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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0137300 |
| Transcript ID | LotjaGi1g1v0137300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | hAT transposon superfamily; TAIR: AT5G33406.1 hAT dimerization domain-containing protein / transposase-like protein; Swiss-Prot: sp|Q6R2W3|SCND3_HUMAN SCAN domain-containing protein 3; TrEMBL-Plants: tr|A0A151TR74|A0A151TR74_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0137300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:22422429..22425097) extracted from Lotus japonicus Gifu genome v1.2.
TAAACCCTAGAGAGAACCTGCGCAGCTGCTGTCTCAACCCACCGTCGTGCTGCTGCTTTTGCCACCTGTCGTCGCGCCGC CGGCCACCGCTGCAGTTGCCTCACCCTCCGTCGCTGCTGCAGGTTTTGCGATTCTCTGTCAGTTCTAGTTGGTGAATCTC TAATTAGAAACTATTACATTTTCTTCTTCAATTTCGATAGGATGTGAATACCACGCACTCTATATCTTCAATTTCGTACG TTAGGATGTGAAACTATTACATTTTCTCTAATTAGAAACTAAACTATTACGTTTTCTCCAGATATTCATCTTCTGATATA CTAGTATATTCATATATGATATACTATTATACTTGTCCAATTGTTCAAATTTATATTCTGATATAATATTTTGAATATTT TGATATACGCCAAGAGTCCAAGTTGGTTCTGAATTCAAATTCATCATGTTGTTGCTAAAATATTTTTAAAATTATGCTTT CAGTTTCACTTCAGAATCCAAAATGTCCGGGGCTGGTGGTTAAGATGCTTCAAGCAACACTGTTGTTGGCCTGCTAACAC TAGAGAAGAAAGAATGCCCCTGGAAAAAGGACTGATCCTGGGTGGAAACATAGGATTGATATTTTAGGCAATGGAAAAAA GGTTAAATGTACCTATTGCGCAAAAGAATTTTCAGGGACTTACAGGTTCAAGCATCATCTTGTTGGTACAAGCATTGATT CAGAACCATGTACTACTGTGCCTGAAAATGTAAGGGACTCTATAAGGAAAATTGTTGTGGAGGTTCAAATTGCATCAACG AAAAAGAGAAATTTGATTGATATTGAGGAAGACTATTAACAAGTGGAGGTTGTTGAAACTCAAATTCAGAGAAAGGGCAA AAACATTTTCAACATGCCATCAAAGTCAAAAGCAAGAGTGGTGGAAGTGGAGCGGTGCAACAAACATTGAATAATTAGGT GAAAAAGGACTTGAAGTCGGTGGTTGATGATGACATTGCTGAATTTTTCTACACCAGTGCTATTCCTTTTAATTGCATTA AAAATCCTGCTTTTGCAAAGATGTTGGAGTCTGTTGCAAAATATGGAGTTGGCTTCAAGCCACCCTCTTATCATGACCTT AAAGAAAAACTTTTGAAGCGAGCAGTAAGTCGAACTGATGCAATGCTTGAATCATTTAAGGAGGAGTGGAGAAGGACAGG TTGCACAATCATACTTGACTTTATCTTGCAAACATCAGTGCAGAACTTGTTTAGGTCAGATGACTAGAAGTCAAGTAAGT TTTCTACTATGGCAAAGGGGAAAAGGGTGCAAAGTATAGCTTTGGACCATCGGTTTTGGAAGAACATAATCACATGTCTC AAGGCTGCTGGTCCTGTGATAGGAGTTCTTCGTAGGGTGGATTCTGATGAAAGCCCTGCAATGAGTTTCATATATAATGC GATGGACGGCGCTAAGGAAAAGATAAAAAAGAACTTCAAGAATATTAAGAAGAGGTAAATAAATGTTTTTAAATATCTTC TAGATTTCTTCTCTTCAAATATCTTCTAATTAATTTGTATTTGACGTCTTGTAGTTATGAGCCTGTATGGAACATCATAG ATCAGAGGTGGTATAAACAACTTCATAGGCCCTTGCACGCAACTGCATATTACCTCAATCCTCAATTACATTGGGAGCCT AATTTCAAAAAAGATGATCTTGATGTCAAACAAGGGCTATACAATTGTATAGGAAGCATGGTGAGCTCTCACAGTGAGAG