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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0125800 |
| Transcript ID | LotjaGi1g1v0125800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing protein; TAIR: AT4G12710.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 3; TrEMBL-Plants: tr|I1MB75|I1MB75_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0125800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:19828197..19833399) extracted from Lotus japonicus Gifu genome v1.2.
GGAACATTTTATTTGTTTCCATATTTAACCATATATATGATTTATTCATTTTTTGAGAAGGGATAGATATTAGCAGCCGA AGGAATCAACAAAAGGGTTGGCCCCAAACTGTGTCAGGGTGCGAGTCTCAGAGAGAGAGAGAGAGATGGCAGAGGGAGAG AGCACAGTGGAACCAGAACCTGAAGCAACCGAGACATCATCAACAACATCAACAACAACGACAACATCATCATCAACAAC AACATGGAACCTCGGACAACATACCCAGATATTGAACTTGTCGGAGAATCTCATCAATGGGGAACTTAACACCAAGATTG AAGCTGCAAGAGAAATCAGAAGACTCATTCGCAAATCTTCTTCTCCCAAGACCCGCTTCAAGCTTGCTGCAGCTGGTGTC ATTCAACCCCTTGTCTTCATGCTCTCTTCTTCCAACCTTGATGCCCGTGAATCCTCTCTCCTCGCTCTCCTCAATCTCGC TGTTCGCAATGAAAGGTACTTCTAGTTCTATGCCACTACTGCCACTAAAGATGTGTTCTTTTTCTGAAATCTGAAATGGG TTTTGTGATTTGGTTCATGGGTATTTGCCTAAATCTTTGTGATTGTTGTTTAGTATCAACTATAGTGTGTGATTTTATCT GGGTTCCATTTTGAATTACTGTATGGTATGGAATCTGGATGAATATTATTATACAAATTACAATTCAATAAATCACAGCA TTTACATCTAACAACCTAGTGGGAAATGGATAGGTTTAATAAAATTTAAGATGGTAGCTTAATGGCTCTAACATACTGAT TTCATTCATCACAAATAAAATGTGCAGAAGATGCCGATTTATTGATAAACATGTGTCTTTAATGGCATAGATTTGGGTGA CGTGCATGTTTGTGGTTGATTTTGAGAACTGATAAACATTTTTGTGTGAACAGTGTTAGAAAAAAATCACTTTCGAGAGA GGAGTTATTCATCAACTAAATGTTGGTGTGTTTTGAATTTGATTAGCTCATTTCTGTGTTCAAATTATTGCAAAAATACT GGATTTAGTTATCGATTAGATGTTGATCTCCTTATAAATGAGATATATCGGTCTTGATAGTTTTTTATGGTTCTTAATTC AATGGATCCAAATGGTCTTCCTTTGCAAAAACACCATTCAACCGGCTACCCTTGATTACCTTAAATTAATCTTTTTGTCT ATTTGTAAGTCTTAATGATAGTAGATATATTTCCTGTTTATTCCTGAGTTTTTCTCACAATAGACAATGACGTTTGTGAC TGCATTTCCGTGATTTATTACTAGTTAGTAGCCTGATTAGACAGCCAACAATAAATACAATTCCATAGTTATCAATAGCA TGCTATAGCACTGCTATCGTAGAGTGGCCTCTGGCAGCCAGGGTAGTTAAAATCACGAGCTGGGTCGTGAGATCGTGCGA TTCCACAATCTTTGACAGCCTCATTGTGCTTGAGTCTACCTCCCAGCTCGCTTTCGTGGGCATGGGTGAAATCTCTGTGC AGGATCATAAAAGCTGTGAAATCTTACGATCCTGCGAGCTGAGTTTTGACCCATTTTTCATCTGTGACCCGTTTTGGATA