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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0129500 |
| Transcript ID | LotjaGi1g1v0129500.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal protein; TAIR: AT1G26910.1 Ribosomal protein L16p/L10e family protein; Swiss-Prot: sp|Q9SPB3|RL10_VITRI 60S ribosomal protein L10; TrEMBL-Plants: tr|I3SEG3|I3SEG3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0129500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:20774417..20780508) extracted from Lotus japonicus Gifu genome v1.2.
AGTCTCAGCGAAACTAAAATTACCCGTTATGTTATTTTTCTTCATAAAAATCTTGTCCAATTCAAGCACCCTAGGAAGAA ATCTTCAAACAAGAGATGTGGGGATTGGGCCCAAAACAAAAGCCCGTCTCTTTAGCCCTAAACTGCTGCTGCGGCCTCTA TATAATGTTCTGCATTGCTAGGGTTTCGTTCTTCTTCCATCCACAGATTCAATCCCCAACGCGCAGCTGAGAGAGACCGC GCCGCTGCCATGGGAAGGAGTAAGCACTCAACCCCTATCTCTTTTCCACCGTCATTTCTGCTATACATGACTTCGTGATT CTCTTGATCGGTTTTCAATTGAACCCATTTTAGCTTGTTTATGCTAAGATTAGGTTTTATTATTCGCTTGTTGAGAATTG GTTATGCTGAAACTTGATGTATTTTACATGTTGGTTTGTTGTTGCTGCAAAATGGATGTAATAGCTGATTGAATTAGCTT TGAGATTGGTGTTACCTTGGATTTGATTCTCAAAGGGTTTTGTTGGAATATGTGTTTATTATATCTTGTTTTAAAGAAGT TGATATGATTTTGTATTGAATACTTGTTGGATTCTTAGACCTTGTATGAACTGGGATTATACCCATTTTTTATTTGATCA AGCTTAGAAATTACTTCAGATTTAAACTATTTGATGTTTTGAATAATCTTTTACTAGAGCTGTATTCTTTGTTTTTTTTG CTGTAGTCATTATTTCTTTGTTAGCTCAGCCTGAGATTTATTCAGATTGGTGGACAAGGATCTTTTATTATTATTGGGAT GTCTGGATTGTAAGGTTGCTTAATAGATGGTTTCATGAACTCAATGGGTCTTCAGAGCTTTACATATTCTTTGAAATCTC TTGTGATTCTCTGATGCAGTGGCTTTTTTTGTTTGTCAATCACTTGTGCTTATCTTTAAGTTTTATGTTGTGAACTTTTT GGTATATTACTATCAATATTTCATGTTTAGTTTTTTGTTTCCTGTAATTCTGGAAAATTGTTTTAGATTGATTTCATTTG TTTCTTTGTCTTTCAATTGTGCTGATGGTAATTGTAACTTTTGTGTGATTCAGGACCCGCAAGGTGCTATCGCCAAATTA AAAACAAGCCGTACCCTAAGTCACGTTTCTGTCGTGGTGTTCCTGATCCCAAGATCAGGATCTATGATGTTGGTATGAAG AAGAAGGGTGTTGATGAATTTCCTTTCTGTGTCCATCTGGTTAGTTGGGAGAAGGAAAATGTCTCAAGTGAGGCACTTGA GGCTGCTAGGATTGCTTGCAACAAGTACATGGCTAAGTTTGCTGGCAAGGACGCTTTCCACTTGAGGGTTAGGGTCCACC CATTCCATGTCCTTCGGATCAACAAGATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACTGGCATGAGAGGTGCTTTT GGAAAGCCACAGGGTACCTGTGCTAGGGTTGCTATTGGGCAGGTTCTTCTTTCAGTCCGCTGCAAGGACAGTAACAGCCA