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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0143900 |
| Transcript ID | LotjaGi1g1v0143900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA binding protein, putative; TAIR: AT1G22330.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9M1S3|ARP1_ARATH Probable RNA-binding protein ARP1; TrEMBL-Plants: tr|A0A0B2QWF0|A0A0B2QWF0_GLYSO RNA-binding protein 38; Found in the gene: LotjaGi1g1v0143900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:23893009..23899144) extracted from Lotus japonicus Gifu genome v1.2.
TTTGAACAACACTTAAAATAATATGGTGAGCCAAAATCATGGTGGATGAGTGTAATTTTTCTAAACTTTACTTTTATTCA TGGTAATTTTGAATTGACCTTAATTTTTTTTTACCGTGTATTCAAACGTGCACTTAATGTGTTGTATTACAGCAGTAAAG TAATGAGAAATCTTGGGGAGAAGAACACAAGGACAAGCAGAGATTAAGTCAAAACGGAAAATTGATTGGATGGTGGGAGA GGATATTAATGCAGAGACAGAGAGGATCACACATAGAGTGAGTTACCAACTCAGCTGTCACTTGTGATTCTCATTCTACT ACTACTACAACAAAGCACAACATAACCTCCTCCTCCTTCTTCTCTGTTTGGCCAGCAAATTAGAGGAGTTTGCAGCTGTC AGATCTCTTTCTCTCTCCTCCACCACTCTTTTTTCAATTATTTTTTTCCCCTTTTCATATTTTTGTTTTAATTAACCAAC GCCTCTGTTGCAAACAACCATCAAATAATAACAACGATACCTCTTCAAGACATCATCATAAACCTTACACACCCACCACT TTTTTTTCTTCCCAAGAGACATCTTCAAATTCCACAATCCATTCTCAGAAGTGGTGTGTCAACATTGGATGGTGCTGTTA GAAAGAGCACACAAACTCAGAAGAAACCAACAAACTTTGCTTCTTTGCATTTCATATTATAAAATCAAGAAAACTGAGCG GAGGAGCCGAGCTTGAATGAGCGCGACACGCCAGGAGTAACGTTTCATGCAGTAAACAAGGACACATTTTCACTCTTTTA TGCCATGGCTTACCCACATTACCGATCACAGTTCGGAGACACCACGTTCACCAAAGTGTTTGTTGGAGGACTAGCTTGGG AGACTCCAACTGAAGAAATGCGCAGCTATTTTGAGCAGTTTGGTGACATTCTTGAAGCTGTCATTATCACTGATAAGAAC ACTGCAAAATCAAAAGGCTATGGATTCGTATGTTAATTTATCTCTCACACTCTCTAAACACTCACACACACTCCTACTTC ATTTCACTCCTTGCAGAGTGAATAATGTCTTTGAATCTTTCTGCTTATTCTTGTGTTTGATTTGATTGTTATATATTTTT ATATGCAACTGGCAGGTAACATTCCGTGATCCAGAATCAGCAAGAAGGGCTTGTGCTGATCCAAACCCAATAATAGATGG AAGAAGAGCAAATTGTAACATTGCTTCACTAGGAAGGCCTAGACCATCACCTCCAAGAGGTATACATATATATGTATAAA AAAATATACATGCTTTTTGTTTATTTGAGCTGAATCATCATTGTACAACACATATCAATAATGTGCAGTGTTTGATTCCT TTTATCAAACTTATTTACACAAGAAAAATGATGGATGGGGTAATTTTTGTTTGCAGGAAGGGGTACATTTCAAGGTGGGG TAGTGGGGACAGGGGGAGCACCACCGGGTGCGGCAGGGTCGTACGGCGGTGTTCCAGCGCCAATGCCGCCGCCACCACCA GTACTGTACCCGCCATATGGGTGAGTTTTTTTTACTTTTTGATTTTTTTCAAAATTTATTTATTGAGTTAGTTTTGTTCA