CGTTACTGACCCCTCTCGGGCCTTCCTTGCTGCGCATCTTTCGCTTTCTCCTTCTCAGACGAGAGCCTCCCTTCTCTCCG TCGAATCTCCCTCCTGCGCCGTCGTCGTCGTCGAGATCCCCTTCTCCTTCTGTCCTGGTTTGTGACCTCATCTCTGGTTC TAGCTTGGCACTCTTGGCTCTGTACTAGAGCTTTGTTTGTTTTCCTCTTAGTCTGTTCTGGTTCAAGTTCGAGACCCCTT TCTCCCCATTTGTTTGCTTTTTTCTCCCTCTGGTTCAAGATCGTTTGTTAAGAAAATAAATGACTAGATGGAACGGAAGA TGGGATTTGCAGTGGAGCGGGCTAGGCTTGCCCCAAAAAATATTCTGATGGGCCTTGAGTGCTTTTACACATCTTTTTAT CATTCACAGACATCAATCTCATTTTTTATATTTGTAGTGGAGTGGGCTTAAGCTTGGCCCCAAAAAATACTGATGGCCTT GAGTGCTTTTTGACACATCTTTTTTATCATTCACACACATCAATCTCGTATTATATACATATATATGTATATATATTATA GGATCTTCCGAGCCGTGTTACGATCTCACAGTTTATGATCTTTGAACCCCCCCTTCCGATCCTGAGTAAAATCTTGAGTT TACCTACTTTGCTGGCAGCTATTCATTTACTGTCATCGAGCGTTTTGAAGTAGCAGGATTGGTAGCGACTATCTTCACAG GAGTGACAGGACAAAAATCCCCATTTACCACCTTGTTCTGTGCATTTTGAAGCCATTTTTATTTTTATATCAGAAAACCT ATGTATTTCTGATTCAAGACTAAACATACCTTGCTGTCATGCTCGAACTTGAGAGTTGAGATAAAAAAACATGACAGAGT CTGACTTCCTCCCTTTCTGGCCGCTGGTCCAGCATACTGGCTGTGTTTCCTGCCTACTCACAGCATTCTGGCATTGTTTC TGACTGAGCTTCGTTTCAAGGATCACAGCACAACCCTCCTTTGATCTCTGTTCTGTTCACATCCTCATGTTATCAGAGAG GTCTCTGTTCTCTCTTTTTTCGCTCCAGAATCTGTGTGGTGTTTTCTTTGTTCTTTGATTGATTTTGTGTTCAGAGAGGT AAGGTAGCCTCACATGTTGTTTGTTTTATATTTTGAAAGGTTTGAATGTGTTCATTTACTTTTCTAAGAGGTCTTTGCTT TTTTTGTTAACTTTTAGTTTCAGAAATACAGTTTTAATTGTTGTAACACATCTTCCTCGGCAGAAATTATGCCCTTGCTG AACCAGCAGTTACGATGCTACTAAACCGGGCAGTAGAGAAATTGTTGTGCATCATAGATTGCCTACTACAAATTGTTAAA CATTGAGATATTGTTGTGCAGTTATGTTTTTGTGTGTGTGTGTATGTGGGTGTGTGTATATATATATATCTCTTTTTCCA CTGTTCTTTGATGTGGGATCTTAACCAACTTTCCCTTTTGAGACTAGTGAGTTTATAGATTATGTGGCATTACCCATGTT ACCCCTTATTTAGTGGCTTCCACATTCAATAGCGTTCTGTAGGTTGAAACAGAAATTAGTCAGAAAGTTCCATGAAGCCT TACTAAACATAATATCCTTCTAGATTTGGAATGCTGGAATCCTATTTGCACATGATTGAAATATGCATAGGAAACTACCC AGTAATCTGATTTTTTGTTTTTCTCTAAACTACTGGTGAAAGAAATATTTGATATTCAGTTCAAGATGTCCGCATGTTGA TCATTTTTTAAATTTGGTTAAATGGAATTTTAACTCCTAACCTTAGTTAGCAACCATCAACTACTGAATGTTTGAGTGGT TTATTGATTTTGATTTTGAGTCTCATTCTTGTAAAGGACTACTTTCTCCATTGGCTTGTCAAATAATTTTTTCATGTATT TATACTCTTTCTTGATATGAAATAAATATTGATTTTATAGAAATATTGTACTGGTGATTGAGAGAACCAGTTATAAGTTT TAGTTATAGATCGAATCTAACTATAATATGACTATGAGATTTTCTAAATATCTCTGACTACCAAGTTGCCTGATTTGGGG