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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0119800 |
| Transcript ID | LotjaGi1g1v0119800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger CCCH domain protein, putative; TAIR: AT5G58620.1 zinc finger (CCCH-type) family protein; Swiss-Prot: sp|Q9LUZ4|C3H66_ARATH Zinc finger CCCH domain-containing protein 66; TrEMBL-Plants: tr|I1JHD2|I1JHD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0119800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:18891609..18895484) extracted from Lotus japonicus Gifu genome v1.2.
ATAAAGAAAACAATATATAGAGAGAAGAGAAAAGTCTCCTTTTACTTCCTCTCTCTCTCTCTCTAAAGTCTGAAAAGCAG GAGAAAAACCAGAGCTTGCCTTCCTTGCTTTCTGAGTCTGGGACTTGCAATTGCTACAAGGTATGCTTCCTTTGCTCTTG CATGTTTGTTTTCTCTTCTTCTTGATCCTCATGGGTCCTTGAATTTGAGTTTAGAATTGGATCCTGTTTCAGTTTTTGGA CTTCTTTTGTGTTTTTTCCTTGGCTGCTAAGAAAATTTCACAAAAATCATGGGGTTTTGCTTTGAGATTGTTGATTGATG GAGGAAAGCCTTATCTCCAATCCCATGTTAAAAAAATTGCTTTTTTTTGATTGCCCATGAGAGCAACGAAGCACAGGTTG TTTTTGCTGTTTTCTTCTGTCTGCAACGATTTTTGGTTTTTTTGTTACCTGGACTCATGCTAATTTTGATAGGTGTTGGT AGATGAACTATAATTATCTGAAAGAGTGAAGCTTTGTCAATTAAGGGTATGCTTGTTGTGAATTTCTTGGTGATTCATGA TTCTGCAACTCTCCAATTTGTTTGTTTGCTCAACAATCACCTGCATACACAAAATGGGGGAAAATCTGACCCTTAATTTG CCTTTATTTGTTTCCAGTTTGTTATATTGAATTGAGTTTCTGGGCTTTGAATTTGAATGATCATGGTGGGTGTAAATGTA ATAGCATCTTGATTCTTGAACCTGTTTCTTCCTGGGATTTTTCAGATCCTGCTGAGGCCTTAGGTGGGGGGAAAGCGGTT CCGATAAGAAAGCTTCTCAATCTGGTTTCGTCATGGAGAACGAGTATGGAAAACAGGAAGAGCTGCATCATAAGATCTCT GCTTTGCTTGAATTTTCAGCTGCAGATGATCTGATTGGCTTCAAGGATGCTGTTGAAAAGGAGGATCATGATGTTGATGA GGCGGGCTTGTGGTATGGAAGGAGGGTTGGCTCGAATAAATTGGGCTATGAAGAGAGGACTCCTCTCATGGTTGCTGCCA TGTTTGGGAGCCTGGGTGTGTCAATTTATATTCTTGGAACAGGTCGTGTTGATGTTAACCGCGCTAGTCGGTCAGATGGC GCTACTGCTCTTCATTGTGCTGTTGCTGGGGGTTCTGCTGCTTCCCCTGAGGTTGTCAAGCTTTTGCTTGATGCATCTGC TGATGTTCATGCTGTTGATGCCAATGGTAACCGACCCCTCGACTTGATTGCCTCTGTGAATAAGTCTATCTTCAATCCGA GGAAGAGGTTGCTACAAGCCCTACTCGAGGGTACCGGTGATGCTGATCAGGCGTGGCTTATGTTTCCGGAGGCGCTTGAC CAAATTGAGGAGCAGCAAAGACAAGATGTGAGCCCGCCTCGTGTTTCAAGAGATGGGGCTGAGAAGAAAGATTATCCTGC TGATCTCTCCCTTCCGGACATCAAGAATGGGATATATGGAACCGATGAGTTTAGGATGTATGTGTTCAAAGTGAAACCTT