TCATGCCCAGGAGGCCCTACGCCGTGCTAAGTTCAAGTTCCCTGGTCGTCAAAAGATCATTGTCAGCAGGAAGTGGTATG TATTTGTTCTAAATTGGAAGCCACCTAGGCACCTGAACATGGCTGGTTACTTTTCCTCATCACCCCGATTTGAAGGATGA ATAATACCTTACATCCATTGTAGATTTGCTTCATGTAATTGTATGTAATGACTTAACACTAATTATTAATTATTGTTTTA TATACTTTCAGGGGATTTACCAAGTTTTCTCGTGCTGATTATCTGAGGTACAAATCAGAGAACAGGATTTTGCCTGATGG TGTGAATGCAAAGGTAATGTGAATGCAATATTCTGTAATTGTAACTTATTTGCATATAGTTGAGGACATTATTCTAAACT TGGATCATGGTAATATCTGGAGCTTTTTCTGATCTGAGAATGAAGTACTCCATGTGTATTCATTTAGTTCTTCACTTATC TACTCATTGATAAGATTGGACTCTTATATTATTTTCTTGCTGTTTTGCAGCTTCTTGGATGCCATGGACCATTGGCTAAC CGCCAACCTGGAAGAGCCTTTATTGATGCTGCCAGTGCAACTGCCTAGACCTGCCTGTTTTGAAGTATCATAGTTTCGTA AGAATGAATTTGGATGTTGTTTTGTCCGAACATATTAAACTTAATGGAGTCTACTTTTTGGTTTTGCGAACCACCCTGGA TATCTAGTGTTATATTTTGTTAAGGACCTAATTTCCGTTTCTCCTCTTTAGCATTTGATATTCTATTGCTGTTCAGCTAA TATTCGGTCACAGTTTTCTACTGCTTTTGCTATCTTGCATTCTTGCTAGATAAAGTGGTATGCATTTACAGATCATTGAT TAGGTTTTGTCTGCTCACTATATGGTGAACTCGTTTGAATGTAGTTTACTCGATGTCTCTGCTATTGCCTCAACAGTAAT CAATAAAAGTAGAATTTTAATTAGTCACTTTGCCAATTAGAACCACAACAGCATCGGATATAGTTTGAACATAACTTTAA TCTCATGCAAATTCAGAAGATATTTAGACAAACATGTGAAAAAAAAAGTTGCTTTTGGCTACCATAATTTTAGTTTCACT GTGATTTTCTTTTTTACCATATATCTCGACTGTACTCATGTACACAATCTCCTTTTTAAGTATGGTTGTTTGTTGATTGG TTTGGTTGAGTTTGGGAACTTCGGATACACAATCTTTTTTAAGTACTGATTTGGTTGAGTTTGGGAACTTTGGAAACTTT TTTGTCCGGTTACGAAATTGAAGTCAAATAACATCTTAGCCAACTCAAAGAACTTGCACATAAGCATGTGTCATAAGGGA AGCTTGAATGACTTATGAATGAATATCCTGTCTTGGCTTGTCTAGTGTTTGAGCGGGCGCATGACCAATGAGAGTCAACC TTGCCCTCGGAAGCCCTTCTATAAAGGCTTCCTTTGGACTTGAGCGTCTGAGTATCTTTTGCTAGTACCCTTGCCATGGT CCAATAGCTTCATCGTGCACCTAAGACCGTTGTGCTCCACTCTAGAGACCAAGGAGAACCTCCAAGTCTTAGGTTGTGCT CCACTGCAGAGATCGAGTCTAGATCTGATTCTTTGATAGCTGTAGGTATGGGCATAAGGGTTCTGGTGAATCTTGAAACC GTTGTGAGATAGCTTTGTAGTACTTCATGGCCTTGTCCTTGTTCCAAAGGATTAAGGATAAAAAGGCATGGTGATAACAG ATGAATGGCATTTGATGCCAGACCGTGATGATTTTTCTGGTAACCATCAAACTCCATGAAATGTTTTCCCCCCCTTAATA TCAATATTTTCCACCAACCATCGACTATATAAGTTCTGGAGGAATAAATTTCTATTTACAATGAAAATGGACAATAGTGT TGTTTAGCCATCTAAAAGGGTCTGAGAAAGATGGTTTCAACTCCAGTAAACAAACGGTAGTTTTGAGCTTGTTTACATTA