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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0157500 |
| Transcript ID | LotjaGi1g1v0157500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G77405.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q1PFC5|PP130_ARATH Pentatricopeptide repeat-containing protein At1g77405; TrEMBL-Plants: tr|A0A1J7HVI4|A0A1J7HVI4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0157500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:29278065..29281558) extracted from Lotus japonicus Gifu genome v1.2.
GTGCATTGTAAAACTCCTCCTCAATGATATACCAAGATAAACATAGACGTTGGTTGGTCAGACACAAACTCCACTGGCTT CGGTCTTGTAGCGAGATCTTCCACGACGGAGATGCTTGTCCCGACAACTCATCTTCAAGCTCATCGACTTGATTCCCCGA TGGTTGAAGCGTCGCGTTGGAGTATGAGGATTACGCAAGATATGCAATAGAGAACATTTTGATAGAATCTAACTCAGAAA TCGTGATCAAAGCTATGAACTCTACAAATAACCCATTAATATTGCAACAAATACTCATGATTGTTGAGTTCTTGCGCACC TTCCAAATGAATAGACAAGCCAACAATGTGGCTCACACTCTTGCTTCTATAGTTCTATACTTCTATTGCTTTTAATTTTC CTTCAAACATTTGATAGGATAACCCTCCACAATCTCTTGATGAGAGCCATTTTGTAGACTCTTCATTTGGTAGGATAACC CTCCACAATATATGGAACACTTTCCTTAAAACGTTAGATAATTGGTTGTTTGTATATTCTTGCAAAATTTACCAACACCT AAACTCCCTAGTCCCTAGCATTTTGCCATTTGTTCTCCTGAGCAGTACTCCGACGCCGTTTTGCATGAACCCTCATCACA AACACCTCGTCAACCAAGCACTCGTCGCCGTCGTCAAAGACCTCCCATTCCACGCCGCACCGTCTCCTCCGTCATGGACC ACCGACGCCGTCACGGCCGTCCTCCGCTCCATCGCCAGGTTCTCCTTCCAATCCCACCGCTCCATGGGCCGCCAGAACGG CTTCCGCCACCGCACCCCCCTCCGCCAGCGCAACCTCAACGACGAACACCGCAAGCTCCACGACGGCCTCCTCCTTCTCG GCCCGGCGGCCTACAGGGACCCCCACCGCGTCGACCTCGGGCTCCGTAAATCCCTCGAGTTCTTCCGCTGGGTCGAAGCC CACTCCGGCTTCACCCACGACGAGGTCACGTGCCGCGAAATGGCCTGCGTCCTCGTCCGCGCCAACGCCACCAAAACCCT CTGGGGTTTTCTCAAAGAAACCGCCAACAAACACCACAACAACCACCGTAACAACCCCATCACCACCGCGACCATCACCT GTTTGATAAAACTCCTAGGTGAACAAGGGTTGGCCAGTGAAGCCTCACTCACATTTTACAGAATGAAACAGTATCATTGC AGACCCGACATTCGCGCTTACAACACTTTAATCTACGCGCTCTGCAGGGTTGGGAATTTCGCGAGAGCGAAGTTTTTACT AGAGCAAATGGAGCTTCCCGGGTTCTGGTGCCCGCCGGATGCGTTTACTTACACGATTTTGATTAGTTCTTATTGCAGGC ACGGCATTTTAACAGGCTGCCGGAAGGCTACGCGGAGGAGGCTCTATGAAGCCGGCCGCCTCTTCCGGCTCATGCTGTTC AAAGGCTTTGTTCCTGATGTTGTTACTTACAATGCCTTGATTGATGGCTGCTGCAAGACGTATCGTATCCAGAGAGCTCT TGAGTTGTTTGAGGATATGAAGAAAAAGGGGTGTGCCCCGAACCGGGTTACTTATGATTCTTTGATTAGGTATTATAGTG CTACCAATGAGATTGACAGGGCTGTTGAGGTTTTAAGGGATATGCAGAGGTTGAATCATGGGATTCCTAGTTCTAGTTCT TACACGCCAATCATTCACGCGCTTTGTGAAGCTGGAAGGGTTGCTGAGGCTTGGAGTTTTCTTGTTGAGTTAGTTGATGG