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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0143800 |
| Transcript ID | LotjaGi1g1v0143800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger family protein; TAIR: AT1G34790.1 C2H2 and C2HC zinc fingers superfamily protein; Swiss-Prot: sp|Q8VWG3|TT1_ARATH Protein TRANSPARENT TESTA 1; TrEMBL-Plants: tr|A0A151TZS4|A0A151TZS4_CAJCA Protein TRANSPARENT TESTA 1; Found in the gene: LotjaGi1g1v0143800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:23868344..23870680) extracted from Lotus japonicus Gifu genome v1.2.
CTCTCAACTGTATTATTCCCTAGCAACCTATCACACCCTTTCTTTCAAATTTCAATCCTCCTCTTTTCCAACTTCTATTA GCTGCCAATTCATCTTCTGCAACTCCAGCTACCGTCCTTATTATCCTTCCAAATTTTGATAAAATCTAACTCTCACTGCA TTGCCCTTATAACTCTTGCACTAAGAAAAATGGCAAAGAAGAAAAAATTACAAATGGACCCTGCCTAAGATATATATTAT ATATGTAGCTATTATACCCTGCCTCATTCACATGCAAACCCTGTCAAATTTTTCATTATTCTTTACCTTAACAATATGAA TCATCAGAACCAGCTTCAGCCTCTGCCTCTGCTTAGCAGCTTCCTAGGTTCAGCTTCTTCACAAGATGATGATAATTTGC TACTGAACCAACAAAATCATGATTCATGTTATGGTCAAGCTCATGAGGATGTCACAGTGGCATTACACATTGGTCTTCCT GACAATTCTTCCAACAACAACCATAGATTTGAGATTAATGCTGCTCCAATCCCCCAAGTTCCTAACAATTACTGGATTCC CACTGAAGAACAGATCCTCACTGGGTTCAGCCATTTCTCTTGTCCTGTTTGCCTCAAAGTTTTCAACCGTTACAACAACC TTCAGGTGCTGTCTTCATAAATTCTTAGCTAATGTTTCATTCATCAGCTAGCATATGTGGTGGTATGTGCGCACTTAGCT AGAAAAATCCCTAAAACAAGCTTTTCACGTTCAAATTCAATTTTTGAGATTTTGCATGATCCACAGTTTCAACAATCTCA ACTTAGTGAAATACTTTCTCTCCAACTATTGTCCAAGTTTTTATTCTGTATGTAGTGACAGTGTTATGGTCATCAATCAA CTATATATCCTAAAATTAATAATTTTTATATTATGTTTAATGTTACTCTCACACATGACACAGGAGTTCATTCAAGTTTT TTGGTCTAACTGGACCATTTTTTTCTAAGAAAGTCCCAAACGATGTTACTACTTCCCAATATATATATATATATATATAT ATATATATATATATTTGTCTGCAGTAGAATTAGAACCCATGGTACTTGAAGCTGAATCAATTTGTCTATTTAACCACTAT TATTTCACTAAATATACATTGTTTGCAGCATAATAAGAACTTGTATACTTGAAGTTGAATGAATTCCTCTTCTTAATTCC TCGAACATATCAGTGATGCTTAGGATGAAGGGCATACCTTTTTAAAAAATTATGATATTAGGGTTTTTCATAGTTTTCAC TTTTCAATTTATAGACGTGTATTTCATTGATGTACTTTCATTTGGGTACATCTAGTACTCAATTTTAATTTAATCATATG TTGATGCATTTTCAAAAAAAAAATTACCCATACTAAAAAATCAATGTACTCATAATAATTATGAATTTGAATCATTTGCT GCTCTTGCAAGCCGCAGAATGATAAGTGTTTTCTAAACTTTTTACAGATCAATATGAACTGTTTAGTGTAAAAATCAAAT GTCTAGAATTTGCAACTGGAAACTGCATATGATCCATGTTGAGTAGTCAATCATGTGCTTCAACTTTAATTTATGAAAAA TCATTAATTAGTAGTTGAAGAATATGAATGATTTTGGTATTATATTTATAGAGTGAAGATTGAGTTAACAACTTAACATA ACATAATGTTGGTGGCAGATGCATATGTGGGGACATGGATCACAATACCGAAGAGGACCAGACTCATTGAAAAGAACTCA