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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0135200 |
| Transcript ID | LotjaGi1g1v0135200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription initiation factor IIA subunit 2; TAIR: AT4G24440.1 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S); Swiss-Prot: sp|Q39236|T2AG_ARATH Transcription initiation factor IIA subunit 2; TrEMBL-Plants: tr|I3S8P2|I3S8P2_LOTJA Transcription initiation factor IIA subunit 2; Found in the gene: LotjaGi1g1v0135200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:21785593..21789079) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGACGTTTGAACTGTACCGAAGGTCGACGATCGGAATGTGCCTCACGGAGACTTTGGATGAGATGGTTCAGAATGG TACTCTCAGCCCTGAGCTTGCGATTCAGGTTCTGGTTCAGTTCGATAAGGTAGCGATTCGTGAATTTTGTGTTAGGATGA TGCTAGGGTTTCAGTTTCTGGATCTGTTTTTTGACTTTTTTTATTAATATTTTTCATTTCATTGGCATGTTGGATTTCTA GTCTATGACTGAGGCTCTGGAAACTCAAGTTAAGAGCAAGGTCTCGATCAAGGTAACACCGGTTTTTATTCAGTGTAAAA TGTTGAATTTTGTGTATCGGGGATCGCGGTCGTTGTTAGGATGTGCTAGGGGCATTACTATTCTGTGGTTAGTGTTGGAT GTTACTTGAGCTGAGCTTGAGATCAGCTCATCTTAAGTGCATGAGCTAATGGAGCCTGAGCTTTGTTAATTGAATATGGT GTGGATGAATTAGTTAGGATCGACTTGTTTGTATACAATTTTTTTGCAAGGCTGTCTCTTAGTCATAGGTGTAGCTTTGA GACTAATCTCCATGTGGACAATGGTCACATGACCACTAAAAACAAGAGCACAGGTGGATTTAATCTTGACTTGCAATGAA TTTGTAAATTTGTATGAAGAATTAAGAAAAATAGTTACTAGCAATAAATTTGTACAAGTTTTATCTCTGTTGCTATTTTC TTTTTATCTCAAACTGTTCAAGTTTTAAACATCCTCTCTTCTTCATCCTTAATTTCTGATTTCTTATTCTTAAACCAGTC TACCTTTAATTGAAGTCTTAAACTTATTTAGCTCCTCACTTTTGATATTACGAACCCATGTATTTAGCTTTTAAAACTAT GATATTTTAATTGTTAATCATGAATGTCTTCAATTTTGAAAAATGTTTTACTTGTTAATCATGAATTTCTTTTACTTTGA AAATTGGTTCACTTTGGAGCATTTATATATATGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCACACACACACTCACACAG AGAAGGGGCGGGGGGATCTACTTTAATTGGACAGTGAGAGGAGGCAGTTTTGAGCACAGGATCTTACCATGATCAAAATT CAAACATAAAGTCATGTGGCTTTTTTAAGTGGTGATATTATATAAAAAATGCTTATTGATGTATTAAGTGTATTGAGTTT AGGTTTAGCATGTGACTGTTTGAGCTTGGTATATTTTCAAATAAACAAGCTAAAGTTCAGTTAAATTGTGTTGTTAACTA ATTGAGCTGCAAGCAAGCTCACAAGCTGATTTTGCATATTTCCTGTCCTGATTTTAGGTTCATGGAACTTAATTTTTGTT TCTTCTGTAATAGGCTTGCTTGCTAGCTACTCCCTCTAAATACTTTTATTTGTCATGTTAATAAATAAGTGAAATATTTT TTTCTTGCTCTATCCTTACTCCTTAGTATCAATTAATGAAATAGGATATTGGTAGTGTACTAAAATATGTTGAGTAATAT TCAAGGATAATTAAGTGAAACATAGTTATATTTGCTTATAATAGAATATTTAATAACTTACGTAGTTCTTTTGCCATGAT GACCTTAAATGACATAAAAGGTGCCATGATGACCTTAAATGACATAAAAGGAACATAAAGGATACTACAAGACATGTAAG GAGAGTTATATTGGGATTCTTAGTTGGAAAAAGCTGATCATGATGTGTGTTTTCCTTCAGTTAATGGGTCAAAATGCTCT AATTGTTTGTTGGTGCCAATGAATAGATAGATTTGGTTTGGGTATTTTCATGTTACCTCCGAAAATGTTTTTCCTCTTTG CGATGATTTAAGTACTCTGACTATAACGAATGGCTAAAAACATGCATGAAAATTAACACCAGGAGTAAAACTAATATAGA ATCTTAAGACTTGAGTATATAATGTGGAGATTTTGATGATCAGCATTATGAGTACCTTTATAAAATGGAACAAGAGTAAT TTTATTCACATATTTTTCGTGAGTTTTTGTTTGTATTCACAATTAGGATTGTGAAAGTGCAGATTTTTTCATTGTATTAC CTTGAAAGAAACCTCGTTTTTATTTGAAATTCTTAAACCTCGTTGTTTTTGTTCCAAAGGGAAATCTAGTAAACTGCTTA