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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0135200 |
| Transcript ID | LotjaGi1g1v0135200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription initiation factor IIA subunit 2; TAIR: AT4G24440.1 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S); Swiss-Prot: sp|Q39236|T2AG_ARATH Transcription initiation factor IIA subunit 2; TrEMBL-Plants: tr|I3S8P2|I3S8P2_LOTJA Transcription initiation factor IIA subunit 2; Found in the gene: LotjaGi1g1v0135200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:21785286..21789684) extracted from Lotus japonicus Gifu genome v1.2.
GGGTATAAAAAGCCCCAAATTTCTCCGCTCCCAAACGCAATCGAGCCAAACCCGAACGTTAACTGAGACCAGAAGAAAAG CAAAAACATCCACTCCCTCCTCTTCACCAGTCTCCAACGTCGCCACCCGATTCGTAATCAGAATCTCAACCCTTCGATCT CCATTTTCGTTTTGATTCACCGTTCTTACTGTGATTTTGATTTCGATTTCTTTCCAATTTTCTGACTCTGAATTTTTCTT CATGTTTCGATTCTGTTGTTGTTGTTGTGATAATCTGAGTTAACCGTTGCAGATCGCGTTTCGCAAAATGGCGACGTTTG AACTGTACCGAAGGTCGACGATCGGAATGTGCCTCACGGAGACTTTGGATGAGATGGTTCAGAATGGTACTCTCAGCCCT GAGCTTGCGATTCAGGTTCTGGTTCAGTTCGATAAGGTAGCGATTCGTGAATTTTGTGTTAGGATGATGCTAGGGTTTCA GTTTCTGGATCTGTTTTTTGACTTTTTTTATTAATATTTTTCATTTCATTGGCATGTTGGATTTCTAGTCTATGACTGAG GCTCTGGAAACTCAAGTTAAGAGCAAGGTCTCGATCAAGGTAACACCGGTTTTTATTCAGTGTAAAATGTTGAATTTTGT GTATCGGGGATCGCGGTCGTTGTTAGGATGTGCTAGGGGCATTACTATTCTGTGGTTAGTGTTGGATGTTACTTGAGCTG AGCTTGAGATCAGCTCATCTTAAGTGCATGAGCTAATGGAGCCTGAGCTTTGTTAATTGAATATGGTGTGGATGAATTAG TTAGGATCGACTTGTTTGTATACAATTTTTTTGCAAGGCTGTCTCTTAGTCATAGGTGTAGCTTTGAGACTAATCTCCAT GTGGACAATGGTCACATGACCACTAAAAACAAGAGCACAGGTGGATTTAATCTTGACTTGCAATGAATTTGTAAATTTGT ATGAAGAATTAAGAAAAATAGTTACTAGCAATAAATTTGTACAAGTTTTATCTCTGTTGCTATTTTCTTTTTATCTCAAA CTGTTCAAGTTTTAAACATCCTCTCTTCTTCATCCTTAATTTCTGATTTCTTATTCTTAAACCAGTCTACCTTTAATTGA AGTCTTAAACTTATTTAGCTCCTCACTTTTGATATTACGAACCCATGTATTTAGCTTTTAAAACTATGATATTTTAATTG TTAATCATGAATGTCTTCAATTTTGAAAAATGTTTTACTTGTTAATCATGAATTTCTTTTACTTTGAAAATTGGTTCACT TTGGAGCATTTATATATATGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCACACACACACTCACACAGAGAAGGGGCGGGG GGATCTACTTTAATTGGACAGTGAGAGGAGGCAGTTTTGAGCACAGGATCTTACCATGATCAAAATTCAAACATAAAGTC ATGTGGCTTTTTTAAGTGGTGATATTATATAAAAAATGCTTATTGATGTATTAAGTGTATTGAGTTTAGGTTTAGCATGT