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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0153500 |
| Transcript ID | LotjaGi1g1v0153500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin-fold modifier 1; TAIR: AT1G77710.1 ubiquitin-fold modifier; Swiss-Prot: sp|Q9CA23|UFM1_ARATH Ubiquitin-fold modifier 1; TrEMBL-Plants: tr|I1MAL3|I1MAL3_SOYBN Ubiquitin-fold modifier 1; Found in the gene: LotjaGi1g1v0153500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:26692936..26696900) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGAGCGGTGGAAAGGTTTCATTCAAAGTCACACTCACCTCCGATCCAAAGCTACCCTTCAAAGTGTAATTCTTTCT CATTGATTCCCCTTCCTTCATCTCATTCCTCAAAATTCTAATTCTAATTTCTCAATTTCTCGCAATTTCAGGTTCAGCGT TCCGGAGGCTGCACCTTTCACCGCCGTTCTCAAATTCGCAGCTGAAGAATTCAAAGTCCCTCCCCAAACCAGCGCCATCA TCACCAATGGTAACTGCTTTTAATCTATCGTCACTTTTTTCTTTGAAATTTTCGGTATTTACAAAGATTTGTTGTTGTTT GGGAAGATTAAGCTTTTTTTTAGGGGTTGGATTTGATTGTTGAATTTGGGATTTTAGGGTGAAATTAGATTATGAGATCT AGGTTACCAGGTTTTTTTGAGCTCTGGGTAGAGATGAACTATTTGAGAATGCTCTGTTCTAAAGAGTTTGATCATTTTTT TTGGTATCGAATCTGCATCTTCAACTCCTCTGAACCCTAAAAATAATACTTCAGTTGCAGGAATACATGTGGGGATGACA CCAATAGATTTTCCTGAATATCTTTTATTCAATGGATTGTTATAACTATCTCTTACTGATGAGTTTGTTGAAAATTACAC TCCCCTCTAAGAGATACTCAAATTACACCTTTGACTCTATTTTGAAAAACTACACTACAATCTCCCTCTGTTGAATGATA AAATGTGTAGCATTTTTAGTCCATTTTAATATAAATGAACCTTTTATAAGTACTGAACAGGTACGAGTGAGTTTCTGAGG GTCAGGGATATTGTTTCTCTGTTAGTTATCCTTGGTGCCACGAACAGCTGTTTTGAACAGCCGTACTGGTGGTTTTGGAA TTTTAGTATAGGCTTAATTGCATCTTTGGTCCCTGACATTTATAAAAGCCACGATTTTGGTCCCTCACCTAATTTAATTA CAAAAATCATCCCTCACCTAACACTCTGTGAACAAAGTTGGTCCCACCGTCAATTTTTTAACGGAAGAAGCTTATGTGGT GTTTGAAAACTTAGGTGGAAGTGCCACTGGAGAGAGGGAGGCACATGCCTCTACATCTCAGAGGAAAAAACAACAAAAAA ACTCAGAGGAATAGGACACAACCTCAATCCCAGCGTTCCAACAACTAGGCCTCCCAACAGCAAAGCTTCACTATGAGATA AAAAAAACAGCCGAGAGGAGAGGAAAAATCGATTCTGACGCCAGTGGCACTTCCACATAAGCTTTCAGACGCCACGTAAG CTTCTTCCGTTAAAAAATTGACGGTTGGACCAACGTTGTTCACGAAGTGTTAGGTGAGGGACGATTTTTGTAATTAAATT AGGTGAGGGACCAAAATCGTGGCTTTTGTAAATGTCAGGGACCAAAGTTGCAATTAAGCCTTTAGTATATGAAATTAAGT TTTGAACACCCTTTATTTTCATCTTTGGGCTTCACCCAAAATCTTTGTTTTAACTTTATGCACTTGCTCATGGTAAAATG CAATAAAATGTGAAAAATATTGATCTCTCATGGGAGGACTGTAATATTTCTATGTAGTTAATACGGCAATGTCATTTGAG CATCCGTCAAGAGAGAAGAGGGTAATTTATCGAAAAGTTTAATTCTGATTTTTTTATGAAATGCGATTTTACTCTGTGGT GTTACTGTGTATTGTTGTAGATGTTTGTGCTTTAGCTTCTGTAACTGATTTGCTTTTTTTAATTGGAGCAAATATGATCT GCTAACTTGTTTTCTAGTTTCCATATTCTAGTTGTTGACCCAGTATCTTTTTCTTTAGCTTTAATCAATTTGTTTCTTTT CCAATTTAGATAGCAGAGTCTGGACTTTTAAATCTTCTCACATGTTTGTTTTTAATATTTTGTTTAGCTTCTGATGCGCT CCCAAATATTCCTTATTGGCAATTCCTTTGTAACTCAAAAGGTTCCTCTGAGTTTGGTGCAACGAAAATTCATAGGTCTT ACATTACACTTTCTCCAAACTAGTGTTTTGGGAGTCATTGCCCCCACAAGAATATCATATTATCTTAACATTATATGTAA TGCGTAATTGCGTATTAATCACCCCCACGAAAATTTTATATGTTAGTACTCCATGTTTGTGTATGTGAGTATATATGTTG CTCCCACAACTTAAGGTTTCTAGATCTGTCATTGGTTAGGGTCCAATCATGTGGCGGTGGATTCATGCTGGAAAGTTAAA