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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0132100 |
| Transcript ID | LotjaGi1g1v0132100.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein 87A; TAIR: AT1G61670.1 Lung seven transmembrane receptor family protein; Swiss-Prot: sp|Q28EW0|TM87A_XENTR Transmembrane protein 87A; TrEMBL-Plants: tr|A0A1J7HRF5|A0A1J7HRF5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0132100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:21140835..21145669) extracted from Lotus japonicus Gifu genome v1.2.
TCGAAAACATGTGTAACTTTTTTTTTTTTTACTTTACTATGTCACGTATTAATGTTTGTGCTTATTCTCGTACGACGACA TGATCACAAAATCAGCTACACTCTCTCACTGCAAATTCTGATCTGTTTCGCTGTGTTTGCAGCACTTTCACAATGACGAT GGTTGATCATGGCGGCACAACGAGTCTCCATTGTTACCACCACTTCATCTCCTTCATCCTCTGTCTCACCTCAATCTCCA TCACCCATGTCGCAGCTTCCATCCACGACTACCAGAACGAAACCTTCATCCACCGCGCTAACTCCTTCTTCATCCATGGT GGCAGTGAGGGTCTCTACGCCTCCAAACTCCCCTCCTCCAATGTCTCTCTCGCTTCTGAAGACAAGTTCCTCAATGGCAA ATCATTCATCAGGTGATGATTCATGATTCCCTTTATTTCCTTTCTATTTCTGCACCCCATTTGCTCTTAGCTTTCTTTTT TTGTTCGCATTGTTCTATCAGCAAATGGGTATGTTGGATCTGTTTGTTTCTCGGGAAATTGATTGGGTTTCGTCTTTTTC TTGCCATCATTTTCCATGAAAAAAAAAATAATTTTTTAATTCACTGGGTGTCCCCCAATTGACTGATTTTGGAAATTTTG TAATTTGAGTGGATGCAGAAAATGACAGAAACATTTTGATTTGTTTATTATGATTATTATTTAAATAGAAAATTCTAATC TGGGTTCAGAAATGGGAAGGATTCATGGGAACAGAGTTTTCAGTCAGTGATGTATTCAATAATATGCTTGTGAATAAATA ATTAGTATTCTTAATTCTTGATAGGAACCTGTTTGAATTAACTAGTGAGATTGTAGCTGAACTGTCACCTTTCAGAGAGT ATTTAATTTATGAATAAGGTTTTAGTTCTTCAGAAAAGGTAGTTAAAAAGAGTTTTATAGCATGTTTAGATCAGCTTATT TCTCCTTAGAATTGATTTTGGTACCTAGAAGTTACTCAGAGAAGATCCCCTCATAATTGATTTTGGTTTTAGAATCAAGT GTAGAAGGATTTACAAACATGGAATTAATGTCATGAGCTGGATCAGGTTTGAGTCTATCACATTTCGAAGAACAAAAGAG TCTGCTGAAAAGACGAATCCGATGCAGCAAAAGACAGGGTTGGTGGAGGCTATAATAGTTAAGGTAAGAGATAGGAGTAA CATTGGGGGTGCTTATCTGAACTCTGATGCTATATGCTGCACCCCGGAGCTTGCCAAAGCAGGTTCTTGCAAGTTAGGAG AGGTTATCATCCGGGAAAATCCGGATGACCCGAGCGGGCCTAGACGTCTGCAGACATTTTTCGAAGGGCAAAATGAAGAG GCTACAATGGTTATTCAAACTGTTGACATAACCAGTACTGGAATGTATTACCTGTATTTCATGTTTTGTGATCCTCAACT GAAGGACACGGTGATCTCTGGAAGAACTGTTTGGAGAAATCCGGATGGTTATCTACCAGGGAAGATGATGCCGTTGATGA CATTTTATGGTTTAATGCCTTTGGCTTACCTTTTTCTTGGCATGGTGTGGTTTCTTCGGTTTGTGCAGTATTGGAAAGAT