GACTGTTTGAGCTTGGTATATTTTCAAATAAACAAGCTAAAGTTCAGTTAAATTGTGTTGTTAACTAATTGAGCTGCAAG CAAGCTCACAAGCTGATTTTGCATATTTCCTGTCCTGATTTTAGGTTCATGGAACTTAATTTTTGTTTCTTCTGTAATAG GCTTGCTTGCTAGCTACTCCCTCTAAATACTTTTATTTGTCATGTTAATAAATAAGTGAAATATTTTTTTCTTGCTCTAT CCTTACTCCTTAGTATCAATTAATGAAATAGGATATTGGTAGTGTACTAAAATATGTTGAGTAATATTCAAGGATAATTA AGTGAAACATAGTTATATTTGCTTATAATAGAATATTTAATAACTTACGTAGTTCTTTTGCCATGATGACCTTAAATGAC ATAAAAGGTGCCATGATGACCTTAAATGACATAAAAGGAACATAAAGGATACTACAAGACATGTAAGGAGAGTTATATTG GGATTCTTAGTTGGAAAAAGCTGATCATGATGTGTGTTTTCCTTCAGTTAATGGGTCAAAATGCTCTAATTGTTTGTTGG TGCCAATGAATAGATAGATTTGGTTTGGGTATTTTCATGTTACCTCCGAAAATGTTTTTCCTCTTTGCGATGATTTAAGT ACTCTGACTATAACGAATGGCTAAAAACATGCATGAAAATTAACACCAGGAGTAAAACTAATATAGAATCTTAAGACTTG AGTATATAATGTGGAGATTTTGATGATCAGCATTATGAGTACCTTTATAAAATGGAACAAGAGTAATTTTATTCACATAT TTTTCGTGAGTTTTTGTTTGTATTCACAATTAGGATTGTGAAAGTGCAGATTTTTTCATTGTATTACCTTGAAAGAAACC TCGTTTTTATTTGAAATTCTTAAACCTCGTTGTTTTTGTTCCAAAGGGAAATCTAGTAAACTGCTTACTATTTGAATATT CAAGGACTATAGAACAGTTAAAGCTTACTATTTAGTATTTTGCCAAGTATGGGAGTTTCTCCCTGAGAGAATACCCTATC CAAGGACTGGTTTTCTTTTCTTTCTTTTTTTTCCTATGAAAAGGTTCTCTCTTTAGATTTTTTGGTTATTGTCACAATTG TATATTGGTTTTCTGTGTGGACTTAAAATTTAATTTATGACTGTATAATGCATGCTGTCATTTGTTACTTAATAACAAGA CATTGGTCTTCCTATTTACCAAACTATCAATTCAACACGCAAGATTTTGAGAATGTTTCATGCTTGCCCAAGCTTCTTGT TAAGCTCTGCAACAATTCCCAGGCTGATTGTGTTATAAATAAAATGTACAATTGCTAATAATATTCTGTATTTCTGTTAT CTATATCTTTTATTAGTATGTGTATAGCAGAAATAGTCAATAACGGAAAAGTAAATTGAGTTATCCTCCTAGAATGCCAA AAAACAAAACAAGTTTAGAAAAAGAACTATACTATCCCAGAAGTGTCCATTGACACTGACTACAAGATAGTTGTCTCTGT AAATTGATATTATTACGCTCTTCCTTATTCATATAGGTCTGAAGAATGTTAATCTTCTCATATTTGTCTTTTTGAGCTGA CCTATACTTTTTCTAGGATTTTAGTTTCTTATGTTGATCCAAAGCACTATATCAACATAATGGTTAAGATAGTGCTTGGC ACATGTAGATAACAGAGCGAAATAGCCTATGAATTTTGTTTGTTAATATGCATCAAATCAAACATAGGATTGAACTCACA TGTCCTATTCTTTTATCTTCTAGCTTGTCTACCACATGCTACCTTAATTTTTCTGTATGAATACATGTTTGAATGGCATT ATTTCTTCTTTCATGGAATATTCAATGTTAATTTCACTGGAGGCTGCTATTTCATATTGCTAGTGTGTTTGGCTGTAGTT ATCCTTAAACAACTTGTGGGCGGTCAAACCCCACTCAACAGTCAACAACACCTTTGACATCTGCTCATTTTGTGGTTAAT ACTGCATATATGATTTAGATTTGCAAAAATACGAGTTCTGCTGAAGCTCAAGTCTTCATAAGTAATGAAAGTAATTATTC ACCTGTTCTTCCTCCTGAGCTTTCTTCTTTTTCTTTTCAATTTCCAATCACAGGGACATCTCCATACATATAGGTTTTGT GACAATGTTTGGACTTTCATCTTACAAGATGCTTTGTTCAAGAATGAGGACAACCAGGAGAATGTTGGACGGGTTAAAAT