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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0153000 |
| Transcript ID | LotjaGi1g1v0153000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein, putative; TAIR: AT3G22650.2 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SU30|CPR30_ARATH F-box protein CPR30; TrEMBL-Plants: tr|G7LFI2|G7LFI2_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi1g1v0153000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:26612288..26619646) extracted from Lotus japonicus Gifu genome v1.2.
TGCAGGCGTAGCAACGCTCGCTGGTTACGCGCAGGTGAAGGTTTTCCGCTCATTACGACTACGATCCCTCACCGATGCAA ACTCATTCATTCTTCATCTGAATCGAGAGAAGATAAAGCTCTGGCCCCTTCAACAATGGCGATTCCTGATGATGTCGCCT TCACGATTCTGTCGAAACTGCCTCTGAAATCCCTCAAGCGATTCACACTGGTTCACAAATCATGGGCTGATTTACTCGAA ATCCCTCATTTCATGAGCAAATTCGTATCCAAACATCACTCTTATCACGATGATACATCTTTCCTTCTCTTACAGCAGCA GCCATCAGATTTCATCCATTATCACGGTTCATTGTATCTGCTTTCAGGTGACAAATTTGAGAAAACAGTCAAATCAGATT CGCTTCCATATCAAGAGCATCGCAGATTCCTTAGGGTTTCGGGTTCCGGTATTCATGGCATTCGTTGTCTCCATGAAGTA CCAGACTATAAGTATGTATTGTGGAACCCAGCTACTAATGAATTCAGAGTTACTCCTCCCAGCCCTCGAGAGTCTGTACC TTATTATGATCCATGTATTACTACTCATGGATTTGGTTATGATCATGTTACCGATGACTTTAAGGTCATTCGCCATATAA CATTTTATCCGGAATTTGAAAAAGAAGATCATAGGGAACCAGATGAGGACGAAGATGATGATTGGCAAGTTGAAGTTGAA GTTGAAAATGATCGGCAAGATGAGTCGATGATACCAGACCAGTTTCCATGTCCAACATCACAGCCCTTCTGGGAAATATA TAGCCTAAGAAGCAACTCTTGGAGGAAACTGGATACTGATATGCCTATTATCGGAAGTGGTTCCGGTATGGGTTATGACA TTTACACGAACGGAGTGTGTCATTGGTTGGGTTTGAATAAGTGTGGTTTAGAAATATATTTGGGGTCATTCAACTTTAGC AATGAGATATTCTACACAACGCCCTTACCGTTAGATCTGGCTGATACAAGGAAGCAGAACTACTTGGCAGTGTTAAATGA GTCCATTGCATTGATATCAATACATGAAGAAACAACAACTTTTCACATATGGATTTTGGGTGAGCTCTGTGCAAAGGAAT CATGGACTAAACTTTTCACTGTTGGACTTGGACCCTTGCATGGCTTTGGGCTTCCTATTGGAGTAGGGAAGATGGGCGAT ATATTCTTCAGAAAAGAAAATGGTGAACTAGCCTTGTTCGATTTAAGTACTCATATGCTCAAGGAGATTGCTGCTACAGA GGTGTTAGAGTATGATCAGATAATAATCTATAAGGAAAGCATTCTTCCGATTGGAAGAACAGGTTATTGATTGTTTTTCT AGTTCAAGCTTAAAGCTTTACTCATTAGATTAATGATGATGTCTTTTAAGATTTATTGAATGTTAAGAAGTCACTTGTAT ACAAGCTGGCTCTTCAATTGCCCACATGTTATATGCTATCAAGTAGGCTTAATTACACTTTTGTGAATAGATAGTTTTGG