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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR003591
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 471 results. Now displaying 1 of 10 with 50 rows per page. This search has taken 5.602s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v3023720.1
LjKlavier leucine-rich repeat receptor-like kinase [Lotus japonicus] gi|353677868|dbj|BAL04590.1| chr1 34474974 34479067 +
2 domain predictions
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Lj3g3v3375770.1
LjHar1 hypernodulation aberrant root formation protein [Lotus japonicus] gi|24940156|emb|CAD42335.1| chr3 41520393 41525499 +
2 domain predictions
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Lj4g3v0281040.1
LjFls2 flagellin-sensing 2-like protein [Lotus japonicus] gi|355346200|gb|AER60531.1| chr4 3284600 3289068 +
2 domain predictions
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Lj0g3v0001859.1
n.a. Receptor kinase [Medicago truncatula] gi|357501751|ref|XP_003621164.1| chr0 548278 551234 +
2 domain predictions
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Lj0g3v0013569.1
n.a. PREDICTED: receptor-like protein 12-like [Glycine max] gi|356495069|ref|XP_003516403.1| chr0 5132444 5135578 -
2 domain predictions
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Lj0g3v0020169.1
n.a. PREDICTED: receptor-like protein 12-like [Cicer arietinum] gi|502147282|ref|XP_004506724.1| chr0 8075083 8078449 +
2 domain predictions
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Lj0g3v0020179.1
n.a. n.a. chr0 8075083 8089893 -
2 domain predictions
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Lj0g3v0022029.1
n.a. Kinase-like protein [Medicago truncatula] gi|357491853|ref|XP_003616214.1| chr0 8901816 8902952 +
2 domain predictions
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Lj0g3v0045329.1
n.a. PREDICTED: leucine-rich repeat receptor-like protein kinase PXL2-like [Cicer arietinum] gi|502114811|ref|XP_004495057.1| chr0 14905769 14908489 +
2 domain predictions
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Lj0g3v0055039.1
n.a. PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2-like [Cicer arietinum] gi|502097475|ref|XP_004491002.1| chr0 17639362 17641296 +
2 domain predictions
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Lj0g3v0066329.1
n.a. PREDICTED: leucine-rich repeat protein lrrA-like [Glycine max] gi|356563459|ref|XP_003549980.1| chr0 23306016 23308882 +
2 domain predictions
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Lj0g3v0075369.1
n.a. PREDICTED: probable receptor protein kinase TMK1-like [Cicer arietinum] gi|502135214|ref|XP_004502257.1| chr0 28565917 28573472 +
2 domain predictions
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Lj0g3v0090439.1
n.a. PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Cicer arietinum] gi|502148812|ref|XP_004507279.1| chr0 37254703 37257214 -
2 domain predictions
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Lj0g3v0094389.1
n.a. PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At1g50610-like [Cicer arietinum] gi|502089636|ref|XP_004488972.1| chr0 39688550 39691233 +
2 domain predictions
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Lj0g3v0100639.1
n.a. n.a. chr0 42535737 42541606 -
2 domain predictions
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Lj0g3v0100639.2
n.a. n.a. chr0 42535737 42541606 -
2 domain predictions
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Lj0g3v0114919.1
n.a. PREDICTED: receptor-like protein 12-like [Glycine max] gi|356503054|ref|XP_003520327.1| chr0 50450689 50453761 +
2 domain predictions
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Lj0g3v0134889.1
n.a. Receptor-like kinase [Medicago truncatula] gi|357493297|ref|XP_003616937.1| chr0 61907973 61912446 +
2 domain predictions
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Lj0g3v0164339.1
n.a. PREDICTED: TMV resistance protein N-like [Glycine max] gi|356497814|ref|XP_003517752.1| chr0 77834077 77837104 -
2 domain predictions
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Lj0g3v0167089.1
n.a. PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Glycine max] gi|356561456|ref|XP_003548997.1| chr0 79429669 79434308 +
2 domain predictions
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Lj0g3v0173409.1
n.a. PREDICTED: LRR receptor-like serine/threonine-protein kinase ERECTA-like [Glycine max] gi|356552384|ref|XP_003544548.1| chr0 83385336 83391158 -
2 domain predictions
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Lj0g3v0187619.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Glycine max] gi|356506579|ref|XP_003522057.1| chr0 91504417 91506133 -
2 domain predictions
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Lj0g3v0195259.1
n.a. PREDICTED: probable receptor protein kinase TMK1-like [Cicer arietinum] gi|502112140|ref|XP_004494248.1| chr0 95277361 95279611 -
2 domain predictions
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Lj0g3v0196229.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g48740-like [Glycine max] gi|356559015|ref|XP_003547797.1| chr0 95686819 95693065 -
2 domain predictions
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Lj0g3v0199339.1
n.a. PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Glycine max] gi|356561470|ref|XP_003549004.1| chr0 97688869 97692688 -
2 domain predictions