ATGATTCAACCAGCCTTTTTGAGATGTGGCATATCTCAAGGTCCTTTTTCTTTTTCTGTTTCTTCTGTAGAGAATGCATG CTTAGTGGATATTTTGTGCCTAACTTGGGTGAAACGCTCTGCAGTCTGCACTATGTAATGTTTAACTTATTGTTTCACAA CTATTTGTTGTTATTAGTTTGTGATTTTATACTTTGGCTCTTTCTTGTCATTCTTTCCTTTTCTTATATGAATTATGTTA CTCACTTATTCTACATTTTTGAAGTTTATTCATTCAGTTCACCATATGACATTTTGGAGTTCAAATTTGTTAGGAACAAG GTCACAATAGTGAGTGCTGGTGCCATGCCTCCTCTGGTGGAGCTCCTCAAGATGCAAAATAGTCGAAGCATGCGGGAGTT AGCTACAGCAGCTATCCTCACACTCTCTGCCGCTGCACCCAACAAGCCCATTATTGCTGCTTCTGGAGCTGCACCTCTCC TTGTTCAGATTCTCAAATCTGGAAGTCTTCAAGGAAAAGTTGATGCTGTCACCGTCCTCCATAATCTTTCCACCGACACT GAGGATTCAACTGAACTTCTCGACGCTAGTGCTGTTTCCCCTCTCATCAACCTCCTTAAAAATTGCAAGAAGTATTCCAA GTTTGCAGAAAAAGCTACAGCACTACTTGAAATCCTTTCCAACTCTGAAGAGGGACGAACCGCAATCTCACTTGTAGATG GTGGAATTTTAACCCTAGTGGAGACAGTTGAAGATGGATCACTTGTCAGCACAGAGCATGCTGTTGGAGCGTTGTTATCA TTATGTCGAAGCTCCCGGGATAAATACCGGGAACTTATTCTTAACGAAGGAGCGATTCCGGGTCTGTTACGGCTGACTGT GGATGGCACGGCCGAAGCTCAAAATAGAGCCCGCGTGCTTCTAGATTTGCTTAGAGATTCTCCTCCTGAGAAAACACTAA CCTCCTCAATTTTGGAGAAAATTGTTTTTGACATTGCCGAAAGGGTAGATGGAGTAGATAAAGCTCCTGAAACTGCGAAA CGATTATTGCAAGATATGGTTCAAAGGAGTATGGAGCACAGCATGAATTGCATCCAGCAGAGAGCTGCATCCTGTAATCC TGTGATTCCATCAACTTGATATATATATCTCTGCTCGACAAGCAAACATGCATAGTAGAGTTTTTAACTTGTATATATAT TTTCTTTTTCCCCTCTGGGCCAGTTTGTGTTTTATGCTTTTAGTTAAATCACCATCCAGAATGAGTCTTAGCTGCTCTAC ATAACTAGTCTAATGATATTTTTCAGACTAATCTAGGCTTTGATCTGTTAACCTTGTGACTCAGAATTACACTGTATACC TTGTCCGGGATAGTGCATATATAAAGGAATCTGCTTTTGCATCTACTTTTGGTGAATTATGAATGAACATGTGAAAGATT TTGTCTGTGAGTTATACAGTCTGAGTCAATCGATGTATTCTGTATCCTTTATTTGTGAGTTTTAATAGCAAAATACATTT CTC
CDS sequence (LotjaGi1g1v0125800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGAGGGAGAGAGCACAGTGGAACCAGAACCTGAAGCAACCGAGACATCATCAACAACATCAACAACAACGACAAC ATCATCATCAACAACAACATGGAACCTCGGACAACATACCCAGATATTGAACTTGTCGGAGAATCTCATCAATGGGGAAC TTAACACCAAGATTGAAGCTGCAAGAGAAATCAGAAGACTCATTCGCAAATCTTCTTCTCCCAAGACCCGCTTCAAGCTT GCTGCAGCTGGTGTCATTCAACCCCTTGTCTTCATGCTCTCTTCTTCCAACCTTGATGCCCGTGAATCCTCTCTCCTCGC TCTCCTCAATCTCGCTGTTCGCAATGAAAGGAACAAGGTCACAATAGTGAGTGCTGGTGCCATGCCTCCTCTGGTGGAGC