CTATTTGAATATTCAAGGACTATAGAACAGTTAAAGCTTACTATTTAGTATTTTGCCAAGTATGGGAGTTTCTCCCTGAG AGAATACCCTATCCAAGGACTGGTTTTCTTTTCTTTCTTTTTTTTCCTATGAAAAGGTTCTCTCTTTAGATTTTTTGGTT ATTGTCACAATTGTATATTGGTTTTCTGTGTGGACTTAAAATTTAATTTATGACTGTATAATGCATGCTGTCATTTGTTA CTTAATAACAAGACATTGGTCTTCCTATTTACCAAACTATCAATTCAACACGCAAGATTTTGAGAATGTTTCATGCTTGC CCAAGCTTCTTGTTAAGCTCTGCAACAATTCCCAGGCTGATTGTGTTATAAATAAAATGTACAATTGCTAATAATATTCT GTATTTCTGTTATCTATATCTTTTATTAGTATGTGTATAGCAGAAATAGTCAATAACGGAAAAGTAAATTGAGTTATCCT CCTAGAATGCCAAAAAACAAAACAAGTTTAGAAAAAGAACTATACTATCCCAGAAGTGTCCATTGACACTGACTACAAGA TAGTTGTCTCTGTAAATTGATATTATTACGCTCTTCCTTATTCATATAGGTCTGAAGAATGTTAATCTTCTCATATTTGT CTTTTTGAGCTGACCTATACTTTTTCTAGGATTTTAGTTTCTTATGTTGATCCAAAGCACTATATCAACATAATGGTTAA GATAGTGCTTGGCACATGTAGATAACAGAGCGAAATAGCCTATGAATTTTGTTTGTTAATATGCATCAAATCAAACATAG GATTGAACTCACATGTCCTATTCTTTTATCTTCTAGCTTGTCTACCACATGCTACCTTAATTTTTCTGTATGAATACATG TTTGAATGGCATTATTTCTTCTTTCATGGAATATTCAATGTTAATTTCACTGGAGGCTGCTATTTCATATTGCTAGTGTG TTTGGCTGTAGTTATCCTTAAACAACTTGTGGGCGGTCAAACCCCACTCAACAGTCAACAACACCTTTGACATCTGCTCA TTTTGTGGTTAATACTGCATATATGATTTAGATTTGCAAAAATACGAGTTCTGCTGAAGCTCAAGTCTTCATAAGTAATG AAAGTAATTATTCACCTGTTCTTCCTCCTGAGCTTTCTTCTTTTTCTTTTCAATTTCCAATCACAGGGACATCTCCATAC ATATAGGTTTTGTGACAATGTTTGGACTTTCATCTTACAAGATGCTTTGTTCAAGAATGAGGACAACCAGGAGAATGTTG GACGGGTTAAAATAGTGGCGTGTGACTCGAAGTTGCTCACACAATGA
CDS sequence (LotjaGi1g1v0135200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACGTTTGAACTGTACCGAAGGTCGACGATCGGAATGTGCCTCACGGAGACTTTGGATGAGATGGTTCAGAATGG TACTCTCAGCCCTGAGCTTGCGATTCAGGTTCTGGTTCAGTTCGATAAGTCTATGACTGAGGCTCTGGAAACTCAAGTTA AGAGCAAGGTCTCGATCAAGGGACATCTCCATACATATAGGTTTTGTGACAATGTTTGGACTTTCATCTTACAAGATGCT TTGTTCAAGAATGAGGACAACCAGGAGAATGTTGGACGGGTTAAAATAGTGGCGTGTGACTCGAAGTTGCTCACACAATG A
Protein sequence (LotjaGi1g1v0135200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDA LFKNEDNQENVGRVKIVACDSKLLTQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 105 | 105 | 3.2E-60 | – | |
| PANTHER | 1 | 105 | 105 | 3.2E-60 | ||
| PIRSF | 1 | 106 | 106 | 8.1E-49 | ||
| Gene3D | 3 | 54 | 52 | 1.1E-23 | ||
| CDD | 4 | 51 | 48 | 1.80995E-22 | ||
| Pfam | 4 | 49 | 46 | 3.7E-23 | ||
| SUPERFAMILY | 4 | 54 | 51 | 1.6E-17 | – | |
| SUPERFAMILY | 52 | 102 | 51 | 2.88E-20 | ||
| Gene3D | 55 | 106 | 52 | 2.7E-24 | ||
| CDD | 57 | 102 | 46 | 1.18995E-22 | ||
| Pfam | 59 | 101 | 43 | 3.9E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Transcription factor TFIIA complex | A component of the transcription machinery of RNA Polymerase II. In humans, TFIIA is a heterotrimer composed of an alpha (P35), beta (P19) and gamma subunits (P12). | ||
| Biological process | Transcription initiation from RNA polymerase II promoter | Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription. |
Expression pattern of LotjaGi1g1v0135200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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