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LotjaGi1g1v0137800.1

Overview

Field Value
Gene ID LotjaGi1g1v0137800
Transcript ID LotjaGi1g1v0137800.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Carbonic anhydrase; TAIR: AT4G33580.1 beta carbonic anhydrase 5; Swiss-Prot: sp|Q94CE3|BCA5_ARATH Beta carbonic anhydrase 5, chloroplastic; TrEMBL-Plants: tr|V7B641|V7B641_PHAVU Carbonic anhydrase; Found in the gene: LotjaGi1g1v0137800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:22496405..22501069) extracted from Lotus japonicus Gifu genome v1.2.

CTTCCATGTCCTCTTCCTTATCCTTGTCCTCTTGCAATGAATGGACACGAGAATCTGGTCATCCCACGACATGAACAATC AATGAAGTGGAATGAACTATAATTAAATACAAAGACACACATTAATTTTATAATGATAATAATGATATAAAATTTATAAG ATAAATGGTTTGCATTGTGATGCAATGGTAGTTTGCAGTTTGTAATAAGCAGTTGTAAGAAAAAAGGGAAGAGATGGTGT GGCTAATTCGTAAGCAGCAACTTTCAATTCTTCACTTTAATTAATTCCTTCCTTTTTATTTTGGTTAATAATTTAATTGA ATCATTTGTGATCATTGCAGGGTCTAGAATGAGTTCAATTCTACGATCAAATGCACCTTTAGTGGGTTCATCCTCTACAA TTTTTACTTCCACGAGAACTCCCTGGTCAAAATTTGTGAGCTTTTGCACTCTTGTTAAGCTTCTAATCATGTGGTTTTCT GCTTTCCCTTTTCGTATGCTGTTAAAAGATGTTGATAATCAAACATTGGTTTCTTCATTTTTTTTTTTAGCTTTGATTGT TGATGTTTGTTTCAGTGTTTGGTTCTGATGTTGTTTTCTTTGCTTTCCTCTCGCGTTCTTGGTTTTTTAGATAAAAACGG ACAGTTGCCATGAAGCAGCAGCAGTATCATTGCCTTCATTGGAGTAAGTTAGAGTTTGTGATACTAGCTAACAAGTTTAT ACAATTATACTTGAATTATGTTGAAACTCTTGGGTTTCACTTTGTGGGCTTCTAACTTCTTGCAAAAAGGCTAGTTCAGT TGTTATTTTCCTGCTGTTTTTACTCAGCTGCAATGAATTTTATGGTTAGAAAAGTTATCTTCTGCTTGTTTGGTTTGAAA TTGTGCTTCTTTTTGGGCTCTTCACTTGGAATACTGAATTCTTTGCTTGAAAGAAAATGTGACAAATATAATATCAACCA TTTATGTGTTCCTTTTAGCATAGTTGGCTCATGACATGGTATCGTGGATTCTATGACCAAGTACTGTGTAGCAGTAGCTT GATCCTTGTTGCCCAATTATTTTCAGAAAAAGTTTAATTTAAGCACAGTATAGGTAAATCTGTGCATTGTCCATGCAAGA GTCAATTGGATATCTGACTAAGCATACACTAAGGCCGATGGACTTTTACATGAAGGGACGTGTTAGAAATATATTAAAAC TGGTCACCGACATCTTAAGCTTTTTTAGGTAGTTGGTTACATTAACAACCCTATAAATTCTGAGCAAATGAAATAATTAA AATAACCCTATAGATTGAATACTTTATTTGAAGTAAAGAACTCTTTTTGATCTTCACTAGAAAAGCTTCGCACATTTGTG TGCTAGATCATGCATAGCAATTATTTTCATGGTAATTCAGATTGCTGGCATACTATAAGCAACTTCCACAGAATAGCTTA TTCTTTTAAATCCATAAAATGGTGAACTTATTTACATGGAATACTATAACAATGAGTCTATATTTTCTTACAATACTGAC AGTCGAAGTATTGTTGTCTGCACTTCTCTTTAAGCAGTATATGTCAAATTATAAATTTAGCTGAATGATATGAGTGAAAA GTGAAAGTTGATTACAATTATATCATTTTTCATAGGGAGAACCAACCAGAGGTTCCAACTAATTGTCTCAGGCTTGATCG AGAAAACAAAGGTCTTGACATAGGGAATATGACTGAAATTGATGGCCACCAGAATTTATTTAGCTTGATGAAACAGAGGT TTCTAAGTTTCAAGAACCAAAAATATATGTAAGAGCTGTGTTGCACATTTTTCGCAGTTTCAGCTTGCAAAAATCAGTTA CTTGTTTTTAGTCTAGTATCTTAATAAGCTATTTTTCTTTTAGACAGAAAAGAGTTGGAGCGTTTTCAAGCTCTTGCTAA AGTTCAATATCCAAAGGTGATAACAAATTGATTTATGTTGTCCAGTCAATTATTTGTTACAGAACTGTTCCCTCTTTTTC ATTATATTTTAGCTTAATTTCTTTCGTTCCTGTATTCTTTACTGCTCCATGTTGGTCTTGACTCTTAACTGATAAGTCCA AGTACAGTTTTTCGTAATTGCTTGTGCAGACTCTAGGGTATGCCCCTCTAACATATTAGGATTCCAACCTGGAGAAGTAT