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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0144200 |
| Transcript ID | LotjaGi1g1v0144200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat-containing protein; TAIR: AT1G78230.1 Outer arm dynein light chain 1 protein; Swiss-Prot: sp|Q54Q39|PP1R7_DICDI Protein phosphatase 1 regulatory subunit pprA; TrEMBL-Plants: tr|A0A0B2Q064|A0A0B2Q064_GLYSO Uncharacterized protein; Found in the gene: LotjaGi1g1v0144200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:23989849..23993516) extracted from Lotus japonicus Gifu genome v1.2.
GTTAATTTGTTGCTGGAGTCTGGAGAACATGCATGTTTCTGACTTCTGTGACCCTCCTAGTTAGAAACACCACGTGTTGG TTCTGCCTTGGTTTTCAATTTCATTATCGATTTCTGATTTCCAACAAAAACTACCTCCGGCTTTCTCTAGTACTTTCTGC ACCGTCAGATTATATCACAACAACTTCTAACGAAAATCTCGACAACAACCTTATTTTTTTCAACCTTAATTCCATCAACT AGTGTTGCCACAATGCACGCCTTGGTTTGCGTCTAGTTGATCCTGCGTCAGAATCACGAGGGAGACATTTGAGGTTAGCT AGATTCCTGTCACCACCTTTTGACTCTAGTAACAATTATTATAACTCATGTCTTCTGTTATGTTCAATTTTTGCTAAAGA TCACTAAATTGAATTGAATTCCTAGTACATTCATCAAAAAGTGTGTGTGTGTGTTTGTGTATAAGTTGATGTTGAATTGT TGATCTTAGGGAATTTAGGAAATTTTAACGTTGAATTTCACAATGTGATATGATTTTGCTGGTGGGGTTCTTGAATTTTT CTCTGGATGAATATTTGTGACATTTGGTTATTATCTGATTATTGTTGTTCAATTGGGTAGGTCTATCATGAGAGATAAAT TTTGGGTGGAGATTTGACTTGAGGAGGATTGGTTGCATATACAACTCTGGCCAATTCTATAGATATATCTGCTTCAATTG GAACAGGCTTTGGTCTTTTGTTTCCCAGTTTCAAGTTTTGTTCAGAAAGGATCATATCTCTTGTCTTGCGCCTTCCCATT GATTATGGCTAACATTTGATGAACTATCTGAATTAAAAAGGATATCAGAATAGGTTTCATCTTCTGAGATGGCCTTGTTA AGGTGCTTCTCAATTAAGGTAAAATTGTGTTAATTGGATATCATGTCTTAATTTATTTTGTGAGATTCTTATAATTCATT TGATTAACCTTGATTTACTTTCAATCTTGCTTGCTTCTTCAGGGGAGTGTCAAACCTGCAAAAGAGGACTTTAACACTCT ACTTGTCAAGCTACAACAAACAAGAACTTCATCAGAGACGACGCGTAATTTGGAGCCAACCACTTTTGATGTTTCAGTAC CCCATGGTATTCAAAACAATTCAAGGTGCAAAGTGAGGGTTATGAGTCTTGAGAGTGAGAGTCCAGTGAAGGCTGAAGTA GACGAAGCTTATGAAGGGGAAGATGAGCATGAGGATTCACTCTCAATCAAGAGGGAACTCTCTGATTTTGATCTCCAAGA CCAGGAAGCTGTGGCAACGAAAAAAGAGCATGATTCAATAGATAAAGAGATGAAGTATCCCAACCAAGCTAGCAATGAAT TGGAAGAGAGAAATGATAGATACAACCAAAAGAGTGTGGATATAATCCAAAGTGGACATGTTAGTGATCCTGGGATTGTC