TTTCCCCAGTTTCAATTGAGATTGAGCCAATTAAGCCCTTATACTTTTAAAATTAATCAAATTTAGTCCAACAGTTAGTG TGTCATCAGTTATTAATGAAATTCGCTGACATGGAGAACTCTAATCTTAGCTGTCATATATATTGCCAACATTGCCACAT ATGATATTTTATTTGGTTTTATGTTTTAACCAAATTAAATAAAACATTTGAGGTGCTCGTAATTCTTTTGTCTTTATGAT AGTTGACAGAAATCGAAAAATTCTCACTTATTATGTTGAATATTCATGGAGCTCGTAATTCCAGTACAAGTTTGTTGTCA AGGATCTTGGTATGGCGGGGGGAAGATTCACATGGTATAGGAGGGAAGCAGGGAAAGTATAGTGGCTAAGAGGCTGGACA GGGCTGTGGCTGACCCGGAATGAAGGCTAGCTTTTCCCTGAGGCTTATGTTGAGCTGTTAACTAGAGTGCAATCTGATCA TAGTCCCTTACTTTTGAAGTGTTCTCTGGAAAATAAAAATCAGGGACTAAGTCCTTTCAGATTTCTTGTTGCTTGGGCCT CTCATGAGGAGTATAAGGGGATGGGGGAGAAAGCTTGGAAAGGTACATATGGTGATGTTACTTCCAAGTTTGCTAAGGTG AAGGAGGATTCTATCCATTTCAATAATCAAACATTTGCGAAGGTGAAGGAGGATTGGATGCTTTCTTCCACCATGTCCTG TCTTGAAGCTAAGTTACAAGAGGAATATTGGGAGTTACAAGAGGAATATAGTGAGGTTCTGAGGGAGGAGGAACTTTTGT GGTCTCCAAAGTCTAGGGTGGTTTCAATCTTTCAGAAGTTCCTCCCTCTTCTTGTTAATCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTATATATATATATATATATATATATATATTAGTTTGCTTCTCTCTTTCTGCTTTCTGTCTATGGGAAG TTGAGAACCTAAAACAATATTTGTGTTAGTTAAGCCATAGTTAATTATATAATAGTTAATAGGAGAGTCATTCTTTGCTT TTCAATACCTTTCTCAAGCATTCTTCTTATTCTTGCATTAATGATTAATAAAATGTGTTTAAATCCATAGAGAACACTGT CAAAGAAGGTGCAAGGAATACCTTGAGAGTAAAAAGAGAGAAAAAATAAAGTCAAAGGAGAATCGCTACCAATCTTCAAT CTCAATCCCAAAATCTGAAATATTTACTATGTATGAATGCATGTATACATTTAGTGTATATGTATTAAAAAATTCCATTT CCTTTACTTTCTCTCTACCTTCCCAAATCTACATGTGAAATTTGTATAATTGTGTTGCTTTTGTTTTGAGTAATGGATGA TGCAGGGTGTTATTAGAATCAATGAATTCATATATTTGAGTGATATAGTACAAAATGGCGATGATAGAGTTTCACAAGGT TCATTTACAATATTCTTCTAATTAGTAGTAGATGTGACCATAAATGCCTTTGACTCCTATAAAATTGGAGTTGTCTCAGA CTAAAGCTAAATAAGTTGTTTTAGTGGCCACTTTCCGGGTTTTCTTCTATCCTCGCAAATTATGATTTTCCTTTTGGCTA CTGGTTATGGGATTGAGAAGCTGGATTGTTGCACTTTTTACTATTTTGGCTATTAGAATTTGTTTTTATCCAAATGGAGT TATATTTTCTTTTGGTTGCAGTTGCTGGCGAAGGGATTGGAGAAGTCCGGGTTTCACCCGGATGCCATAGCTGATCAGGT AAGAAACTGGTTGAGGATGTCTTTATTTTTTATAATTTTTTTCTGAAATGCACTTGATGGAGGAATTTGAAATTTCTTAT CGCAAAATTATTGTTTGATTTGCAATGAAGTTTGGCAGTTAATGTCAAGAAGACCAGTCACAGTATTCAATGGGGGTTTA GAATAGAGTAATATTCTATTCTACCATCTAAAGCATTCTTTTTTAACTTTGCAACTTGGAAGACTTTGGTTAGTTACTTT AAACAAATTGCTAAAAATTTACTTCATTACTCATTGAAGATTTCACACAGTTCTAGAAACATTGAAGATAGAAAAAATTA