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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0158500 |
| Transcript ID | LotjaGi1g1v0158500.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | V-type proton ATPase proteolipid subunit; TAIR: AT1G75630.1 vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4; Swiss-Prot: sp|P59229|VATL4_ARATH V-type proton ATPase subunit c4; TrEMBL-Plants: tr|A0A078I7D8|A0A078I7D8_BRANA V-type proton ATPase proteolipid subunit; Found in the gene: LotjaGi1g1v0158500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:29395827..29400582) extracted from Lotus japonicus Gifu genome v1.2.
GGGACATTTTGGTCAAATCACCTCTCACTCACATTAGCCACCTGTCTCACCCTGTCTCCGTCACTATTTTTCTGATCTGA TCTCTGCAAAAACCAATCGATCAAATCTTCCTCAACACGCTCCTTCATTCACTTTCCTTCATCAAACACTCTCCGCTTAG CGACGGAAACAACAACCATGGCAGGCTTCAGCGGCGACGAAACTGCTCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCA CTCGTCTTCTCCTGTCAGTTCCCCTCTCCCTTCTCGTTTTCTAGATTCTATATCAATTTTCAATAAGATCCTGCAAATCG CTTGAATTTTTAGGGTTTCTGTTTGGTGATGATTATTGGTGATGATGAACAGGTATGGGAGCTGCATATGGAACTGCGAA GAGTGGAGTGGGAGTGGCATCGATGGGAGTGATGAGACCTGAGCTTGTCATGAAATCGATTGTGCCTGTGGTTATGGCTG GTGTGCTTGGAATTTATGGGTTGATTATTGCTGTGATTATCAGTACTGGAATTAACCCTAAGGCTAAGTCTTACTATCTC TTTGATGGATATGCTCACTTGTCTTCTGGTCTTGCTTGTGGCCTTGCTGGTCTCTCTGCTGGTATGGCCATTGGAATTGT TGGTGATGCTGGAGTCAGGTATTTTTTTCCTACTCTGTTTGTATCTTACTTTCATTTTACTTGCTTGTTGTGATTTACAT GATTATTGAAGTAAGACTACTAAATGTGTGTTTGGATTAATTTAATATGACAAAATTGATTCTGACATAATTGAGTATTG TAAACGTGATTTATGTTTGGATACACTTATAAGAAAATTGATTTCCTTTAGAGAATTTTGTTTGGATGGCTTTTATTAGA ATTGATGTTAGGTGTGAAATGACCAAAATGGTTGAGTATTATAATCAATATACACATGCTTACACCAATTGAAAAGCATT TAAGTAAAAACATATCAAAAACTGATTTCACTTTTTGAGAAATGATTTTACTCACTTAATAAGCTACCCCTAGGTGTGTT CTCTATAATTGATTTTGAGCTCATGATTGATTATGATAGAAAGTATCCAAACATGTGAAAAACAATTCTCCACCATATTT TTTGCTTCAAAATCAATATGTGGTTGCCCCCCCGCACTCCCAAAAGCAAGATTTTTAGTTCCTATGAAATTATTAATATT TGTCTTTAGTCATGATTTTAATAGCAGTTCATCGCTAAATTGCTCTATTTTTGGTTCATTAATGTTTTTGGAATACTCTT ACCTTAGTTTTTGGCGTGTGCTTTTTTTCATTTTGAATTTTAGTGCAACCTGAATATGTTGTACAATTGTAATGGACATG AGTGGTACCAAAAATGTGCTGTTACCTCGTTTTTTTTGTGTAGGTTTCACTGTTTTATTAACAACAATTACCTAAGTGAA ATTTAAAGAAAAACTATTTAGAGAAAAGACTAAAATGGGGTGTTTTCTGGTTTAGTATCAGATATTGACAATATTACTGG ACTAAAAACATACTTTACATATTAAAGTATAAGTAATTACTCAATAAAAAGCAAGCATGTAGACAACATGGAGTGCAACA TTAAGCCATATTGGTGTCTGAAACAATTTCAAGTAATAAACTATGTTTTAAAGTCAAAAGTTTCTAGTTATTTGCCATTA TTATCTAAAGGGTAATCTAAATTATCATATTGGTCCTATTCGTATATGTTTGATTCATGTGATTATATTATTTGGTCCTC TTTTTATTCAAATTCAATTGTTAGCCCCAAAAAAATGCTAGCTGATGGACTCATGCAAAATGATGTGTATGACGTAATAA TACACTTAGTTCAAATCAGAGACTACATTGTGAATGAGAAACATTTTCAAGAACCAATATGCCCATTTTACTTCTGTAAA