AACAAATGCAATAAGATACCAGATTTCTTACACCACCAACGGAATACTCTAGTGTGGAAAGAGCACCAAGTGGCACTCAT GGCTTAAAAGCCAAACCATAAACTTCAAAATCAAATTGAATGTTATATTACAGTTTCTAATTCACTTTAAACAAACAACT GAATCAGATCCATTAACTGAGTCTTTGCCCGGCCAAATCAAAAGACATTCTATTTTGGTTGAAACATTGATGATATAAGT GAATACTATCATCACCCCAATGACCAGAATCTAATTAACGAGGGTATAGCTCTGTAATTGAAACCTCATTTATTGATTCT TGAGGTAATCTATTGATGGATTCACTTGATCTTGTTTCCCCTGAATTCTCTTCGAGGCTTCTAGTTCTACCCATGAAAAA TCCAGGTTCTGAAGGCACAGGAAGATTGAGAGAATAGCTGCTAAGCATGAGTGCAATGGTAGCCATAGGTGGTCTGTTAG CGATGTTTTCTTGAACACAAAGTAAACCAATGTGAATACATCTTATCATTTGATTTCGTGAACCGTTGTTTAATGTCGGA TCTATAATATTTGCAGGTGTCCCCTCCCTCCAGTTTCTCCATGCCTGCAAGAATTTGCTTAGTTATAGATAACCATAAGA CGAGGCTACCAGTTCCATTTCATCAGCAAGAAAGAAACAACAGTCACAATAGAAGCTGGGTATGGGACAAACTATGTCTA TATGTCTACTGAAATTAGAAAATTTTGTCAACAGTATACCCAAACATATAATATATAAATGATTAAATAAGTTTTAATTT CACAAAATAAGTAGAGACAAACAAACTCAGTTTCTCTTGTATACAATTTCTCATGTAAAGGAAGACTTACAAAACTCAGC AGATCTTCCACATTCTCCCCATGACGAACGCCACTGTTTTTTTGGCCACTAATAATCTCAAGAACTAGTACACCAAAACT GAAGACATCTGATTTTACTGAAAATTGTCCATACATTAGATACTCAGGTGCCATATATCCACTGCATGCCAACATGAACA AACTTAATTAGTAAAAATGCTTTGACTCTTTTAAAGGTTACATTTTGTCAATATCTGATTTTGTGTTGGTGAAGAAGTAA TTGTTGCTATTCGATCTTTTTGAATGAGCTTGACACTTATAACAACTAGTTACAGAGTTTGGATGCAGTCCATCCAATTC TCTTAGTTAACAAAATTATTTATCATGACTGAATGATAATGTAAGAGCAAATATTAGTTGTTAGTTGATTCAAATTTAGC TTTTATGACAATGGTAGGCACATATTCTAGTACTTACTAGGTTCCAACAATTCTATTTGTATTTTCTTGTGTTTGGTCCA CAACAATCAGTCTTGCCATGCCAAAATCTGCTATCTTAGCATTCAGCTCGTCGTCTAGGAGAATATTGCTTGCTTTGAGA TCGCGATGTATAATGCGCAATCGCGAATCCTCATGAAGGTAAAGAAGGCCTCGAGCAATACCATGTATGATTTTGTGGCG CATTTCCCAATCCAATTGCGCTTTCCTGGTTGGATCTGTATTAATTTTAAAGCTATGTTAGTAGCCAGTTAGTCATTGTT CGGTTACAAGCTGGAATCACTTATTGGAGCTTCTCTACTTGAAGTAACAAAACAACAGGATAATAATGCAATGTTTTTAG CTTACCAAATATGATGTAGTCAAGACTTTTATTTGGAACAAATTCATAGATAAGGAGCCTTTCTCTCCCTTTCAAACTGA AACCAAGTAGCCTAACTAAATTTCTATGTTGAAGCTTGGCCACTAGAAGCACTTCATTCTTAAATTCCATATCTCCTTGG CCAGAATTCATTGACAATCTTTTGACAGCAATATCTTGTCCATTGGTTAGCTTACCCTGAAAATATATACCAATATATTA TGCTCAACAAGTTCTTCCTCAGCCATGCATGTTATGCAATGTTTTGATGAAACAATGTTATCTTACCGAGTAAACAGCAC CAAATCCACCTTCTCCAATCTTATTAGAATCAGAAAAATCATTTGTAGCAACTCGTATGGTGTCAAAGTTGAAGTGCAGT