TCCAAGACCCTTGCTGGACATTCCATGCTACTGCTGCTCGAGTGGATGCAAGAACAACATTGACCACCCGAGAGCCAAGC CTCTCAAGGATTTCCGAACACTTAGAACACACTACAAGAGGAAGCATGGCTCCAAGCCCTTTGCTTGCCGCAAGTGCGGC AAGCCACTCGCCGTGAAAGGCGACTGGAGAACCCATGAGAAGAACTGCGGCAAGCGCTGGCTCTGTGTCTGTGGTTCGGA TTTCAAGCACAAGAGGTCTCTTAAGGATCACATCAAAGCGTTTGGGTTTGGACATGGCCCTATGTCTTCTTCATCTGAAG GATTTTGATTAAGATCTTCTCTTAATTTGATCAGTCTTTCTAGTAAAGCTGGTAGAAATATGAGTGTGACAATTAAAAGA TAGAAATATTGTGCTTTTCATTTTTAAGTTATCTGCATTTAAATAGAGGGACAAGGAAAGGAACTGAATATTCTGTTCCG AGCTTGTACTTTATTCTGCTTCAATGTGTATTGGATTTTTTATGTTGTGTGCTTTATGACATTGCCTTCTAATCATGAAT TCTGGAATCTCAACGGG
CDS sequence (LotjaGi1g1v0143800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCATCAGAACCAGCTTCAGCCTCTGCCTCTGCTTAGCAGCTTCCTAGGTTCAGCTTCTTCACAAGATGATGATAA TTTGCTACTGAACCAACAAAATCATGATTCATGTTATGGTCAAGCTCATGAGGATGTCACAGTGGCATTACACATTGGTC TTCCTGACAATTCTTCCAACAACAACCATAGATTTGAGATTAATGCTGCTCCAATCCCCCAAGTTCCTAACAATTACTGG ATTCCCACTGAAGAACAGATCCTCACTGGGTTCAGCCATTTCTCTTGTCCTGTTTGCCTCAAAGTTTTCAACCGTTACAA CAACCTTCAGATGCATATGTGGGGACATGGATCACAATACCGAAGAGGACCAGACTCATTGAAAAGAACTCATCCAAGAC CCTTGCTGGACATTCCATGCTACTGCTGCTCGAGTGGATGCAAGAACAACATTGACCACCCGAGAGCCAAGCCTCTCAAG GATTTCCGAACACTTAGAACACACTACAAGAGGAAGCATGGCTCCAAGCCCTTTGCTTGCCGCAAGTGCGGCAAGCCACT CGCCGTGAAAGGCGACTGGAGAACCCATGAGAAGAACTGCGGCAAGCGCTGGCTCTGTGTCTGTGGTTCGGATTTCAAGC ACAAGAGGTCTCTTAAGGATCACATCAAAGCGTTTGGGTTTGGACATGGCCCTATGTCTTCTTCATCTGAAGGATTTTGA
Protein sequence (LotjaGi1g1v0143800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNHQNQLQPLPLLSSFLGSASSQDDDNLLLNQQNHDSCYGQAHEDVTVALHIGLPDNSSNNNHRFEINAAPIPQVPNNYW IPTEEQILTGFSHFSCPVCLKVFNRYNNLQMHMWGHGSQYRRGPDSLKRTHPRPLLDIPCYCCSSGCKNNIDHPRAKPLK DFRTLRTHYKRKHGSKPFACRKCGKPLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGFGHGPMSSSSEGF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 3 | 238 | 236 | 4.8E-119 | – | |
| PANTHER | 3 | 238 | 236 | 4.8E-119 | – | |
| Phobius | 7 | 17 | 11 | - | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 239 | 217 | - | – | |
| Gene3D | 82 | 128 | 47 | 7.5E-6 | – | |
| SUPERFAMILY | 86 | 116 | 31 | 2.43E-5 | ||
| ProSiteProfiles | 94 | 121 | 28 | 9.951 | ||
| Pfam | 94 | 113 | 20 | 0.0034 | ||
| ProSitePatterns | 96 | 116 | 21 | - | ||
| Gene3D | 137 | 225 | 89 | 1.8E-5 | – | |
| SUPERFAMILY | 160 | 198 | 39 | 3.57E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0143800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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