AAGGCTGATTTCGGGGCTTCTCCAAAGCTCAAGCGATTCTGCTCTAACCTAGAAAAAGGGGATTTACTGAAGAACACAAC TCTACCCTTGCCTCTTTTAAACTCAGGGTCTTTTGAGGACTTTCAGGAATTATCAGCGAATCCAATGGTTAAACTAGAAA GGTCAAAGTCTGTGATGAGTCACATAAGTGCTGATAGAGTGATGTTGAAACAACATTCTTTAAGTCAAATACTCCCTTCT GGAAGTAGAAAATTGTGGTGGAAGCTCTTCATGTGGAGCCACAGAAATATCCATAGAACTTTCTCTAGAAATTCATCACT TGTTCCTTCTAGTGCTGCTTTAAATAGTAAATGTGGGTACTCGTCGGACACCTTTGAACCTAAGCAAGGCAAGGCATTGA GACATGCGGAATCATCCGAGTCAATTACTACAGAAACCTTCAACAAAAGCAGCATTGGTAAAAATATTGATGATCAAAGG TGGAGTAGACAAATTGAAAGTTCTAGTTTTCGGGCCGGCAACCAGTGGTTTGCTTTCTCAACAGAATCAGAATTTTCCTG GGTGGATGCATGGGTGAAAGATCTTGAAATTCAGCAACCAATTCCTGAGGATGATTTGGATTATGGCAATGCCAGAAGTA TTGTCTTCCCACCTACTCCTAATGAGGGCCGATCAATGACAAGAAGCACATCTCAGCTGAATCATCTAGATGCAAATCTC TCCAGAGATATTTTGAATGCCAATAGTTTGGTCCAGTGTCTAAATCCGGCTTCATCTGTTGCTCATATATCCGATGTTGG TATAAAAGTCATCCCTGCTATTTCGCACTTGACTAATCTTCGCTCTGTCAATCTATCAAACAATTTCATAGGTAAAGCTT TCGAACAGAAATGTAGCCCTTAATTCACAATCAATTAAAATATAACTCAGTTGATTGACTTACTTCTTCATTTATCTACA GTGCACATCTCACCAGGATTTCTGCCGAAGTGTATTCATACACTTAATTTGTCAAGAAACAAGATCAGCACCCTTGAGGG CCTCAAAGAATTAACCCGGTTGCGGGTGCTTGACTTAAGTTACAACCGCATCTCAAGAATTGGTCAAGGTTAGTGTCTAT ATTAATTCATGCTCAATGGAAGTGTGCATCTTATCATGAACCAACGATCCCAAAAGCTGATGTTGTTGGGCGAGGATACA TTAACGGTTTTATATTATACTTTTATCCCGCTCACTCACGTAAGGGTCCATTGGACTCGAAAATTGAACAGTGCATAGGC CTCACCTACCTTGTGCTGAACTTTAACATTTTTATTAGATCATTCGGGTTAACAATGATCCAATTCTAGACCACTTAGTT GTAGAGGCTATGATATTATGTCATGAACCAACTATCCCAAAAACTTAAACTATTGGGTGAAGTCATACATGAATGGTTTT ATATTATGCTTTTAACACATCTCAAATTTCTTAGCCTTCATTCGTAAGTGTTTTCTACAATAAAACTATTCACTATGTGA TTTACCAGGATTGTCAAGTTGCAGACTCATCAAAGAGCTATACCTTGGGGGGAACAAGATAAGTGATATTGAGGGGTTAC ACAGGCTATTTAAGCTAACAGTTCTGGACTTGAGCTTCAACAAGATCACGGCAAAAAAAGCATTAGGCCAACTAGTGGCA AACTACAACTCACTTCAGGCCCTTAACCTGCTCGGAAATCCCATTCAAAGCAACATGAGTGATGACCAGTTAAGCAAGGC AGTGTCCAGTCTCCTTCCAAAGTTGGTGTACCTGAACAAGCAACCACTCAAGAGTCAGAGAGCACGCGAAATATTACCAG ATAATGTTGCCAAAGCTGCACTTGGGAACAACAAGCGAGACTTTAGGAGAAGATTGAGAGTTAGCCAAGGAGGACCAATT TCCAGTAGAGGGCATAGAAGTAGTGCAATTGTTGCCCAGACCAGCAGGAATCGGACAAGGAGGTGAAGCAATAATGCATA GTTGCATGTAAAAGCAACAACTCATTGGATAATTGTTCTGTTTGGTCTTTTCAATGTTTCATTTATTTATATCATTAGAG AAAACAAAGCCTTAGGTGTTAATTGTCCCTTGGTTTGTTTTATGTTTTCATGATTGAGTCTTCATTCTATGCAACTTTAC TGTGTGGAACTTGGTTTGTTCACCATGATCTTATGATTTCTATGAGCATTAAGCAAATTGATTTTTCC