CGGCAATGTACCTCGAGAATATACTTATAGGTTGGTTTGTGATAAGCTTTGCTTGGCCGGAGAGGATGGCTTGTTGGGCG ATGAAGTGCATGAGAGGATAAAGAATGGCATGAGGAAGAGGTACAAGCAAACGATGATGGTTAAACCGGTTATGACTCGC AAGGGTTATCCTGAGATTGAGCCAGTTTGAATTCTTGGAAGAACGGTTTGTGCTCAATGAATCATGATGCTCATTTGTTG AGTTTGAACTTCAGTGAAGTGAGGCTGGTGGGCATGATTATCAGTGTATTATTTTCTTCTGGTGATGATTATTCAACACA ATGCTTTATATCGAGCACCCAAGTTGTTTATTAATACAATTGAATAAACACCCGACTGTTTGTGTTCTTAATCATCCCTG TGGAGATGGAACAAGTTTGAGTTCTTTCAACAGATTAAAGTGCTCAATATTGAATTGCCTTTGGATTTGAGCGTGCAACT AGTGAAGTGAGGGTGCAGGGTATGATTGTCGGTTTATTTATTTTCTTCAGGTGATGATCATTCATTGTTTGAACCAGATT TAGTGGGGGATCTTGATTCTTCAGAGACTAGAAAACACTGATGGGTTATAGATATAATAACCTTGTATTGGCTTCTCACC CATTGTTTCTTAATTAAATTGAAGAAAGTAGGTGACTGTTTGTATCCTTAATTTTGTATTTGTAAAATATGATGAGGGAG TATCAAATGTGGGTTGTTCTAATAAACTCCCCATGTCTCCAAATTATATTTTTCAAAGTTAAGTAACAATCACGAATAAA GACCTGATTTATTTGGTTTTCTCATAAAATTTTCAGGCATTCCACATTCTCCACTCCTGGTTCAGGAAGCTGCCACTGAT TTTCATTCTCCAATGTCTGTAGTTTTACACATTGCTAATGCAGCAGAGTACACATTTTGATGCTGCTGTTCAAAGTATAT GTCTGAGTCTGACCTCCTTGGGCAGCAAGCATCTGCATAATGAAGTGACCAGTTCAAAACTGGTATAGGCTAAATGGAGA AATGAGAAATAAAAACTCATAAGATCACATCTGTAACTGGCTGGGTGCTTACACTTCATAGTTCATTCATAGTTCAAATT GACTGTTGGGCTAATTTTTCACAATTAATCAGGTTTTTCTACAGCAAGTTTTCGAAGAAGGTTTTGACAGCTCTATGATT TGCAATTATTTGGTCCATCTAGAATGTACGCAATGACAATGTTAATTTATGTATATAACTTATTCTAGAATGTATTAAGG TTTTAGCTTGGTATGTAGACTTTAAGAGTTTAGTTTCTCTTTTGTTTGGTTACTAGGTCAGGAACCTCTTGAGCACTGAG ACTCTTAATACTAGACAATTGCGGTCATGACAAGATAGCACCAAAGCATCAATTTGGGAAAATTCTATTGAATCTTTTAG GAATTTAGAATCCCAGAGCTGAACCTCTTTTGTGGAGGAATTTTTCGTAACTTCTTTTCCTTAACCTCATCCATGGCAGT TTTTGCCTTTCCATTGCCATCATCTTTTTGAATCTCTAGACTCTTCCTTTTCTTCTTTGGTATGACTGGCTTTGGAATCG TAGAAAAACCCACACCGCTCTCTATAATGTTAGCAATGGGTTGATCTCAGAACTAAGCCCTAAATTGTGGATGTAGGCAA CTAGGCACACCAAGTCCATCATTCACTTCGTTGATTGTGTGGTCAGATGGTTTC
CDS sequence (LotjaGi1g1v0157500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACCCTCATCACAAACACCTCGTCAACCAAGCACTCGTCGCCGTCGTCAAAGACCTCCCATTCCACGCCGCACCGTC TCCTCCGTCATGGACCACCGACGCCGTCACGGCCGTCCTCCGCTCCATCGCCAGGTTCTCCTTCCAATCCCACCGCTCCA TGGGCCGCCAGAACGGCTTCCGCCACCGCACCCCCCTCCGCCAGCGCAACCTCAACGACGAACACCGCAAGCTCCACGAC GGCCTCCTCCTTCTCGGCCCGGCGGCCTACAGGGACCCCCACCGCGTCGACCTCGGGCTCCGTAAATCCCTCGAGTTCTT CCGCTGGGTCGAAGCCCACTCCGGCTTCACCCACGACGAGGTCACGTGCCGCGAAATGGCCTGCGTCCTCGTCCGCGCCA ACGCCACCAAAACCCTCTGGGGTTTTCTCAAAGAAACCGCCAACAAACACCACAACAACCACCGTAACAACCCCATCACC ACCGCGACCATCACCTGTTTGATAAAACTCCTAGGTGAACAAGGGTTGGCCAGTGAAGCCTCACTCACATTTTACAGAAT