GTGATCCAGTTACATTACCACATTACTGCAGTTATTGGCCTTGGCATGTGTGAAATGGCTCTTTGGTATTTTGAATATGC AAATTTCAATTCCACTGGAAGCAGGCCAATGGGAATTACACTATGGGCTGTTACCTTCACTGCTGTCAAAAAGACAGTCT CGAGGCTTCTTCTTCTGGTAGTTTCAATGGGTTATGGCATTGTTCGTCCAACTCTTGGTGGCATAACCTCAAGAGTCCTT CTTCTAGGTGTGGTGTATTTTGTGGCCTCAGAAGCACTGGAGCTGGTGGAACATCTGGGTAATATTAATGATTTTTCTGG GAAAGCGAGGCTTTTCCTAGTGCTTCCTGTGGCTCTGTTGGATGCATGCTTTATTCTTTGGATCTTTTCATCATTATCTA AAACTCTGGAGAAGCTTCAGGTGAACCAGCATGGAATAATATCCCCTATCCTTGCATTATCAGCTTATGAGATAGGCCAA TGGGCTTAACTCCAGTCTATGAAATTCTAGAATAGACACAAGTTTGGCATATTTATGTTGTTGATTATATTTGTTATTGT TGACATTCCAACAAAAGTATTATGATGTTTTTAAAAGGGAAATGAAGGTACATTTAGAAAATAGCTTGAGTCTTTTTGGA AAGTTCTATGATCCTAGGATGAATTAAAAAAGGGTGACTGAAGAATTCTTGGAGCTTCAAATTAAGAATTTAAGATCATT GTATTCTTGTATATTCTTATCCATACTTAAACATTTTCACTCTTAAATCTGGTTTAACTTGCATTTCATTTGCTTTGCTA TTAAGTGTTAACTAAAAATGATTCTGTACATTTGTGGATTCTATGCACAGATCCGGAAAAGTACGGCAAAACTTGAATTG TACAGGAAATTTACGAATTCCCTTGCAGTGACAGTGCTTCTTTCAGTAATATGGATTGGCTATGAGGTATTCTTTTGTTT CTTTGCTACTTCCTTTTTTTTTTTCCTTATTTTCTCCATATCCTTTGATGATCATTAATGAAAATACTACTGAGCCGAAA ATACTAGTGAGATAATAGTTTTGAATAAAAAAATTAACAATGTAATTTATGTCATGACTTGAAAAACAATTTTCTCCTTA ATGACAAGTAGATATTGTTCCTAATCTTGATTTTTTTTATGTGAAGTCTACAAGAGACTCGGGCTCTGTTTTTATTTTTA TTTTTCATATTTCAGTTGTACTTCAATGCATCTGATCCTTTAAGTGAACTGTGGCGAAGAGCTTGGATCATCCCAGCTTT CTGGACTTTGCTTTCTTATGCTCTCCTGCTAGTGATCTGCCTTCTCTGGTCCCCATCTCATAATCCTACCAGGTATATTC TAGCTTTACTGAAGAACAGAAAACATAAGGTTAATTCTGATAATTGCATATTGATACCTGTAAATCTGCATTTCCTTTTC ATCTTTGCCTTTCTCTGTGGATGACACCTCACATATTTGACCCAAAAGTTGTCAAGTTGTTTTTCAATGCGTATGTGTCT CGCTGAGTTCTAATTGTTTCAAGTCTTTCATATAATTGCTAATGTTCGAGAGCACCCTATAAAAGTGGTAAGTTGTGATT TCAATAACTTGGTATCAATTTTAATGGGAGTAAATTTTGGGAAAGTACCGCAAGGAATGCTAATACTTAAGGACTTAAGG GTGTAATATGGAAATTTTAATTGTAAAGTATTATGATTTTGTTTTGAGACGGTGTTGTGGTTTTTATGGTGTGAGAAGTT TCAATTACTGCAGTAAGGGAATTTTTCCGAATAAATTGTATTCTTTAATTTGTTTGTTCTTGTCTGTAAATGAAATAGTT TATTATGTTGTGAGAATTTCAATTACTGCAGTGAGTGAATTTTTCAAATAAAGTTTACTCTTTAATTTGTTTGTTCTTCA TCTGAAAATGAAATTGTTTATATGCTTGACAAAAGACTCTTGATTTTTTTGTCGAGATCTTCAAGAAACATTATTGGGTA ATCACTGAAATCAATATAAGCTTGATTCTTAATGTCTTTTGAATGGAAAGGAATCAGATATGTATCACTTGATGAACATG