TAGCCTATCATTTTAAAAGTTACTTAGGTTTACTGGTGAGCCATTTCAAGTCAGCTGTGTTCTAGTCGTGGATAATGAGA TTGAAAGCGTAGTTTGGCAATGCCATATCGACATGTATTGTAATATACAAACATGATTGGAAAAAAAACAAATCAGTGAT AAGTGATAACAATTTTGATACTCTGTTCACAGGTTACTGGTGTTCTACGTGCTATTACTAATTTTCATGGTGACTAGTGT TAGGAATACTGAATTACTGATTGTATAACTTTGTTATTATGCTTTCAGTTCTATTGTATTTCCTTTCAGTATTGTTAAGT CAGTTAGTGTTGTTTAGCTTGTTGTAACAAACTGTAACAAATTCAATCTGAGTTACTTATAGCTCTTGTGATTGATCATT GCAAGTTTTGTTTGTTAGCTAAACTTCTTTGCTCTCTATAAAAGAGCTATCTTTGTAATCAGAATACATTTCTCTAGACA CACTCTCCCCGATTTCTTAATGTGGTATGAAGAGCTTAATCTTGATCCTTTCCATGGCTTCCACACAAAGCACTATAGAA CAAAGTTCAATCTTTTGCTTCCTGTGTATGTGTTAGATTTGAAATATGTTCGTCACATGTGTTTTTCTTGGTTGATTTGT CTGGCTTTGTCATTTCCTTCTTACTTTTTTGTAATGTTTTAACATACTCTCTTTTTGTCATAGTCACTGATTCATTCTAC TTTTTTTTTTATTGTTGTAATTGTCAAACTCTGTTATGTGAGTTGTTTAGGTGGCTCCAACTTATGAAATTATTGTTACT CATTCAATGAACCTACCATTTTTTCCATTTTCTCTTTGCTTTTTCTCTGCCTTATTCAGCAAGTCGTTTAACTATCAGAG TGTTAATTGGCTAGGAAATAGAGGTTGAAAATTATTCAGTCCTCTGTAAAAACATAGATCAAAAGATATTCATAAATCTT TCATGGACTCTTATCCAGTATGAATTAGATTTTCCTGGATTTCTGTTTGTTATCACTAAAGAGGCCTCCCATTGGTTAGA AAGATCAAAGATGCTAGTAAAAGTCTCTTTGTGCATCAAGGTGAATACTACTTTGTTTAGATTCCTAATACTTAAGATTC ACCAATCAAGAAGTTGATATGCTCGAAGAACTAGCATGTTATGTCCAATTATGGTCAAAACACCATTGTTCAGGTAGAGT TAATACATTCTTATGTTATCATGCCTAATAACTATATTATATCATTACATGGATGATGCCCATCTAATGTGTGGAAGATG AATTTAATTTACATGGTCACATGTGCATTGATTTGTCGCCAAGCCATGCCCATCTAACGTAGTAGTTGTATAATTATGTT CATTTCCTTTTTTTCTTTCATGGTACACTACTACATTTAAGCCCTTTGCTTCATTTTTTCTTGTCACCTTTAATATCTTA TTTCCATTAACTACTTTGAATTTTGATTTTAATTTAAAATTTTATTAACATAAATGCATAATCTCACTCACTTTGCATCT CTTACATATAGTTAAGTCGGTGGAGTTCAATTTTTTGGTCCTTTTGTTTTGTGATTTAAGAAGCTGAAGGCGAAGATATA TCTTTTATGGAATGTCGATGCAATGGCTGTGCAAAGATTGAGCGATTAGTTAAGGTTATGAAATCTCTCTTTTACTACTA CTTTCTTATTTGCCGTAGCAGATGACTCATTCACCTTTTGCAGTATATATTGTGGATAATGTGTATAGTATCAGGGTCTT ACATGCTGACATCTTGTTCCCAAATTTTTGAAAATACAAGAGCTACACGTTCTCAGTCATGTTCTTTGAAAAGTATATGG CTCTAGTTTTAGTTTTTTATTTTGGTGGTAAATTTCCGCTAACCCATATCTTAGACCCTCTGGTCTTGATATGCCCCCAA TGGTTTACTTTTTCTTGTCTTCCCTACTGGATATGAAATCATAGTATACTGGCATAATATTCTACATCAGTCCATGTTGG AAGGACACTACTAATAAGTAATAACTGTTGCATTTTAACTTCCATGCTAAGGAGCTTTTCTTGATATATTATTGTGAACC