TTTAGTGGGGGCATTTATTAGCCATGTCACACACAGTCAAAGGAACTGGTCCATGGTATTAATTGAGAGAACTGCATATA GAAGCACACATTGCTGTCTACATATGTCGCTTGACTGCTTCCCTCCAATTACAGTTGGTCAAGGTGTCAGCGTGAAAATC CTCACAATATCACAACAATAATATAAAAAGTACTACATGGCTAAAAGTTATCATTGTCTTTGGAAAATCATTTAAAAAAC TATGGTGAAGTGAAAATTACAGTAACACAGAAACAACTGCTTTTGCATGTGTAGAATAGAATCTGCATTTCATTCCTCTA CTTTGCTTGTTCTTAACCCCCTATTAAGCTTAATCACTTGCATTGATGTTTGCATAAGCTATCTATCAACATAATTGAGA AAAATTGAAAATATGCATTTTGAAAAATAGGGTGTTCATGTATTGGTAGTACATGCAAGCATGTTACTCTTTATAATTTT GATTCCTTAATCTGTGCTAAGGTTCTGACTAGCATTTGTCAAATCTTAAAATATAATTAAATAATGATAGAAAGATAGAA TTTTTTATTAACTAAAATTCTTCTCATCTTATTCAATTTTTTATTGACTGTGTTTGAAATCATTTTGCTAATACACAAGT TGCCCTGCAAAGATGTTGATCCAACATTCTGATATATGCATGAAGTAAAATTGCATTTTCTACATTATGATGTATTTATC ACCCTGTATTTCTACATTGTACCTTCATATATTATATTTTTGAAAAAAGAAAAAAGAGAAGGGAGGTAAATGTATGAACT AAGTTGTTGAATTATAAATATCATAAATAGGGTACATGTAGATTCAACCAATCAACCAGAAGCATTATTTTTTGCATCAT ATATTATTGATGTACATCTATCTATAGCTAGTAAGAGCAGAGGTGTTGGTTATAATGGGTACTAATTAATTATGTAATCC GTGGCAACTGCATATATATACATATTTTTATGTCTCATAGTGGTCCTGCATCAATTAGTTTTATTTATAATCTTTTACAT GATAAAATCCCTCAGCTCTATAAGTACTTTTGTATGTCATGTAGCATCAAGTCATTTTCTCACCAGCAATGTTATTTTTG TCTTGTGATCATAACTGGATAAATTGGTTGGTAAATTAACAAGTACTCCTAAAGAAAAATGAAGAACATCTAAACAAAAA CAAATGAAAATTAATACTTCTGACATCAGTAATTTTCACAGCCTCATTTACACAGTATGTAATATTCAGCTCAGTCTGTT TTTTTCTTTCAATTTCTCTTGCAAATATGTACCTTAATTTGTTCCTTTTCTCAGCTATTACCTCCCCCTTTTATATTCAA ATAAATAATTAACAGTTTTTGAAAGTTAATGATGTTTATTAGAATGTGATATATATTAATGTGATACAATTCACTCTACT CTGTTAGTTCCCACAAGACTTCATATTCTGTCTATATGTGCATGCAAAATTTTCCATCCATTGGATGTCATCTTGACCAT TCTCTTTAATCAATGCTTTATTCCTTCCATTTTCTGCTTGATGGGTAACAACCACCAAAAAGAAGGCTATCATTGAAGTG AGTTATAACAAAGTCAATCTCAGTAAAACCACTGAAATCCTTTGTTCCTATTTGATGTGTCTTTCTTGTTCCACCAATTA AAAATCACCTTTGTAAGGTTATATTTATCATATTCAAGCCTACATAACAAAAAATAATTGATGGAATAAGGAAGAACATC ACACCTAGTGGTCACATAGGATTTTGGTGAGGAACAACACATCCCATAACACAAAGAAGGCACACAATAGTACAAGCCCT CATTATACATTGATGAATTTGAGGGCCTCACTAGAACCAACACTAATGATATTAATGTGTTCTAATTTCCTCACCAGAAA ACTTTACACACATATATTAAATTGAGCAGCAGTCCCACAACAAGAGAAGCCTGCCATTTTGAGCAATTGCTTATCTAAGA AACAAATGCATTACAGCATTCAACGTATTTCCTTCCATATTTGCTGAGTAATTAAATCACTTTCATCTCTATTTGCAGCT ACCCCACCTACACTCCTGATCATTATGGGTACCACCAAGTAAGCATCTCATCTCATCTCTCTCCCATAATCAATTAAGAG