ACATAGTGTTCCCTTTTTCCCTACTAAGGTTAGATCAATGACACCTACTCTGTTATTGATTACGGACTGTGAACAATGAT TTCTGTACATGCTTACTCTGGAGCAGTCTTTTGGCAATGTGGAACTGGAAATTAGTAATTGCTATTACGGCGAAAATTTA GCTTTTGAAAATATTTGCATGGGGGAATTGCTGTGTTCAATTCTTGACAGTGTATGATATGCTGTAAGCAAAGAATCACA TATTTAAATAAGCTACTGTAAGTAGCATTGGGTCTCTTTACGCGATTATGGAGAAAAAATATACTAAACTAAACATGCAT TAATCTATTGAAATTTATTCGCGAGATACTTTCAGCTTTGTTATGCTAGTATTTCATTCTGAGAAATCTTCTGTGTGATT GTATCTCTTTCTAGTCAACAATTTATTTTTTAAGTGGCAAGGATAAGATACTATGAATCCAGGAGATGGCTAGGTTGGCT TTTGTTACATCACTTATGTGAACGTGAACGGGGGGGACCTGGTTTCCCCTTTCTAACTATTGGCATTAGAAAAGAAAAAG CAGAACGTCATGTTACCTACAGATATACTTAACTATTCGAGAATTTCATGTTGAAACTTGAGCTTTATTTCATATTCTTT GTTTAAAAGAGATATTTAATTCTTAGATTTTTGGCTGCTTTCACTCTCTGTTCCTTCATACCAATGTTAACAGTCGAAGG TTGATGTAAATAATCTCTACAAACTTATTCAGATGCTTAGAGCCTAATTGAATCTTGAGGCTGGTCCATTTGTTGCTTCT TTTATTCCCTTCAGGCTGTTGATCTATGTTATTTTGTGTTTGTATACCTTGCCATCTTGCTTTTTAACTTTCATCTTGTG TGTAAGTGTGTGGGTGCACGCTTTCTCAAATAAAATTTTCATTTCATCCATGAACTGATGCAATTTATGTTATTGTTAAT TAAGTGCTTGGAGAGTGGAGACTAAGTAAGGTGATTCCTTTGTTTCAGGGCCAATGCCCAGCAGCCGAAGCTGTTTGTTG GTATGATTCTTATCTTGATTTTTGCCGAAGCTCTTGCTCTGTATGGTCTCATTGTGGGTATCATCCTCTCATCCCGAGCT GGCCAATCTCGTGCTGAGTAAAATGAAGCCAAATCAGTGATAGCTGGGTAGTACGTTATAATTTTACTATCTGTCTTGCA TTTGAAATCAGAATACTTGACTTTGGTATATTACTATTAATTCATTTATTTTCGCAGACAAGTCCTGTATCTCTAAACTC TGTTAGTTTCATGGATTATTCATTTTGGTTGGCTGATTAATGATATTATACTTGTTTGTTGAAACATGTTTGCACGATCA TAGGATATTTCGTTAATCTCATCATTATTTAACATAAGGGAGATATTGGTGAGAAATAAGAGCTGGCCTGGCACTTCGAA AGAATGAGAATTAAAACTTAGTGAACTTGTAGGTTGGAAATTTTATGTAATATTTAACTTTTACTAGAAACCACCATTGC CTTTTTTAGGTTTTGTTGGGGACGAGTTGGATAATAACCATGAGAAACTAAGCTGGTTAAAATGAAAATATAATAAACTC CTAGGAAACAGCATTGCTAATAAGTCATTGAAGTTGCCTCAACAGCAGTTACTGATGTGCATCCAGGAGCTGCAGTGAGC GACACAACCAAGCGACCAGCCAAGAAAGTCTGATGCATAGATAGAGGAAAGCTAAAAAGGGAAAATATCCTTGGTTTGGC GCATGAGCCTGGTGATCTGGGGGCTGCACAGGTTAAGCCAGGGCCTTCGGTTAGCGCCTGGGCGACAGGGCCTGCTATTT GGCTGAGCAGGTGTTGCTTTTTGGAGCGCAAGTTTAATAGTTTTGTTATTTGGGTTTGTTTTGTTATTTGTGAGTCTGGC CTGTTTGGGCCAGTTTTAATTGGTTAGCAGGGTTGGAATAGTAAAAATAAGAGTATTCTCATTAGTTTAAGATTTATGTT TGAGTATTAGAGTTTGTAAAGGGATTCCCCCTTGTAAAGGGTTTCACCCTTGAAGAAGGTTTCCTTCTTGTTAATCCACA AGGATTGTTTTTCATATCTTCCCCTCTTCTCTTCTATTATTGTTGTTGGGTTATAGAACATAATGTACAGAAAGTAAGAG AAGCAAGATAAGTAATAAATGTGATATAAGATGTGATGGGGAAGAGAGAGATGGAGAGAACAATGGAGTGTATGTGGTAT GGTGGTGTTACTGTTTGGATGTTAAAAATCATGAGTCCTGGAACAATTGGTGATTCTACTACGGACTTGCCATAACCAAG TTGAACAGCCTGTCCACACTACCAAGCACTCAGGAGGCTCTCCTTCAATCTAGACGGTTTCTCCGACTCTTAAGTCGCTG CTATTAACATGACCAATACCTAAGGAACTTAATCTTTTGAGGAGTCTCGAAACACCTCACATAGGGCCGCAACTCGACAC ATCCCCACATTGTAATCCCCAAGAGCAGCCTTAATATTATCATGTCCAGCTAATAAAACCTTGCAAATATGGTACATGAC CTCAGAGCACTAGCACCAGTTTTAAGTTGAACAAACTAGGACGTAATGACCATTAGATTGTAGGAATTTTATTAGTTCCT CTTTAGTTGAAAAGGGCCTTCATGTTATCTTTGGAGTAGGGGCATAGAGAGGCATGATCCAGCTTGAACTTCTTTGGCAA GTGTGAGATATATTTGATCGGCACCAAGTATAGGCCACTAGTGTCCAAAGAAAATAGTAGAGAGGACCGAGATCCTTCAA GGAAAATATGACCTTAAGTTGTTTGATGAAGACTGG