TCATGATTCGTAACATCGCCAATCTTGTACCTGTCATGAAGGTATTTGCATGATTCCTTCAAATTATTTTTCCCTCTATA AACAGGACATTCAAACTATTTTTAATTGTTATTTCTCTCTCATAATTGTTCTCTTCTGTTGGAGAATAGAATGGACCAAC AGAGTGTAATGCTGCTCTTGAGTTTGCAGTAACTACTCTTGAGGTAGGTACTTATTTATAAAGCTGTTATCATACTTAGA TTGATAGTGTGTTAGGATCAGCTTCTCTTTCCTCGGAATCAATTCTGTCACACAGAAGATACTCACATAAGTTTCTCTCT AGAATTGGTTATGATTATAGAATCAATTGTGGCAGAACTTCCAAACATGGGCTGTGCAGAACTAAATTCAAAAAGACATT GGTTTCTTAGTAAGTTCCCAAGTAAAAGCATTAGCCAAAAATTTCAGAAAATGCAAATGAATGTCTAGCAAGAGAATTTT ATTGAGGATATGATATTGCATATCCCTTTGTTGTAAGAGAAATGGATGGGAAAAACCAGGAAAATAGAGAAGTGTCAAGT AACCACTTATCCCAAAAGCTTTATCTGACATGGTATCAGAGCCTCTATGACCGAAAGGTCTAGAGTTCGATCCTTGCTTC CCTCACTTTCTAATTAAAAAGTGGAATTTAATTAAGCACATGGTAGGTGGGTCTGTGCATTTATCCACGCTTCAAGCCTA AAGGGCTCTTGCGTGAGGGGGCGTGTTAGAATATAATATAAAACCATTAAAGTGACCCTTACCCAACAGCTTAAGCTTTT GGGATTAAGTGGTTACTTAACAAGAAGTTGCTACTTGCTAGTTGCTAGAGACTATTGCAATTATTATCTGTTTTCTCTGC ACTTGTTTGTAAGCCAACTACATCAATCATATTTAAAATGGTTTTTGAATTTTTCAGGTTGAGAACATATTAGTCATTGG TCATAGTAGCTGTGCTGGAATTGAAAATCTGATGAGGATGCAAGAAGATGTAGAATCAAGGTATTTAACTACTACAGCTA AAATATTTTATGTCACAATTAAAATGCCTCTAGTTCTCATTTTTCATCCTTCAGAAACTTCATATTCAAGTGGCTTGCCA ATGGAAAGGTTGCCAAATTGAAGACAAATGCTGCCACAGCTCATCTTACCTTTGATCAGCAGTGCAGATTCTGTGAGAAG GTATTCGTCATATTTCATTATTCCTTACCAAATTATGTGAAGTTGCCACTTGGAACTCTTACATGTTACAAACACCAGTG TGCATGTTTGGTTTTCTGTTGGAGATTCTCAAAAGTATAGTTTTGGCTTATGTTTTTGGACGATATCAATGCAAATCCAA ACATCCTACCTAGCGTTTTTGGATACATTTCTCTCATCAGAATCAATTTTGGAACCCAGATGTTACTCATAGAAGCTTGG CTTCAGAATCAATTATTTAAGGGTTTCCAAATGTGCACTAAGAACTTAACCAATCAAATGTTACTAAACTAGTTCTGTGC CACTTACAAGTTAATGGTAGTAAATCTTATCAATTTGGAATGCTGTTAAGTGTTGTTCATTTGATTTGTTGCAGGAATCT ATTAACCAATCATTATTGAACTTGCTAAGTTATCCTTGGATACAAGATAGAGTGAGTAAAAAGCTGCTTTCTCTTCATGG AGGGTATTATGATTTCTCCAATTGCTCGTTTGAAAAATGGACCCTTGATTTTGAAGAATGCAATGTTAGAGAAGAAGGGC CAGAATATGCTGTCAAAGAACAAGAATTCTGGTGCTGACCCATAGGCCTGAAACCTTCCATTAATTGGGCTAAGGTTAAT TGAGGGTGTATAAGTGTATAACACAATAAACTCGCCCTGTAAATGAATTAAAGGAATGATTTATGATTCTCATGATTGTG ATATATAATTTGGAAACATGGCTTATTTAAAATGTTTTTTTTAAATGACTTATTTAAAATGTTGTTGTGCATTAAATTGG ATAAAATGTATTGAAATAACTTGAGCTTTTGGAATATCCTCTCAAAGTATAAGCAACTTCTCGGATATGAGTTTTGTGGA TGAAAAAAACATGCAAGGAGAGCTAGTCTCATCACGATACGAATATTCGTAGTTTGAGTATGACTGTCTTTTATAGATAA AGTAGTATGAGAAGAATAATGATAGGCCCTTACGTCAGGAGTGTGCTGCTATTGATGACCCAAGGCCCAAAGTGTGGCAT GTTTATGAAAGAAGGAACAAACAAGGAAGCTTCCAGATTAAGAAGTGAGCTAGTAGAGAGAGACTAAGGGGCTAGGAGGT TTGTTACAGAGAATCAACGTGTGTGTGTGTGCATAGGAGTGCTTAAAAGGGAATTTCCGTTAGGCATAGAGGGCATGAGA GAATATTGCTTTGTCAGAGAGAATAGAGAATTATGCTTTCTCTATAGGAGCCTAGCTCTGGAGTAGTAGTGACTGTTGTA TTTCCCCATTTCCATTAATCAATTG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0137800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTGTGGCTAATTCGGTCTAGAATGAGTTCAATTCTACGATCAAATGCACCTTTAGTGGGTTCATCCTCTACAATTTT