GTTCAAGGGCTTATTCTCATGATTGGACTGAGTGCCCCTTTGTTCACCCGGGGGAGAATGCAAGGCGGCGTGATCCAAGG AAATATCCTTATAGCTGCGTCCCTTGTCCTGAGTTTCGGAAAGGATCCTGCAGCAGAGGCGACGCCTGTGAGTATGCACA TGGTATTTTTGAGTGCTGGCTTCACCCTGCCCAGTATCGGACGCGGCTCTGCAAGGAGGAGAGAACATGCACTAGGAGAG TGTGCTTCTTTGCTCACAAGCTGGAGGAGCTTCGCCCCTTGTATGTTTCAACTGGTTCTGCTATTCCTTCTCCCAGGTCA TATTCTGCAAATAATTCTGCATTAGAAATGGGTTCAGTTAGCCCAATTGCATTTGGTTCTCCATCTTCCATGATGCCACC TGTGTCAACACCACCTTTATCTCCATCTGGAGCATCTTCTCCAGTTGCTGGAGGAGCCATGTGGCAGAATGTTTCAGTCC CTGCCCTGCAGCTTCCCAAAAGCAGGTTGAACACTGCATTTGCTGCTAGGGATATTGATTTCGATAATGAATTCCTTAGA CTTGAAATTAATCGACGCAGGCAGCAGCTAATGATGGATGAGGTATCCGGGCTCTCCTCTCCTTCCAACTGGAAAAATTC CATGCCTAGCGGTCAATCTTTTTCTGTTTCTTTGAATGATCATACCGGGGAACTGAATAGGCTTTCAGGGGTCAACCCTG CTAACTTTGAAGACATGTACGGGTCTCTGGATCGATCGGTTTTGGCTCAACTCCATGGACTCTCACTTGATGTTGCAGGG TCTCAGTTACAATCTCCAAGTGGAATGCATCAGATGCGTCCGAATGTGAACCAGCAGCCGCGAAGCTATTCTTCCAGCCT TTCAACTTCAAGTGTGATTGGATCACCACCCTTCAACCCATCTGGGGAAGCAGCTGCTGCAATGGCCTTCAATCCAAGAT CTGCTGCCTTTTCCAAGCGGAGCCAGAGCTTTATCGAGCGCAGCGCAGTGAACCGCCACTCTGAGCTTTCTTCTGCTGCT CCTCCCTTTTCCGTTTGGGGCTCCCCTGATCGAAAACAAGATTGGGGAATGCATGGAGAAGAGTTGAACAAGCTGAGGAA GTCTTCTTCTTTCGGATTTCGAAGCAGCAGCACTCCTTTAGCCATGGCTGCTACAACCGCAGCGCCGGCAGATGTTAATG AACCAGATGTGTCTTGGGTCCAGTCACTTGTGAAGGATGGTGCGCCGTCGGAATCTGGTCGGTTCAGTTTTGAATCTTCT GAGGATCTGCAAAAGCAACTGCAGTTCTACATTAACAGTGGAGCAGATGTGATTCCAGCTTGGTTGGAGCAATTGTACAT GGAGCAGGAGCAAATGGTGGCATGAAAGCATTTTAAGTTCCTTCTAGCAACTCCTCTAAACAGTTAATTCATTTGATGAC TTTTTTGGGGTTTCATTTATAGAATTTATTCAGATGACAACTTGTAAATCGGTGGTAAAAGAGTATAGGATCTGGACAGG ATACAAGTTTCCTGTTCTAGCAGCTACCCTTTACTAGGGTGTGACTTATTCCAGTTTTTCCTGATATTTTTGTTATATGT TGTTCTATTGAGTTGCGACTTTCCATTGACCAAATTACAACTATGTAGTGAGGTTAGTCATCTATCTTTATGTTGATGCT GGATATGCAATAGTTTTTGAAAATGTCAATTCTCAATTTGCATGTCACATTTATGGCCATTTAACTATGTCAGGATGCTT TACTGCAGAAGAATAAGGAAATGGATCCATCATGAGATTTTGTATAATCTTGTGAACTCAAGTTGAGTGTCTATCTCAAT TAATGTTGAATAGACGAGATCCTATTAAAATTTGTACATATGTACAAAGGAAGATATAAAGAACAAGGTACATGTGCCCA GTTGGTTCAAGCGGTACATGTTTGATTCTCTGAAGTAAAGTCTTGAATTTGAGTATTGTGAATGGAAAATACTCTCATTA GGAGAGCTGGTTTCACCATAATGTGAATATTATCGACTCGAACAGAATTTTCTCTCGGGAAGGATACAGGATATTTGAGT TGTTTACCTGTGAGACAATTTTGGTGAGTTTGATTTCTGCGAACAACCATACACGAATGTTTTATGTGGGTCCATTCTAG TTAGATCTTTGATGAGCTAATGTATGTCTACTCACATGCGGCTATTCTATGCATGCCACTTGTGGCGACTAGATAACGCT GCTTTTTGGATTGATTCTACTTTAGTATTTGGATTTGTCCCTTGTCACTTATGTTAAACGTGATTTTGTTGAAACTATTC ATGTCTACGTGGAATTAATTTTGTTTCCAAACTCTG