AAATCTTTATAATTTTTTACGATACTTGGAAGAGAAGTTATCTGGTTTCCATCTTGTTGATTGCAGGAATTACCATTCTC AACTAAACTTTTGCATCTGTTTCCATGTGGTTTTCATTCTTATTCTTCAATTTACAAAATAGAGTTACGTTTTTTCATGT GTCAATGATTTTATGGTAACATTTGATGCATGTCCTGAAATTCAGGTTCTGTATACACCACAGGTGTAATTTTTGTATGA GGTTGTGTGGTGTCCCTGTCATCAGAAGCTATTAGGCTATATTAGCTAGTCCAAAGCTGGAGTCACATGGCATGCTGCAA AGTATTGATTAACATTTAATGCTTGTTGTCATGTGACTTAAAGCTTAGTTAGTTAGTTTGGTCATTGTTGTCTTCAATTA AAAATCTTTAATTGTTTGGATATTGTTTGTCTTCAGTTGAAATTTAACTAAGGAGCTGATTTGAAATGGCGAAATGTTGC TTTTCAAAAGAACTAGCTCTTATCATATGAAAATCTAGGTTTTACAGTCAAGCATCACCCTAAAGATGTGTTGGGCAAAG GCAAATATGGTTTTTATGTAGGCTAAAGATGTGACATGTATCAGTCTCACCGTTTCTTCTTTCCTCACAGGCTCGGCTCT GCTTCTCTTTTCTGCCATAGAAATTGTTCGTCTTCTACTCCATCCTCCCTCTCCAGCTTCTCTCTGTGTGCTAAACAGTG TCTCATGTAAATTTCTAGCTCTCCACTTCCTCATACTCAAGCTTCTCATTTTTTTTTATTTCATTGATCAGATGCAAAAT CTCTTTCTCTAGGTGTTAGATCTGTTTCTCTTCTCTTTTGATCAGGTAAGATTTCTTGTTCTGGGTTTCTCTATTTCTCA TCTGTGGAAATAAATTTTTTTCCTTAATTTTGGAATAAATTATGAAAATTCTATTGCTGACATTCTAATTTTTTTTTATA TAATTTTAGATAACAAACTGTTCGATGAAATGTTAGAACGATTGCTTTTGTGGTACTTTAATCACATTGTGTTCTGACGT AGTATTTTGCTTAATAGACTTTATGATTCACATTACTGCAATTTCTTTTTTGGTGAATGCTACCATACAATAGTGAAATA GGTTGTCTATGGTGCAAGAGCTAGGTCGATTGAAGTTTTAGAACAGATATTGTGGAAATATATTAAGTTTACATCTTTAA ATCTCAATTTTGTTATGTAGGTCGGAAAATCCAGGAAGTCAAAAGGGTAAGAAATGGTGCATTATGGAGGAATTTTGCTT AGCCAAGAAATTCTAGCTAAGCAAAATTTTGGTAGCAACAAATGAGTTTTGAAAGCATCTGCTTGCTAAGCGAGTAGGGA TTTTCTTCGCATGAAGTAAGATAACTATTGAGCGAGTTTTGTCTCGCTAATTAAGCAAGTTGAGTTGGCCTTGGCTTCAT TTAAAAGCTGGAAAATAGAATTTTAAGCAACTTCTTGGCACTTCTACATATCTTAATAAGTGAGAAACACCAAAGAGGCT TGGAGATTGGATCTTTGGTACAAAGGAGAGCTGGAATTATCCATAAGGAATCACAGATTGTTCGGTTCTTCTTAGTTTTC TTCATCCAAGTTTGTAAAGCTTCCATGAAAATAGAAAGTTAACTTATCGCTTTTTGTTTGGATTAAATGTAAGTACTTG
CDS sequence (LotjaGi1g1v0153000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGATTCCTGATGATGTCGCCTTCACGATTCTGTCGAAACTGCCTCTGAAATCCCTCAAGCGATTCACACTGGTTCA CAAATCATGGGCTGATTTACTCGAAATCCCTCATTTCATGAGCAAATTCGTATCCAAACATCACTCTTATCACGATGATA CATCTTTCCTTCTCTTACAGCAGCAGCCATCAGATTTCATCCATTATCACGGTTCATTGTATCTGCTTTCAGGTGACAAA TTTGAGAAAACAGTCAAATCAGATTCGCTTCCATATCAAGAGCATCGCAGATTCCTTAGGGTTTCGGGTTCCGGTATTCA