CDS sequence (LotjaGi1g1v0144200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCTTGTTAAGGTGCTTCTCAATTAAGGGGAGTGTCAAACCTGCAAAAGAGGACTTTAACACTCTACTTGTCAAGCT ACAACAAACAAGAACTTCATCAGAGACGACGCGTAATTTGGAGCCAACCACTTTTGATGTTTCAGTACCCCATGGTATTC AAAACAATTCAAGGTGCAAAGTGAGGGTTATGAGTCTTGAGAGTGAGAGTCCAGTGAAGGCTGAAGTAGACGAAGCTTAT GAAGGGGAAGATGAGCATGAGGATTCACTCTCAATCAAGAGGGAACTCTCTGATTTTGATCTCCAAGACCAGGAAGCTGT GGCAACGAAAAAAGAGCATGATTCAATAGATAAAGAGATGAAGTATCCCAACCAAGCTAGCAATGAATTGGAAGAGAGAA ATGATAGATACAACCAAAAGAGTGTGGATATAATCCAAAGTGGACATGTTAGTGATCCTGGGATTGTCAAGGCTGATTTC GGGGCTTCTCCAAAGCTCAAGCGATTCTGCTCTAACCTAGAAAAAGGGGATTTACTGAAGAACACAACTCTACCCTTGCC TCTTTTAAACTCAGGGTCTTTTGAGGACTTTCAGGAATTATCAGCGAATCCAATGGTTAAACTAGAAAGGTCAAAGTCTG TGATGAGTCACATAAGTGCTGATAGAGTGATGTTGAAACAACATTCTTTAAGTCAAATACTCCCTTCTGGAAGTAGAAAA TTGTGGTGGAAGCTCTTCATGTGGAGCCACAGAAATATCCATAGAACTTTCTCTAGAAATTCATCACTTGTTCCTTCTAG TGCTGCTTTAAATAGTAAATGTGGGTACTCGTCGGACACCTTTGAACCTAAGCAAGGCAAGGCATTGAGACATGCGGAAT CATCCGAGTCAATTACTACAGAAACCTTCAACAAAAGCAGCATTGGTAAAAATATTGATGATCAAAGGTGGAGTAGACAA ATTGAAAGTTCTAGTTTTCGGGCCGGCAACCAGTGGTTTGCTTTCTCAACAGAATCAGAATTTTCCTGGGTGGATGCATG GGTGAAAGATCTTGAAATTCAGCAACCAATTCCTGAGGATGATTTGGATTATGGCAATGCCAGAAGTATTGTCTTCCCAC CTACTCCTAATGAGGGCCGATCAATGACAAGAAGCACATCTCAGCTGAATCATCTAGATGCAAATCTCTCCAGAGATATT TTGAATGCCAATAGTTTGGTCCAGTGTCTAAATCCGGCTTCATCTGTTGCTCATATATCCGATGTTGGTATAAAAGTCAT CCCTGCTATTTCGCACTTGACTAATCTTCGCTCTGTCAATCTATCAAACAATTTCATAGTGCACATCTCACCAGGATTTC TGCCGAAGTGTATTCATACACTTAATTTGTCAAGAAACAAGATCAGCACCCTTGAGGGCCTCAAAGAATTAACCCGGTTG CGGGTGCTTGACTTAAGTTACAACCGCATCTCAAGAATTGGTCAAGGATTGTCAAGTTGCAGACTCATCAAAGAGCTATA CCTTGGGGGGAACAAGATAAGTGATATTGAGGGGTTACACAGGCTATTTAAGCTAACAGTTCTGGACTTGAGCTTCAACA AGATCACGGCAAAAAAAGCATTAGGCCAACTAGTGGCAAACTACAACTCACTTCAGGCCCTTAACCTGCTCGGAAATCCC ATTCAAAGCAACATGAGTGATGACCAGTTAAGCAAGGCAGTGTCCAGTCTCCTTCCAAAGTTGGTGTACCTGAACAAGCA ACCACTCAAGAGTCAGAGAGCACGCGAAATATTACCAGATAATGTTGCCAAAGCTGCACTTGGGAACAACAAGCGAGACT TTAGGAGAAGATTGAGAGTTAGCCAAGGAGGACCAATTTCCAGTAGAGGGCATAGAAGTAGTGCAATTGTTGCCCAGACC AGCAGGAATCGGACAAGGAGGTGA