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Lj0g3v0203199.1
n.a. Receptor protein kinase-like protein [Medicago truncatula] gi|357439013|ref|XP_003589783.1| chr0 100705047 100707368 +
2 domain predictions
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Lj0g3v0205729.1
n.a. Leucine-rich repeat-containing protein [Medicago truncatula] gi|357489671|ref|XP_003615123.1| chr0 102342302 102346014 -
2 domain predictions
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Lj0g3v0207049.1
n.a. Leucine-rich repeat-containing protein [Medicago truncatula] gi|357489671|ref|XP_003615123.1| chr0 103324473 103327843 +
2 domain predictions
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Lj0g3v0217609.1
n.a. NBS resistance protein [Medicago truncatula] gi|357456371|ref|XP_003598466.1| chr0 110753999 110758886 -
2 domain predictions
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Lj0g3v0220159.1
n.a. PREDICTED: phytosulfokine receptor 2-like [Glycine max] gi|356546862|ref|XP_003541841.1| chr0 112635233 112639990 -
2 domain predictions
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Lj0g3v0220169.1
n.a. PREDICTED: phytosulfokine receptor 2-like [Glycine max] gi|356546862|ref|XP_003541841.1| chr0 112635481 112639990 -
2 domain predictions
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Lj0g3v0235289.1
n.a. TIR-NBS-LRR-TIR type disease resistance protein [Medicago truncatula] gi|357462269|ref|XP_003601416.1| chr0 121924807 121930397 -
2 domain predictions
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Lj0g3v0235289.2
n.a. TIR-NBS-LRR-TIR type disease resistance protein [Medicago truncatula] gi|357462269|ref|XP_003601416.1| chr0 121925482 121932602 -
2 domain predictions
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Lj0g3v0247179.1
n.a. PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Cicer arietinum] gi|502148812|ref|XP_004507279.1| chr0 128097658 128101088 -
2 domain predictions
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Lj0g3v0252099.1
n.a. PREDICTED: leucine-rich repeat-containing protein 40-like [Glycine max] gi|356549743|ref|XP_003543250.1| chr0 130695794 130709063 +
2 domain predictions
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Lj0g3v0252099.2
n.a. PREDICTED: leucine-rich repeat-containing protein 40-like [Glycine max] gi|356549743|ref|XP_003543250.1| chr0 130698952 130709063 +
2 domain predictions
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Lj0g3v0266899.1
n.a. PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170-like [Cicer arietinum] gi|502166974|ref|XP_004514026.1| chr0 138286275 138293398 +
2 domain predictions
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Lj0g3v0270309.1
n.a. Receptor-like kinase [Medicago truncatula] gi|357515415|ref|XP_003627996.1| chr0 140061819 140065622 -
2 domain predictions
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Lj0g3v0271049.1
n.a. Receptor protein kinase-like protein [Medicago truncatula] gi|357462393|ref|XP_003601478.1| chr0 140382825 140387367 +
2 domain predictions
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Lj0g3v0271059.1
n.a. Receptor protein kinase-like protein [Medicago truncatula] gi|357462393|ref|XP_003601478.1| chr0 140382825 140387369 +
2 domain predictions
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Lj0g3v0278349.1
n.a. probable leucine-rich repeat receptor-like protein kinase At1g35710-like precursor [Glycine max] gi|359807163|ref|NP_001241099.1| chr0 144542642 144544812 -
2 domain predictions
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Lj0g3v0282649.1
n.a. n.a. chr0 146542871 146545973 -
2 domain predictions
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Lj0g3v0291029.3
n.a. Receptor like protein 33 [Theobroma cacao] gi|508725116|gb|EOY17013.1| chr0 151083660 151090180 +
2 domain predictions
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Lj0g3v0291039.1
n.a. PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Cicer arietinum] gi|502078346|ref|XP_004485915.1| chr0 151090772 151094021 +
2 domain predictions
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Lj0g3v0297189.1
n.a. PREDICTED: receptor-like protein kinase HSL1-like [Glycine max] gi|356515144|ref|XP_003526261.1| chr0 154416084 154419775 +
2 domain predictions
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Lj0g3v0303549.1
n.a. Receptor protein kinase-like protein [Medicago truncatula] gi|357516993|ref|XP_003628785.1| chr0 158016672 158020224 -
2 domain predictions
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Lj0g3v0306109.1
n.a. Receptor-like protein kinase [Medicago truncatula] gi|357439017|ref|XP_003589785.1| chr0 159627112 159629719 -
2 domain predictions
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Lj0g3v0306119.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Glycine max] gi|356568066|ref|XP_003552234.1| chr0 159629854 159630617 -
2 domain predictions
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Lj0g3v0308459.1
n.a. PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Cicer arietinum] gi|502165747|ref|XP_004513677.1| chr0 161062734 161064162 -
2 domain predictions
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Lj0g3v0310539.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230-like [Glycine max] gi|356510976|ref|XP_003524208.1| chr0 162205293 162208324 -
2 domain predictions
 –