TGGCATTCGTTGTCTCCATGAAGTACCAGACTATAAGTATGTATTGTGGAACCCAGCTACTAATGAATTCAGAGTTACTC CTCCCAGCCCTCGAGAGTCTGTACCTTATTATGATCCATGTATTACTACTCATGGATTTGGTTATGATCATGTTACCGAT GACTTTAAGGTCATTCGCCATATAACATTTTATCCGGAATTTGAAAAAGAAGATCATAGGGAACCAGATGAGGACGAAGA TGATGATTGGCAAGTTGAAGTTGAAGTTGAAAATGATCGGCAAGATGAGTCGATGATACCAGACCAGTTTCCATGTCCAA CATCACAGCCCTTCTGGGAAATATATAGCCTAAGAAGCAACTCTTGGAGGAAACTGGATACTGATATGCCTATTATCGGA AGTGGTTCCGGTATGGGTTATGACATTTACACGAACGGAGTGTGTCATTGGTTGGGTTTGAATAAGTGTGGTTTAGAAAT ATATTTGGGGTCATTCAACTTTAGCAATGAGATATTCTACACAACGCCCTTACCGTTAGATCTGGCTGATACAAGGAAGC AGAACTACTTGGCAGTGTTAAATGAGTCCATTGCATTGATATCAATACATGAAGAAACAACAACTTTTCACATATGGATT TTGGGTGAGCTCTGTGCAAAGGAATCATGGACTAAACTTTTCACTGTTGGACTTGGACCCTTGCATGGCTTTGGGCTTCC TATTGGAGTAGGGAAGATGGGCGATATATTCTTCAGAAAAGAAAATGGTGAACTAGCCTTGTTCGATTTAAGTACTCATA TGCTCAAGGAGATTGCTGCTACAGAGGTGTTAGAGTATGATCAGATAATAATCTATAAGGAAAGCATTCTTCCGATTGGA AGAACAGTTGCTGGCGAAGGGATTGGAGAAGTCCGGGTTTCACCCGGATGCCATAGCTGA
Protein sequence (LotjaGi1g1v0153000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIPDDVAFTILSKLPLKSLKRFTLVHKSWADLLEIPHFMSKFVSKHHSYHDDTSFLLLQQQPSDFIHYHGSLYLLSGDK FEKTVKSDSLPYQEHRRFLRVSGSGIHGIRCLHEVPDYKYVLWNPATNEFRVTPPSPRESVPYYDPCITTHGFGYDHVTD DFKVIRHITFYPEFEKEDHREPDEDEDDDWQVEVEVENDRQDESMIPDQFPCPTSQPFWEIYSLRSNSWRKLDTDMPIIG SGSGMGYDIYTNGVCHWLGLNKCGLEIYLGSFNFSNEIFYTTPLPLDLADTRKQNYLAVLNESIALISIHEETTTFHIWI LGELCAKESWTKLFTVGLGPLHGFGLPIGVGKMGDIFFRKENGELALFDLSTHMLKEIAATEVLEYDQIIIYKESILPIG RTVAGEGIGEVRVSPGCHS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 43 | 43 | 9.1 | ||
| SMART | 3 | 43 | 41 | 0.0023 | ||
| SUPERFAMILY | 3 | 70 | 68 | 2.88E-9 | ||
| Pfam | 3 | 43 | 41 | 7.4E-4 | ||
| PANTHER | 3 | 166 | 164 | 8.3E-32 | – | |
| PANTHER | 3 | 166 | 164 | 8.3E-32 | – | |
| PANTHER | 216 | 393 | 178 | 8.3E-32 | – | |
| PANTHER | 216 | 393 | 178 | 8.3E-32 | – | |
| TIGRFAM | 219 | 340 | 122 | 9.2E-17 | ||
| Pfam | 251 | 372 | 122 | 1.5E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0153000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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