CATGTCATTTTCACTGAAATAATGCCATAGGTTCATTAACTAATAATGGATGACAGTTGTTTGGATGATATTAGCTTAAT ATTGATTAATTAGTGTGTTAATTGTGTGAGCACATGCAGGCTGCAATGTATAACCCTCAGATTCATCATCAGCAACCACA ATACTATCATCAACAAATGTATGGAGCAGCATCATCTTCCACCCCATATTACTATGGCTATTCTGTGCAAGCAGCACCAA GGGGTACGTTTTCTACACCCCAGGCACATCGCATGCCAGCTGGACCCTCCTATTTATACTACCCTACTACACCAATTGAA GGTTCCTTCTCTGCTTATCGCCCAATTCAACAACAACCAGTAATAAGGCAACCCTCTCCTTCCCCTAGTGGTAATATTTT CTCTTCACTTACTTTGAATTAACTCACTGCATGTTCGGTTTAGCGTTAACAGAAGTAATTTTGAATAGAATTGATACTGT AAAAACTGAATAAGGTAAAAGTGAGTTTCAAATGACGTCATTTTTGATAGAATTGATACTACTAAAAACAATTATAGTAA AAATAAGTTGAAAATGATGTGATTTTGTTGTAGAACTTCATATAATCATATTGTGGTGATATAAAGTCATGATAAAGAAG ATTAAGAGTGCTGATGTGAATGAATAACATGAAATCAAATCAACCATATAGTTACTCTTTTATTTCTTTAATCAATATTC TTGCTGAATGTAAATTGTGAACACATGCCATTGCCAACACAGAGAGAGTGGGTGGGTAAAAAAGAGAGAGGGGTACACTC ACTACTGCACAGAGATTTATGAATTATGATGCAGTTACTGACACACAATAAAATTATAAAATATTATAATGATTTGGCTG TAACATGTGGCCATGGGGGTCCACATGGGCAACCCCAGACCCATGTGAATGAGCTGTCTCGGTTGTGCCATGAACCGTAT CATGTATGGGTGGTCAATGTGGGAGAAAGAAAAGAAAGTCATGACAGAGAGAGAGGGTCATCATGTAAAGTAACAGTGAA TGCATGTGGCTTCAGTGTAGGAAAAAATGTGGTGGTTAATTCTTTAAAGATCAGTCAAATGCTCTTCCATTCATGCATTG GCCCACATTGCATGTTTACATGTTACCACTGCACATGTAACTTAATTTATCTACCCCTCTCTGAAGTTCAGCTACAACAG TCTCTAATCCTCAGCATAAATACTATTAATACTCAGTTCAACAATATATTTTAATACTTGAGAGATTCCTAGAGCTAGCG AGAGGGAGAGTGTAAGAGATAAGAACAGAAACTAGAAACTGTATTGAATGATAGTCAATCAATTACAGAGTTTTTCTGTT ATATACTGATAAAGTACTTACATTGTTAGTAACTCAACCATAACTACTCAGTAACTAACAACTAACTAGTGTTAATCACA ACCAACTAGAGTTAACCAAAACTGTTCATGTTATCATACGAGCTCCCTCCCAATTTGGGGGATCCCACCTAAATTTCAAT TGAAAAAAAAGTTTTAAAAACATCCATGTAGAGACTATGGAGTAGTCAATAATGATCACTAGCCAATGTATAAGATTTTC CGTAATAAACATACATATGTTTTTCATAATCTTGATGTTTAAGATATGTGATTATTGTTTATTATGGTTGGTTGTTTGTG ATCAGATTCTCAGACTCAGCAGCGTACATCATCCGAGACATCAGCTGGAGTAGTTATAACTTCAGAAAGTTGAAGTACCC GAGGGGAAGAACTAATAAATATATATACCTGCTAAGTTTCAACTGTATAATCTTCAAATTAATTTCATCATATTAATTCT TGATCTTTTCCCTCATTATATCTTCATTTTTTTGGTCCACATGCCATAGTTCTTTAAGGCAATAATGGCTCTCATCACAT TACTTGTGTTCTACTTCTCCATAGCTATGGCATTCAAAAATTGGACTGATTAACTTCATGGAGATTGTCTACATTCTCAT TTCCTTGTCATCAAGGAAATTTTCATTGAAATCACTTTTACTAATTAGTTCTGTTTTCTGTTTTATGCTTTCTCCAACTA TAAGACCTTAACATGTTACATCTGCAAACTAAAAGAATCCCTAATTAAGATATTTTGTTATAACTATCAGACCCCATGCA TAGACAAGTTCAACCAATTGGCATATATGAATATTGGAATAAAACCTGATCAGTGTTTATGAACCCAAATACTCTTACAC TATAATCAGATAATGTTGAAATAAAGCAGAGTAAGGTTATTAGGGGGAGAGAATTAAGTGTGTCTCTAGAAAATTGAAAG CAACATGTATTGGCTTACTAAGAGAACAAGTCGTGTTTAGATTGAAGTTGAGATCA
