 | 376 | 97 | 2.2E-24 | ||
| ProSiteProfiles | 286 | 320 | 35 | 11.126 | ||
| TIGRFAM | 288 | 322 | 35 | 4.6E-6 | ||
| Pfam | 320 | 367 | 48 | 3.6E-8 | ||
| ProSiteProfiles | 321 | 355 | 35 | 12.222 | ||
| PANTHER | 322 | 372 | 51 | 9.3E-127 | – | |
| TIGRFAM | 323 | 356 | 34 | 5.9E-7 | ||
| PANTHER | 361 | 460 | 100 | 9.3E-127 | – | |
| Gene3D | 377 | 453 | 77 | 3.2E-16 | ||
| ProSiteProfiles | 391 | 421 | 31 | 9.624 | ||
| TIGRFAM | 396 | 423 | 28 | 0.003 | ||
| Pfam | 422 | 458 | 37 | 4.6E-8 | ||
| ProSiteProfiles | 422 | 456 | 35 | 11.816 | ||
| TIGRFAM | 424 | 458 | 35 | 8.0E-7 | ||
| Gene3D | 454 | 552 | 99 | 1.1E-21 | ||
| ProSiteProfiles | 457 | 491 | 35 | 10.665 | ||
| Pfam | 459 | 488 | 30 | 1.2E-5 | ||
| TIGRFAM | 459 | 488 | 30 | 0.0017 | ||
| PANTHER | 462 | 541 | 80 | 9.3E-127 | – | |
| ProSiteProfiles | 493 | 527 | 35 | 11.542 | ||
| Pfam | 493 | 540 | 48 | 2.1E-9 | ||
| TIGRFAM | 496 | 528 | 33 | 1.9E-5 | ||
| PANTHER | 547 | 757 | 211 | 9.3E-127 | – | |
| ProSiteProfiles | 563 | 593 | 31 | 5.941 | ||
| Pfam | 568 | 588 | 21 | 1.3 | ||
| Gene3D | 570 | 798 | 229 | 4.7E-33 | ||
| Pfam | 593 | 640 | 48 | 2.6E-9 | ||
| ProSiteProfiles | 594 | 628 | 35 | 12.485 | ||
| TIGRFAM | 596 | 629 | 34 | 4.1E-8 | ||
| ProSiteProfiles | 629 | 664 | 36 | 7.618 | ||
| ProSiteProfiles | 665 | 695 | 31 | 7.18 | ||
| Pfam | 668 | 692 | 25 | 0.21 | ||
| Pfam | 768 | 888 | 121 | 1.2E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0119400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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