TCCTCAAGATGCAAAATAGTCGAAGCATGCGGGAGTTAGCTACAGCAGCTATCCTCACACTCTCTGCCGCTGCACCCAAC AAGCCCATTATTGCTGCTTCTGGAGCTGCACCTCTCCTTGTTCAGATTCTCAAATCTGGAAGTCTTCAAGGAAAAGTTGA TGCTGTCACCGTCCTCCATAATCTTTCCACCGACACTGAGGATTCAACTGAACTTCTCGACGCTAGTGCTGTTTCCCCTC TCATCAACCTCCTTAAAAATTGCAAGAAGTATTCCAAGTTTGCAGAAAAAGCTACAGCACTACTTGAAATCCTTTCCAAC TCTGAAGAGGGACGAACCGCAATCTCACTTGTAGATGGTGGAATTTTAACCCTAGTGGAGACAGTTGAAGATGGATCACT TGTCAGCACAGAGCATGCTGTTGGAGCGTTGTTATCATTATGTCGAAGCTCCCGGGATAAATACCGGGAACTTATTCTTA ACGAAGGAGCGATTCCGGGTCTGTTACGGCTGACTGTGGATGGCACGGCCGAAGCTCAAAATAGAGCCCGCGTGCTTCTA GATTTGCTTAGAGATTCTCCTCCTGAGAAAACACTAACCTCCTCAATTTTGGAGAAAATTGTTTTTGACATTGCCGAAAG GGTAGATGGAGTAGATAAAGCTCCTGAAACTGCGAAACGATTATTGCAAGATATGGTTCAAAGGAGTATGGAGCACAGCA TGAATTGCATCCAGCAGAGAGCTGCATCCTGTAATCCTGTGATTCCATCAACTTGA
Protein sequence (LotjaGi1g1v0125800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEGESTVEPEPEATETSSTTSTTTTTSSSTTTWNLGQHTQILNLSENLINGELNTKIEAAREIRRLIRKSSSPKTRFKL AAAGVIQPLVFMLSSSNLDARESSLLALLNLAVRNERNKVTIVSAGAMPPLVELLKMQNSRSMRELATAAILTLSAAAPN KPIIAASGAAPLLVQILKSGSLQGKVDAVTVLHNLSTDTEDSTELLDASAVSPLINLLKNCKKYSKFAEKATALLEILSN SEEGRTAISLVDGGILTLVETVEDGSLVSTEHAVGALLSLCRSSRDKYRELILNEGAIPGLLRLTVDGTAEAQNRARVLL DLLRDSPPEKTLTSSILEKIVFDIAERVDGVDKAPETAKRLLQDMVQRSMEHSMNCIQQRAASCNPVIPST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 33 | 33 | - | – | |
| MobiDBLite | 11 | 33 | 23 | - | – | |
| PANTHER | 20 | 382 | 363 | 8.9E-170 | – | |
| PANTHER | 20 | 382 | 363 | 8.9E-170 | – | |
| Gene3D | 41 | 229 | 189 | 6.2E-33 | ||
| SUPERFAMILY | 45 | 329 | 285 | 9.6E-37 | ||
| SMART | 73 | 113 | 41 | 17.0 | ||
| ProSiteProfiles | 84 | 126 | 43 | 10.447 | ||
| SMART | 114 | 156 | 43 | 0.017 | ||
| Pfam | 115 | 155 | 41 | 1.5E-5 | ||
| ProSiteProfiles | 126 | 169 | 44 | 10.552 | ||
| SMART | 157 | 197 | 41 | 0.89 | ||
| ProSiteProfiles | 168 | 210 | 43 | 9.677 | ||
| SMART | 198 | 240 | 43 | 25.0 | ||
| ProSiteProfiles | 209 | 253 | 45 | 10.482 | ||
| Gene3D | 230 | 363 | 134 | 5.0E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0125800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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