CDS sequence (LotjaGi1g1v0143900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTACCCACATTACCGATCACAGTTCGGAGACACCACGTTCACCAAAGTGTTTGTTGGAGGACTAGCTTGGGAGAC TCCAACTGAAGAAATGCGCAGCTATTTTGAGCAGTTTGGTGACATTCTTGAAGCTGTCATTATCACTGATAAGAACACTG CAAAATCAAAAGGCTATGGATTCGTAACATTCCGTGATCCAGAATCAGCAAGAAGGGCTTGTGCTGATCCAAACCCAATA ATAGATGGAAGAAGAGCAAATTGTAACATTGCTTCACTAGGAAGGCCTAGACCATCACCTCCAAGAGGAAGGGGTACATT TCAAGGTGGGGTAGTGGGGACAGGGGGAGCACCACCGGGTGCGGCAGGGTCGTACGGCGGTGTTCCAGCGCCAATGCCGC CGCCACCACCAGTACTGTACCCGCCATATGGCTACCCCACCTACACTCCTGATCATTATGGGTACCACCAAGCTGCAATG TATAACCCTCAGATTCATCATCAGCAACCACAATACTATCATCAACAAATGTATGGAGCAGCATCATCTTCCACCCCATA TTACTATGGCTATTCTGTGCAAGCAGCACCAAGGGGTACGTTTTCTACACCCCAGGCACATCGCATGCCAGCTGGACCCT CCTATTTATACTACCCTACTACACCAATTGAAGGTTCCTTCTCTGCTTATCGCCCAATTCAACAACAACCAGTAATAAGG CAACCCTCTCCTTCCCCTAGTGATTCTCAGACTCAGCAGCGTACATCATCCGAGACATCAGCTGGAGTAGTTATAACTTC AGAAAGTTGA
Protein sequence (LotjaGi1g1v0143900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRSYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACADPNPI IDGRRANCNIASLGRPRPSPPRGRGTFQGGVVGTGGAPPGAAGSYGGVPAPMPPPPPVLYPPYGYPTYTPDHYGYHQAAM YNPQIHHQQPQYYHQQMYGAASSSTPYYYGYSVQAAPRGTFSTPQAHRMPAGPSYLYYPTTPIEGSFSAYRPIQQQPVIR QPSPSPSDSQTQQRTSSETSAGVVITSES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 267 | 267 | 3.2E-114 | – | |
| PANTHER | 1 | 267 | 267 | 3.2E-114 | ||
| Gene3D | 3 | 110 | 108 | 2.3E-25 | ||
| SUPERFAMILY | 9 | 119 | 111 | 8.6E-27 | ||
| CDD | 16 | 91 | 76 | 3.09928E-45 | – | |
| ProSiteProfiles | 16 | 93 | 78 | 16.654 | ||
| SMART | 17 | 89 | 73 | 5.5E-24 | ||
| Pfam | 18 | 75 | 58 | 9.4E-17 | ||
| MobiDBLite | 231 | 269 | 39 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | MRNA binding | Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. |
Expression pattern of LotjaGi1g1v0143900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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