CDS sequence (LotjaGi1g1v0119800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAACGAGTATGGAAAACAGGAAGAGCTGCATCATAAGATCTCTGCTTTGCTTGAATTTTCAGCTGCAGATGATCT GATTGGCTTCAAGGATGCTGTTGAAAAGGAGGATCATGATGTTGATGAGGCGGGCTTGTGGTATGGAAGGAGGGTTGGCT CGAATAAATTGGGCTATGAAGAGAGGACTCCTCTCATGGTTGCTGCCATGTTTGGGAGCCTGGGTGTGTCAATTTATATT CTTGGAACAGGTCGTGTTGATGTTAACCGCGCTAGTCGGTCAGATGGCGCTACTGCTCTTCATTGTGCTGTTGCTGGGGG TTCTGCTGCTTCCCCTGAGGTTGTCAAGCTTTTGCTTGATGCATCTGCTGATGTTCATGCTGTTGATGCCAATGGTAACC GACCCCTCGACTTGATTGCCTCTGTGAATAAGTCTATCTTCAATCCGAGGAAGAGGTTGCTACAAGCCCTACTCGAGGGT ACCGGTGATGCTGATCAGGCGTGGCTTATGTTTCCGGAGGCGCTTGACCAAATTGAGGAGCAGCAAAGACAAGATGTGAG CCCGCCTCGTGTTTCAAGAGATGGGGCTGAGAAGAAAGATTATCCTGCTGATCTCTCCCTTCCGGACATCAAGAATGGGA TATATGGAACCGATGAGTTTAGGATGTATGTGTTCAAAGTGAAACCTTGTTCAAGGGCTTATTCTCATGATTGGACTGAG TGCCCCTTTGTTCACCCGGGGGAGAATGCAAGGCGGCGTGATCCAAGGAAATATCCTTATAGCTGCGTCCCTTGTCCTGA GTTTCGGAAAGGATCCTGCAGCAGAGGCGACGCCTGTGAGTATGCACATGGTATTTTTGAGTGCTGGCTTCACCCTGCCC AGTATCGGACGCGGCTCTGCAAGGAGGAGAGAACATGCACTAGGAGAGTGTGCTTCTTTGCTCACAAGCTGGAGGAGCTT CGCCCCTTGTATGTTTCAACTGGTTCTGCTATTCCTTCTCCCAGGTCATATTCTGCAAATAATTCTGCATTAGAAATGGG TTCAGTTAGCCCAATTGCATTTGGTTCTCCATCTTCCATGATGCCACCTGTGTCAACACCACCTTTATCTCCATCTGGAG CATCTTCTCCAGTTGCTGGAGGAGCCATGTGGCAGAATGTTTCAGTCCCTGCCCTGCAGCTTCCCAAAAGCAGGTTGAAC ACTGCATTTGCTGCTAGGGATATTGATTTCGATAATGAATTCCTTAGACTTGAAATTAATCGACGCAGGCAGCAGCTAAT GATGGATGAGGTATCCGGGCTCTCCTCTCCTTCCAACTGGAAAAATTCCATGCCTAGCGGTCAATCTTTTTCTGTTTCTT TGAATGATCATACCGGGGAACTGAATAGGCTTTCAGGGGTCAACCCTGCTAACTTTGAAGACATGTACGGGTCTCTGGAT CGATCGGTTTTGGCTCAACTCCATGGACTCTCACTTGATGTTGCAGGGTCTCAGTTACAATCTCCAAGTGGAATGCATCA GATGCGTCCGAATGTGAACCAGCAGCCGCGAAGCTATTCTTCCAGCCTTTCAACTTCAAGTGTGATTGGATCACCACCCT TCAACCCATCTGGGGAAGCAGCTGCTGCAATGGCCTTCAATCCAAGATCTGCTGCCTTTTCCAAGCGGAGCCAGAGCTTT ATCGAGCGCAGCGCAGTGAACCGCCACTCTGAGCTTTCTTCTGCTGCTCCTCCCTTTTCCGTTTGGGGCTCCCCTGATCG