GAAACAGTATCATTGCAGACCCGACATTCGCGCTTACAACACTTTAATCTACGCGCTCTGCAGGGTTGGGAATTTCGCGA GAGCGAAGTTTTTACTAGAGCAAATGGAGCTTCCCGGGTTCTGGTGCCCGCCGGATGCGTTTACTTACACGATTTTGATT AGTTCTTATTGCAGGCACGGCATTTTAACAGGCTGCCGGAAGGCTACGCGGAGGAGGCTCTATGAAGCCGGCCGCCTCTT CCGGCTCATGCTGTTCAAAGGCTTTGTTCCTGATGTTGTTACTTACAATGCCTTGATTGATGGCTGCTGCAAGACGTATC GTATCCAGAGAGCTCTTGAGTTGTTTGAGGATATGAAGAAAAAGGGGTGTGCCCCGAACCGGGTTACTTATGATTCTTTG ATTAGGTATTATAGTGCTACCAATGAGATTGACAGGGCTGTTGAGGTTTTAAGGGATATGCAGAGGTTGAATCATGGGAT TCCTAGTTCTAGTTCTTACACGCCAATCATTCACGCGCTTTGTGAAGCTGGAAGGGTTGCTGAGGCTTGGAGTTTTCTTG TTGAGTTAGTTGATGGCGGCAATGTACCTCGAGAATATACTTATAGGTTGGTTTGTGATAAGCTTTGCTTGGCCGGAGAG GATGGCTTGTTGGGCGATGAAGTGCATGAGAGGATAAAGAATGGCATGAGGAAGAGGTACAAGCAAACGATGATGGTTAA ACCGGTTATGACTCGCAAGGGTTATCCTGAGATTGAGCCAGTTTGA
Protein sequence (LotjaGi1g1v0157500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNPHHKHLVNQALVAVVKDLPFHAAPSPPSWTTDAVTAVLRSIARFSFQSHRSMGRQNGFRHRTPLRQRNLNDEHRKLHD GLLLLGPAAYRDPHRVDLGLRKSLEFFRWVEAHSGFTHDEVTCREMACVLVRANATKTLWGFLKETANKHHNNHRNNPIT TATITCLIKLLGEQGLASEASLTFYRMKQYHCRPDIRAYNTLIYALCRVGNFARAKFLLEQMELPGFWCPPDAFTYTILI SSYCRHGILTGCRKATRRRLYEAGRLFRLMLFKGFVPDVVTYNALIDGCCKTYRIQRALELFEDMKKKGCAPNRVTYDSL IRYYSATNEIDRAVEVLRDMQRLNHGIPSSSSYTPIIHALCEAGRVAEAWSFLVELVDGGNVPREYTYRLVCDKLCLAGE DGLLGDEVHERIKNGMRKRYKQTMMVKPVMTRKGYPEIEPV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 96 | 224 | 129 | 1.7E-20 | ||
| PANTHER | 115 | 252 | 138 | 1.5E-49 | – | |
| ProSiteProfiles | 160 | 194 | 35 | 8.079 | ||
| TIGRFAM | 163 | 196 | 34 | 0.0025 | ||
| Pfam | 165 | 191 | 27 | 1.3 | ||
| Pfam | 194 | 245 | 52 | 9.2E-11 | ||
| ProSiteProfiles | 195 | 229 | 35 | 9.887 | ||
| TIGRFAM | 198 | 223 | 26 | 7.8E-5 | ||
| Gene3D | 225 | 343 | 119 | 2.4E-30 | ||
| ProSiteProfiles | 232 | 267 | 36 | 7.574 | ||
| PANTHER | 259 | 401 | 143 | 1.5E-49 | – | |
| Pfam | 277 | 322 | 46 | 4.9E-18 | ||
| ProSiteProfiles | 278 | 312 | 35 | 14.655 | ||
| TIGRFAM | 280 | 313 | 34 | 1.3E-11 | ||
| ProSiteProfiles | 313 | 347 | 35 | 9.427 | ||
| TIGRFAM | 315 | 344 | 30 | 1.2E-4 | ||
| Gene3D | 344 | 410 | 67 | 2.0E-7 | ||
| ProSiteProfiles | 349 | 383 | 35 | 10.446 | ||
| Pfam | 352 | 379 | 28 | 0.037 | ||
| TIGRFAM | 352 | 383 | 32 | 1.0E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0157500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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