GAATAAGATTCATGCTCAAGTTAAGGACTTTCATTATATGAAAGACATGTTTGGACTAGGTGCTGCACAAGATGCTAAGA AGACTACACCTCCAGCAGAATGGTGGGACTTTTATGGAGATCAATGCCCCCTGAACTAAAGAAGCTTGCTATTCAGATTC TAAGCTTGACTTGTAGCTCTTCCGGATGTGAGCACAATTGGAGCTCATTTGAAATGGTAAGCTTTACTTTAAGGTCTTAT AATTTTAAACTTGACTTTGTTTATAGGTTTTAATTTTATATACTTATGTTTTATTCTAGGTTCATACAAAAAAAAGGAAT AGATTGCACCAACAGAAGATGAATGACTTAGTTTATGTCATGCACAACTTGAAGTTGAAGCGTAAAGGAACAAAGAGGAA AGTGTTTATCCCTCTTGAGGATATTGAATCTGATAATGAATGGATAACAAATGTTGGAGATGTAGAAGGAGAAAGAAACA ATGTTAATGTCTATGAAGATGATGATGTACAACATGTTGATGATGATTTGGTTGCAAGCTCAAGTAATCCACCTACCCTT GATGATGATTACATTCAAGAAACATTTTCATCTGAGGAAGAGGAGAACATGGATGATGATGAAGGAGAGTCTGAAGATGA TGACATGGAAGATGTTTGATCATTTGAAGTTTAAAGATTATGAATTATGCACTATTGATTTTTATTTTTAGCTCTCTTTA AGACTTTGTTATGAATTACGTACTCTTGGAGGTACTTTGGTTGTTTACATGCTTTGTTGAACTTTGATGCACTCTTGGTT GTTTATGTGTTATGTTGAACTTTGCTTTATTATGAAGTTGAATGTTGAATTTATTTAGTTAATTTCTCCTTCATGGTTGT AGTATGTATTTTTATACACTATGACAGGT
CDS sequence (LotjaGi1g1v0137300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGGACTTTTATGGAGATCAATGCCCCCTGAACTAAAGAAGCTTGCTATTCAGATTCTAAGCTTGACTTGTAGCTC TTCCGGATGTGAGCACAATTGGAGCTCATTTGAAATGGTTCATACAAAAAAAAGGAATAGATTGCACCAACAGAAGATGA ATGACTTAGTTTATGTCATGCACAACTTGAAGTTGAAGCGTAAAGGAACAAAGAGGAAAGTGTTTATCCCTCTTGAGGAT ATTGAATCTGATAATGAATGGATAACAAATGTTGGAGATGTAGAAGGAGAAAGAAACAATGTTAATGTCTATGAAGATGA TGATGTACAACATGTTGATGATGATTTGGTTGCAAGCTCAAGTAATCCACCTACCCTTGATGATGATTACATTCAAGAAA CATTTTCATCTGAGGAAGAGGAGAACATGGATGATGATGAAGGAGAGTCTGAAGATGATGACATGGAAGATGTTTGA
Protein sequence (LotjaGi1g1v0137300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVGLLWRSMPPELKKLAIQILSLTCSSSGCEHNWSSFEMVHTKKRNRLHQQKMNDLVYVMHNLKLKRKGTKRKVFIPLED IESDNEWITNVGDVEGERNNVNVYEDDDVQHVDDDLVASSSNPPTLDDDYIQETFSSEEEENMDDDEGESEDDDMEDV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 30 | 30 | - | – | |
| Phobius | 1 | 15 | 15 | - | – | |
| ProSiteProfiles | 1 | 30 | 30 | 5.0 | – | |
| PANTHER | 10 | 113 | 104 | 3.4E-28 | – | |
| PANTHER | 10 | 113 | 104 | 3.4E-28 | – | |
| Pfam | 11 | 63 | 53 | 1.1E-6 | ||
| SUPERFAMILY | 11 | 67 | 57 | 7.59E-14 | ||
| Phobius | 16 | 25 | 10 | - | – | |
| Phobius | 26 | 30 | 5 | - | – | |
| Phobius | 31 | 158 | 128 | - | – | |
| MobiDBLite | 116 | 131 | 16 | - | – | |
| MobiDBLite | 116 | 158 | 43 | - | – | |
| MobiDBLite | 132 | 158 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi1g1v0137300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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