AAAACAAGATTGGGGAATGCATGGAGAAGAGTTGAACAAGCTGAGGAAGTCTTCTTCTTTCGGATTTCGAAGCAGCAGCA CTCCTTTAGCCATGGCTGCTACAACCGCAGCGCCGGCAGATGTTAATGAACCAGATGTGTCTTGGGTCCAGTCACTTGTG AAGGATGGTGCGCCGTCGGAATCTGGTCGGTTCAGTTTTGAATCTTCTGAGGATCTGCAAAAGCAACTGCAGTTCTACAT TAACAGTGGAGCAGATGTGATTCCAGCTTGGTTGGAGCAATTGTACATGGAGCAGGAGCAAATGGTGGCATGA
Protein sequence (LotjaGi1g1v0119800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENEYGKQEELHHKISALLEFSAADDLIGFKDAVEKEDHDVDEAGLWYGRRVGSNKLGYEERTPLMVAAMFGSLGVSIYI LGTGRVDVNRASRSDGATALHCAVAGGSAASPEVVKLLLDASADVHAVDANGNRPLDLIASVNKSIFNPRKRLLQALLEG TGDADQAWLMFPEALDQIEEQQRQDVSPPRVSRDGAEKKDYPADLSLPDIKNGIYGTDEFRMYVFKVKPCSRAYSHDWTE CPFVHPGENARRRDPRKYPYSCVPCPEFRKGSCSRGDACEYAHGIFECWLHPAQYRTRLCKEERTCTRRVCFFAHKLEEL RPLYVSTGSAIPSPRSYSANNSALEMGSVSPIAFGSPSSMMPPVSTPPLSPSGASSPVAGGAMWQNVSVPALQLPKSRLN TAFAARDIDFDNEFLRLEINRRRQQLMMDEVSGLSSPSNWKNSMPSGQSFSVSLNDHTGELNRLSGVNPANFEDMYGSLD RSVLAQLHGLSLDVAGSQLQSPSGMHQMRPNVNQQPRSYSSSLSTSSVIGSPPFNPSGEAAAAMAFNPRSAAFSKRSQSF IERSAVNRHSELSSAAPPFSVWGSPDRKQDWGMHGEELNKLRKSSSFGFRSSSTPLAMAATTAAPADVNEPDVSWVQSLV KDGAPSESGRFSFESSEDLQKQLQFYINSGADVIPAWLEQLYMEQEQMVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 690 | 690 | 2.6E-262 | – | |
| PANTHER | 1 | 690 | 690 | 2.6E-262 | – | |
| Phobius | 1 | 64 | 64 | - | – | |
| Gene3D | 25 | 156 | 132 | 6.9E-19 | ||
| SUPERFAMILY | 50 | 142 | 93 | 2.78E-15 | ||
| Pfam | 56 | 128 | 73 | 7.2E-7 | ||
| ProSiteProfiles | 60 | 165 | 106 | 18.802 | ||
| SMART | 60 | 90 | 31 | 1.3 | ||
| Phobius | 65 | 82 | 18 | - | – | |
| Phobius | 83 | 690 | 608 | - | – | |
| SMART | 95 | 127 | 33 | 2.7E-4 | ||
| ProSiteProfiles | 95 | 130 | 36 | 12.422 | ||
| MobiDBLite | 180 | 202 | 23 | - | – | |
| MobiDBLite | 186 | 202 | 17 | - | – | |
| Gene3D | 256 | 324 | 69 | 4.9E-6 | – | |
| SMART | 259 | 285 | 27 | 3.1E-5 | ||
| ProSiteProfiles | 259 | 286 | 28 | 13.901 | ||
| Pfam | 264 | 284 | 21 | 9.6E-6 | ||
| SMART | 294 | 317 | 24 | 31.0 | ||
| MobiDBLite | 499 | 529 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi1g1v0119800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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