CTAGCTTAAAGTTCAAACCAACACCAACCTTAATATTTCAAAGGGGACTCAAACTATTGTGGATACAATTCCAACCAACG TGCTCCATTGAGATTTGAGATAAAATGAAGAGTCTACATGTTTCAAGGATGATGTTAAAAATGTACCGACAGCAAACCAA ATTGAAAATAGGAGTACCGGACTATAGAAGCTTTTCCTTTTTATATTTATGGTGCATTTGGGCAAACATATTAATGTCCA TAAGCTAATTTGAGAAGGTTAATGAAATAATCTCAAATAAGTTAGATATAACTGCTGATCCATGAGCTAATCTGAGCAGC TTATGTAAATAAACACAAAACAACTTATAGGTAGGTCATTAGCTATTTACATAAGCTCTCCCAAACACTTGCATAAGCAC TAAGTTATAAAATAAGCTCAAATAGGCTCTTCCAAACGGGGTCTTAATTATGTATATTTACACTGACTCAGTGACATTTT ACTTGAGTTTGTGCAGATACGCATATGAGACTGGGGATGACTTTGATGAGGAGGTTGTCCGACTTGCTGGAAGTGGAATT AAAGTGTCTGGGGATATGTCAATCTTACTAGAAAGAAAGGCATCAGGTCCCACAGAACATCATGTGTTTGGACTTGGAGA AGAAAGAGAGGAGGACAAGAGGGAGTGATGGCCCCAGCTTCAGTATTCTTTCCTTCCATTCTTTGCTGTGCCTCTTTGTA TTTTTACTTGGGAGGGCTTAAAAAGAAGGGTCAATGTCAACATGAAGAAGCAACAAAAGACAGGGAAAGAATAGAGGGCA GGGTTTGTTGAGATCATTATTCAATGGTCATTCAACTTCTAAATTCAAGGTGATATTGTGAGCTTTCCAGGAAGAGTGTT TAGAGGACAGCAGCTATAACTGGTTAGCATAAGTGCTTGGTAAAGTGGACAGAATTCCTTACCTAGTAACTTATCTTTGT AGTTAGTTACATGAACATGGTTCAAGTAACTTTGATCCTTGTTCTGCACATGCTCTTTTGAGCATTGTTAAAGAAATAGA AGAGAAATTATTATCATGACATTGTTTATTAGCTAGTCTTTATGGATATATGGAAGCAATAAATGACATCTTATAAAACA GCAAAAGTCTTATCCCGCTAAATGAGATCTCGGAC
CDS sequence (LotjaGi1g1v0132100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCTGGATCAGGTTTGAGTCTATCACATTTCGAAGAACAAAAGAGTCTGCTGAAAAGACGAATCCGATGCAGCAAAA GACAGGGTTGGTGGAGGCTATAATAGTTAAGGTAAGAGATAGGAGTAACATTGGGGGTGCTTATCTGAACTCTGATGCTA TATGCTGCACCCCGGAGCTTGCCAAAGCAGGTTCTTGCAAGTTAGGAGAGGTTATCATCCGGGAAAATCCGGATGACCCG AGCGGGCCTAGACGTCTGCAGACATTTTTCGAAGGGCAAAATGAAGAGGCTACAATGGTTATTCAAACTGTTGACATAAC CAGTACTGGAATGTATTACCTGTATTTCATGTTTTGTGATCCTCAACTGAAGGACACGGTGATCTCTGGAAGAACTGTTT GGAGAAATCCGGATGGTTATCTACCAGGGAAGATGATGCCGTTGATGACATTTTATGGTTTAATGCCTTTGGCTTACCTT TTTCTTGGCATGGTGTGGTTTCTTCGGTTTGTGCAGTATTGGAAAGATGTGATCCAGTTACATTACCACATTACTGCAGT TATTGGCCTTGGCATGTGTGAAATGGCTCTTTGGTATTTTGAATATGCAAATTTCAATTCCACTGGAAGCAGGCCAATGG GAATTACACTATGGGCTGTTACCTTCACTGCTGTCAAAAAGACAGTCTCGAGGCTTCTTCTTCTGGTAGTTTCAATGGGT TATGGCATTGTTCGTCCAACTCTTGGTGGCATAACCTCAAGAGTCCTTCTTCTAGGTGTGGTGTATTTTGTGGCCTCAGA AGCACTGGAGCTGGTGGAACATCTGGGTAATATTAATGATTTTTCTGGGAAAGCGAGGCTTTTCCTAGTGCTTCCTGTGG