GACTCATTGGTTTCAATTTCATCATCATAATCATCACCTTTTGAAGGTAATGGGAAATTGAGTTAGACAAAGGAAATGTC CTTTTCAGATATGATAAGTACAATCAATATTGAACATGGACTTACTTTCAAAATTTTCACTTGGCTTCTTCACTCGTGAA TAGATGCAGATAGAAATGAGCACCAATGCAACCAATACAACTGGAACTGCTATGGCTATGGCAATTTTAGATGTGTTACT CTTCCCTGTACAAATCAGAAATCCTTGGTGGGATTGTCCATAATATAAAAGCCTATTTGTATACAAACTAAAAATGGAAG ATTGATGCATCAACATATACTCTTATGAAAATGAATATTGTGTAATTAACCACATAAACCCACAAACATACACAATTTAA TTAAGTGCTAATGTCAATAACTAAAAGGAATGTAAATTCCCTTCACATGGTCCGAAACAAGAGTACCAGAAGAATCAAAG TACTGATACAAG
CDS sequence (LotjaGi1g1v0129500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGGAGACCCGCAAGGTGCTATCGCCAAATTAAAAACAAGCCGTACCCTAAGTCACGTTTCTGTCGTGGTGTTCC TGATCCCAAGATCAGGATCTATGATGTTGGTATGAAGAAGAAGGGTGTTGATGAATTTCCTTTCTGTGTCCATCTGGTTA GTTGGGAGAAGGAAAATGTCTCAAGTGAGGCACTTGAGGCTGCTAGGATTGCTTGCAACAAGTACATGGCTAAGTTTGCT GGCAAGGACGCTTTCCACTTGAGGGTTAGGGTCCACCCATTCCATGTCCTTCGGATCAACAAGATGCTTTCATGTGCTGG AGCTGATAGGCTTCAGACTGGCATGAGAGGTGCTTTTGGAAAGCCACAGGGTACCTGTGCTAGGGTTGCTATTGGGCAGG TTCTTCTTTCAGTCCGCTGCAAGGACAGTAACAGCCATCATGCCCAGGAGGCCCTACGCCGTGCTAAGTTCAAGTTCCCT GGTCGTCAAAAGATCATTGTCAGCAGGAAGTGGGGATTTACCAAGTTTTCTCGTGCTGATTATCTGAGGTACAAATCAGA GAACAGGATTTTGCCTGATGGTGTGAATGCAAAGCTTCTTGGATGCCATGGACCATTGGCTAACCGCCAACCTGGAAGAG CCTTTATTGATGCTGCCAGTGCAACTGCCTAG
Protein sequence (LotjaGi1g1v0129500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFA GKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFP GRQKIIVSRKWGFTKFSRADYLRYKSENRILPDGVNAKLLGCHGPLANRQPGRAFIDAASATA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 217 | 217 | 1.2E-149 | – | |
| TIGRFAM | 1 | 174 | 174 | 5.6E-77 | ||
| PIRSF | 1 | 182 | 182 | 3.5E-95 | ||
| PANTHER | 1 | 217 | 217 | 1.2E-149 | ||
| Gene3D | 1 | 174 | 174 | 3.4E-96 | ||
| SUPERFAMILY | 4 | 173 | 170 | 1.57E-75 | ||
| Pfam | 12 | 166 | 155 | 1.6E-41 | ||
| CDD | 41 | 166 | 126 | 1.37975E-44 | ||
| ProSitePatterns | 108 | 129 | 22 | - | ||
| Gene3D | 175 | 217 | 43 | 8.6E-20 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi1g1v0129500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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