AGTGGCGTGTGACTCGAAGTTGCTCACACAATGAATTGCCAATTTCTGCCACATTGTCAACAAGGAGAAATTGTTGTCAA TCATCTGCTGGTAACTATGGGAATGTTGGGTCAGATTAATGTTACAGGAACTAGCATCTTTATAGTATGTTACATATTTA AATGTGATCGATCTTCATGTCATTAGGTAATTAATGTTACATTAAAATTTGACAATATCTCTTCAGAGATAGATGTACTC TTTTTTAAACTGTACTAAATTATATTCTTCCATGAACACTGGTACATGAATTTTTCTCCAGCGAACTTCTTGTTCACAGG CTACGAAAAAAAGTCTCTCAGTGAGTAGTTTATAATGGAGAAAAATAAGATTATCTACCATTGAATCTGAGTTAAATAGT ACAATTAAATGGTATTGATGCAAGTTTAGATTTTTATCCGATACACTGGCTATCATAACGACTAAAAAATAGAGTAAGCT TTGGGTTACCCTAGTCACTTTCTAAGAGGTGATATTGTTCATGTTTCCACATGATTACTTCCCAATCAACATCATTATAT CTGGGAAATCTTGGAGAAAGCTTCCATTACTAATTGCAAGTATGTCACCACTCTAATAGGAATAAAACTTGTTCATCTC
CDS sequence (LotjaGi1g1v0135200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACGTTTGAACTGTACCGAAGGTCGACGATCGGAATGTGCCTCACGGAGACTTTGGATGAGATGGTTCAGAATGG TACTCTCAGCCCTGAGCTTGCGATTCAGGTTCTGGTTCAGTTCGATAAGTCTATGACTGAGGCTCTGGAAACTCAAGTTA AGAGCAAGGTCTCGATCAAGGGACATCTCCATACATATAGGTTTTGTGACAATGTTTGGACTTTCATCTTACAAGATGCT TTGTTCAAGAATGAGGACAACCAGGAGAATGTTGGACGGGTTAAAATAGTGGCGTGTGACTCGAAGTTGCTCACACAATG A
Protein sequence (LotjaGi1g1v0135200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDA LFKNEDNQENVGRVKIVACDSKLLTQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 105 | 105 | 3.2E-60 | – | |
| PANTHER | 1 | 105 | 105 | 3.2E-60 | ||
| PIRSF | 1 | 106 | 106 | 8.1E-49 | ||
| Gene3D | 3 | 54 | 52 | 1.1E-23 | ||
| CDD | 4 | 51 | 48 | 1.80995E-22 | ||
| Pfam | 4 | 49 | 46 | 3.7E-23 | ||
| SUPERFAMILY | 4 | 54 | 51 | 1.6E-17 | – | |
| SUPERFAMILY | 52 | 102 | 51 | 2.88E-20 | ||
| Gene3D | 55 | 106 | 52 | 2.7E-24 | ||
| CDD | 57 | 102 | 46 | 1.18995E-22 | ||
| Pfam | 59 | 101 | 43 | 3.9E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Transcription factor TFIIA complex | A component of the transcription machinery of RNA Polymerase II. In humans, TFIIA is a heterotrimer composed of an alpha (P35), beta (P19) and gamma subunits (P12). | ||
| Biological process | Transcription initiation from RNA polymerase II promoter | Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription. |
Expression pattern of LotjaGi1g1v0135200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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