Protein sequence (LotjaGi1g1v0144200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALLRCFSIKGSVKPAKEDFNTLLVKLQQTRTSSETTRNLEPTTFDVSVPHGIQNNSRCKVRVMSLESESPVKAEVDEAY EGEDEHEDSLSIKRELSDFDLQDQEAVATKKEHDSIDKEMKYPNQASNELEERNDRYNQKSVDIIQSGHVSDPGIVKADF GASPKLKRFCSNLEKGDLLKNTTLPLPLLNSGSFEDFQELSANPMVKLERSKSVMSHISADRVMLKQHSLSQILPSGSRK LWWKLFMWSHRNIHRTFSRNSSLVPSSAALNSKCGYSSDTFEPKQGKALRHAESSESITTETFNKSSIGKNIDDQRWSRQ IESSSFRAGNQWFAFSTESEFSWVDAWVKDLEIQQPIPEDDLDYGNARSIVFPPTPNEGRSMTRSTSQLNHLDANLSRDI LNANSLVQCLNPASSVAHISDVGIKVIPAISHLTNLRSVNLSNNFIVHISPGFLPKCIHTLNLSRNKISTLEGLKELTRL RVLDLSYNRISRIGQGLSSCRLIKELYLGGNKISDIEGLHRLFKLTVLDLSFNKITAKKALGQLVANYNSLQALNLLGNP IQSNMSDDQLSKAVSSLLPKLVYLNKQPLKSQRAREILPDNVAKAALGNNKRDFRRRLRVSQGGPISSRGHRSSAIVAQT SRNRTRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 21 | 646 | 626 | 3.4E-174 | – | |
| PANTHER | 21 | 646 | 626 | 3.4E-174 | – | |
| Gene3D | 364 | 498 | 135 | 4.6E-15 | ||
| SUPERFAMILY | 423 | 588 | 166 | 5.36E-33 | – | |
| SMART | 433 | 455 | 23 | 1.7 | ||
| ProSiteProfiles | 435 | 455 | 21 | 6.834 | ||
| SMART | 455 | 476 | 22 | 140.0 | – | |
| ProSiteProfiles | 457 | 478 | 22 | 8.305 | ||
| Pfam | 459 | 547 | 89 | 7.1E-9 | – | |
| SMART | 477 | 500 | 24 | 0.0038 | ||
| SMART | 477 | 499 | 23 | 1.4 | – | |
| ProSiteProfiles | 479 | 501 | 23 | 8.02 | ||
| Gene3D | 499 | 595 | 97 | 2.6E-17 | ||
| ProSiteProfiles | 502 | 523 | 22 | 7.904 | ||
| SMART | 503 | 521 | 19 | 41.0 | – | |
| SMART | 522 | 544 | 23 | 130.0 | ||
| SMART | 522 | 543 | 22 | 150.0 | – | |
| ProSiteProfiles | 524 | 545 | 22 | 7.042 | ||
| ProSiteProfiles | 550 | 571 | 22 | 6.218 | ||
| MobiDBLite | 621 | 647 | 27 | - | – | |
| MobiDBLite | 626 | 647 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0144200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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