TACTTCCACGAGAACTCCCTGGTCAAAATTTATAAAAACGGACAGTTGCCATGAAGCAGCAGCAGTATCATTGCCTTCAT TGGAGGAGAACCAACCAGAGGTTCCAACTAATTGTCTCAGGCTTGATCGAGAAAACAAAGGTCTTGACATAGGGAATATG ACTGAAATTGATGGCCACCAGAATTTATTTAGCTTGATGAAACAGAGGTTTCTAAGTTTCAAGAACCAAAAATATATAAA AGAGTTGGAGCGTTTTCAAGCTCTTGCTAAAGTTCAATATCCAAAGTTTTTCGTAATTGCTTGTGCAGACTCTAGGGTAT GCCCCTCTAACATATTAGGATTCCAACCTGGAGAAGTATTCATGATTCGTAACATCGCCAATCTTGTACCTGTCATGAAG AATGGACCAACAGAGTGTAATGCTGCTCTTGAGTTTGCAGTAACTACTCTTGAGGTTGAGAACATATTAGTCATTGGTCA TAGTAGCTGTGCTGGAATTGAAAATCTGATGAGGATGCAAGAAGATGTAGAATCAAGAAACTTCATATTCAAGTGGCTTG CCAATGGAAAGGTTGCCAAATTGAAGACAAATGCTGCCACAGCTCATCTTACCTTTGATCAGCAGTGCAGATTCTGTGAG AAGGAATCTATTAACCAATCATTATTGAACTTGCTAAGTTATCCTTGGATACAAGATAGAGTGAGTAAAAAGCTGCTTTC TCTTCATGGAGGGTATTATGATTTCTCCAATTGCTCGTTTGAAAAATGGACCCTTGATTTTGAAGAATGCAATGTTAGAG AAGAAGGGCCAGAATATGCTGTCAAAGAACAAGAATTCTGGTGCTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0137800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVWLIRSRMSSILRSNAPLVGSSSTIFTSTRTPWSKFIKTDSCHEAAAVSLPSLEENQPEVPTNCLRLDRENKGLDIGNM TEIDGHQNLFSLMKQRFLSFKNQKYIKELERFQALAKVQYPKFFVIACADSRVCPSNILGFQPGEVFMIRNIANLVPVMK NGPTECNAALEFAVTTLEVENILVIGHSSCAGIENLMRMQEDVESRNFIFKWLANGKVAKLKTNAATAHLTFDQQCRFCE KESINQSLLNLLSYPWIQDRVSKKLLSLHGGYYDFSNCSFEKWTLDFEECNVREEGPEYAVKEQEFWC
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11002:SF19
1 308 308 1.2E-143 –
PANTHER
PTHR11002
1 308 308 1.2E-143 –
SignalP_GRAM_POSITIVE
SignalP-TM
1 22 22 - –
Gene3D
G3DSA:3.40.1050.10
79 294 216 4.7E-64
IPR036874
SUPERFAMILY
SSF53056
86 289 204 3.92E-53
IPR036874
CDD
cd00884
96 283 188 3.38945E-83 –
SMART
SM00947
116 284 169 4.9E-38
IPR001765
Pfam
PF00484
124 277 154 8.0E-39
IPR001765
ProSitePatterns
PS00704
128 135 8 -
IPR015892

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004089
Molecular function Carbonate dehydratase activity Catalysis of the reaction: H2CO3 = CO2 + H2O.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0015976
Biological process Carbon utilization A series of processes that forms an integrated mechanism by which a cell or an organism detects the depletion of primary carbon sources and then activates genes to scavenge the last traces of the primary carbon source and to transport and metabolize alternative carbon sources such as carbon dioxide or carbonic acid. The utilization process begins when the cell or organism detects carbon levels, includes the activation of genes whose products detect, transport or metabolize carbon-containing substances, and ends when carbon is incorporated into the cell or organism's metabolism.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0137800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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