CTCTGTTGGATGCATGCTTTATTCTTTGGATCTTTTCATCATTATCTAAAACTCTGGAGAAGCTTCAGATCCGGAAAAGT ACGGCAAAACTTGAATTGTACAGGAAATTTACGAATTCCCTTGCAGTGACAGTGCTTCTTTCAGTAATATGGATTGGCTA TGAGTTGTACTTCAATGCATCTGATCCTTTAAGTGAACTGTGGCGAAGAGCTTGGATCATCCCAGCTTTCTGGACTTTGC TTTCTTATGCTCTCCTGCTAGTGATCTGCCTTCTCTGGTCCCCATCTCATAATCCTACCAGATACGCATATGAGACTGGG GATGACTTTGATGAGGAGGTTGTCCGACTTGCTGGAAGTGGAATTAAAGTGTCTGGGGATATGTCAATCTTACTAGAAAG AAAGGCATCAGGTCCCACAGAACATCATGTGTTTGGACTTGGAGAAGAAAGAGAGGAGGACAAGAGGGAGTGA
Protein sequence (LotjaGi1g1v0132100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSWIRFESITFRRTKESAEKTNPMQQKTGLVEAIIVKVRDRSNIGGAYLNSDAICCTPELAKAGSCKLGEVIIRENPDDP SGPRRLQTFFEGQNEEATMVIQTVDITSTGMYYLYFMFCDPQLKDTVISGRTVWRNPDGYLPGKMMPLMTFYGLMPLAYL FLGMVWFLRFVQYWKDVIQLHYHITAVIGLGMCEMALWYFEYANFNSTGSRPMGITLWAVTFTAVKKTVSRLLLLVVSMG YGIVRPTLGGITSRVLLLGVVYFVASEALELVEHLGNINDFSGKARLFLVLPVALLDACFILWIFSSLSKTLEKLQIRKS TAKLELYRKFTNSLAVTVLLSVIWIGYELYFNASDPLSELWRRAWIIPAFWTLLSYALLLVICLLWSPSHNPTRYAYETG DDFDEEVVRLAGSGIKVSGDMSILLERKASGPTEHHVFGLGEEREEDKRE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 148 | 148 | - | – | |
| PANTHER | 4 | 449 | 446 | 2.6E-246 | ||
| PANTHER | 4 | 449 | 446 | 2.6E-246 | – | |
| Pfam | 106 | 392 | 287 | 9.0E-105 | ||
| TMHMM | 149 | 171 | 23 | - | – | |
| Phobius | 149 | 168 | 20 | - | – | |
| Phobius | 169 | 179 | 11 | - | – | |
| TMHMM | 178 | 200 | 23 | - | – | |
| Phobius | 180 | 200 | 21 | - | – | |
| Phobius | 201 | 214 | 14 | - | – | |
| TMHMM | 215 | 237 | 23 | - | – | |
| Phobius | 215 | 236 | 22 | - | – | |
| Phobius | 237 | 247 | 11 | - | – | |
| Phobius | 248 | 265 | 18 | - | – | |
| TMHMM | 250 | 272 | 23 | - | – | |
| Phobius | 266 | 284 | 19 | - | – | |
| Phobius | 285 | 305 | 21 | - | – | |
| TMHMM | 287 | 309 | 23 | - | – | |
| Phobius | 306 | 325 | 20 | - | – | |
| Phobius | 326 | 345 | 20 | - | – | |
| TMHMM | 330 | 349 | 20 | - | – | |
| Phobius | 346 | 364 | 19 | - | – | |
| TMHMM | 364 | 386 | 23 | - | – | |
| Phobius | 365 | 386 | 22 | - | – | |
| Phobius | 387 | 450 | 64 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0132100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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