TAATAGAGAACCACATTCAATTGTAAAGAGAAACCCTTGGGGGGAGATTCTCCGTATTCTCTAATCTCTTTCTTTTGTCT CTCTTTATCAGTCAAGTTATTTCTTTCTGCTAATTCTTAACTTTTGTGTCCCTGATCTTGTTAACGAACAGTAGATTGAT ATTTTTGCTTTGTAGGGAAGTTGCTTCTCTTTAGATCTTTCATTTTGTGCTTTTTGGAACAATTTTTGGATGATTAGTTA TGAAGTTTTAAATAAAAATAAATACGGCATTTTTTAGGGTAGTTTGCCATGTATGCGATCCTTAGGTGGACCTAGATGGA GCAGAATGTTTGCATCCTCAAAGATGTCTCTTTATACCTGTATTTGTTATGGGATTGGATTTTGCTTTTGGCATCTCTCT GGTTCTACTCATGACTGCTTTAATTGAGTTTTGCTATTTTGGATAAGCAAAGAGATTGGGTAGTCTTGTTGCCCTCGAGT TTATTCACGTTCCTTATTGTATCTAGTTTCTTTGTTTTGGAGCCTCCAAAACAAAAGAAAATTGGAGGGTATCTTATTCT CCCCTATTTACTCATTCCTAGTTTTTTAATAGAAAATATTTTTCCTTTCAAAATGTGTTATTGCTTTTCATTAGTCTGTG TTGCTTCTGCAGGTGGTCATTTTTTATTTGATAGTTATAGAGAGGTCTAGCAGATTAGTGCCTGTGTATACTTTAGTGTC TAACATATTTCAGAGAGGTCTTTTTATAGTAGAACAAAAGAAAGTGCAAGTAATGTAGTACACTAGTAGTCATGGTATAA TATACTGACAAATAAATTAATATTTAAGCACCAATCATAGAATTTTGCTAATTCACTTGGGAAATAAATTGGCCCTAAAC TTCAATATCCGGGAAAAGGTTCAATTCTATAGTTGAATCTATTGGGCTCAACAGCATTTTGGAGTTAATTGGAGTGCATT GCAGAAATACTAGGGGTTTTGCGGGTGTTCTCATAACATATGGGAGATCTGTGAAGTAAACGCAAAATGTGGGGGGTGGG GGGGATAATTTACTGAATATTCTTTCTTGTTTCTGTTATAGTACCATCAAATGCTGATTTGCTGTAAGTCTTACTTATTA CTTGCTATGCTTGCAGATGGTGTTGGGATAAATCCTCAGCAGAGTGCAGGTATGTCACTGTGTATTTCTTTTGCTTGCTG TATTTGATTTTCTTTATATTTCACATAGTTCCATATCTTTTGGTTTTTGGTACACTGCAATTGCCATCATTATTCATTCC ATATATATAACTTGAAGCTGGTGTTGTAAAATTCATCAATCTTTGTGTTCTAATCGGGTGTACTGTGACAAATTTTCTTC TGAAGAACTCTTTGTAAAATAATTCTTTCTCAAACCAAAACTAAAAGGCATGTTGCTTACACATACTTTTTCTTGCTGAT TTGCTTAAATGTCAGGGACTGGTTCAACATTATGACATTAGTTTTTGCTCTATTCATAAAATGGCTATGTTGTTCAGAAT TGCAATTCATGTATTCCTATTGAAGCAATACATCATGACAGTGAATCTAATGTATTAATAGACTTGCTCTTATTGTTGTT ATCTTTGAATTGACATGCTGCACTGTGCCACTTCTTCAGGAAATGTTTTCCTCAAGCATGGTTCAGAACTTCGCCTGATT CCGCGTGATAGGGTTGGTGCATCCCAGATGGTACGGGATGTCTGA
CDS sequence (LotjaGi1g1v0153500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAGCGGTGGAAAGGTTTCATTCAAAGTCACACTCACCTCCGATCCAAAGCTACCCTTCAAAGTGTTCAGCGTTCC GGAGGCTGCACCTTTCACCGCCGTTCTCAAATTCGCAGCTGAAGAATTCAAAGTCCCTCCCCAAACCAGCGCCATCATCA CCAATGATGGTGTTGGGATAAATCCTCAGCAGAGTGCAGGAAATGTTTTCCTCAAGCATGGTTCAGAACTTCGCCTGATT CCGCGTGATAGGGTTGGTGCATCCCAGATGGTACGGGATGTCTGA
Protein sequence (LotjaGi1g1v0153500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLI PRDRVGASQMVRDV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 87 | 87 | 6.8E-49 | – | |
| PANTHER | 1 | 91 | 91 | 8.9E-60 | – | |
| PIRSF | 1 | 88 | 88 | 1.2E-47 | ||
| PANTHER | 1 | 91 | 91 | 8.9E-60 | ||
| SUPERFAMILY | 2 | 86 | 85 | 2.89E-41 | ||
| Pfam | 6 | 80 | 75 | 5.9E-43 | ||
| CDD | 7 | 81 | 75 | 5.59158E-53 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein ufmylation | Covalent attachment of the ubiquitin-like protein UFM1 to another protein. |
Expression pattern of LotjaGi1g1v0153500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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