CDS sequence (LotjaGi1g1v0158500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGGCTTCAGCGGCGACGAAACTGCTCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCACTCGTCTTCTCCTGTAT GGGAGCTGCATATGGAACTGCGAAGAGTGGAGTGGGAGTGGCATCGATGGGAGTGATGAGACCTGAGCTTGTCATGAAAT CGATTGTGCCTGTGGTTATGGCTGGTGTGCTTGGAATTTATGGGTTGATTATTGCTGTGATTATCAGTACTGGAATTAAC CCTAAGGCTAAGTCTTACTATCTCTTTGATGGATATGCTCACTTGTCTTCTGGTCTTGCTTGTGGCCTTGCTGGTCTCTC TGCTGGTATGGCCATTGGAATTGTTGGTGATGCTGGAGTCAGGGCCAATGCCCAGCAGCCGAAGCTGTTTGTTGGTATGA TTCTTATCTTGATTTTTGCCGAAGCTCTTGCTCTGTATGGTCTCATTGTGGGTATCATCCTCTCATCCCGAGCTGGCCAA TCTCGTGCTGAGTAA
Protein sequence (LotjaGi1g1v0158500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGIN PKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQ SRAE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 2 | 164 | 163 | 5.9E-105 | – | |
| PANTHER | 2 | 164 | 163 | 5.9E-105 | – | |
| Gene3D | 10 | 161 | 152 | 3.3E-60 | – | |
| TIGRFAM | 12 | 120 | 109 | 7.2E-52 | ||
| TMHMM | 12 | 34 | 23 | - | – | |
| SUPERFAMILY | 12 | 76 | 65 | 2.35E-6 | ||
| CDD | 12 | 79 | 68 | 5.96009E-31 | – | |
| Phobius | 12 | 34 | 23 | - | – | |
| Pfam | 16 | 75 | 60 | 6.0E-14 | ||
| PRINTS | 29 | 53 | 25 | 8.4E-59 | ||
| Phobius | 35 | 54 | 20 | - | – | |
| TMHMM | 54 | 76 | 23 | - | – | |
| PRINTS | 55 | 79 | 25 | 8.4E-59 | ||
| Phobius | 55 | 75 | 21 | - | – | |
| Phobius | 76 | 94 | 19 | - | – | |
| SUPERFAMILY | 86 | 155 | 70 | 1.12E-19 | ||
| CDD | 88 | 155 | 68 | 1.18236E-30 | – | |
| TMHMM | 93 | 115 | 23 | - | – | |
| Phobius | 95 | 117 | 23 | - | – | |
| Pfam | 96 | 154 | 59 | 3.1E-20 | ||
| PRINTS | 106 | 132 | 27 | 8.4E-59 | ||
| Phobius | 118 | 128 | 11 | - | – | |
| Phobius | 129 | 154 | 26 | - | – | |
| TMHMM | 130 | 152 | 23 | - | – | |
| PRINTS | 133 | 156 | 24 | 8.4E-59 | ||
| Phobius | 155 | 164 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Proton transmembrane transporter activity | Enables the transfer of a proton from one side of a membrane to the other. | ||
| Cellular component | Proton-transporting two-sector ATPase complex, proton-transporting domain | A protein complex that forms part of a proton-transporting two-sector ATPase complex and carries out proton transport across a membrane. The proton-transporting domain (F0, V0, or A0) includes integral and peripheral membrane proteins. | ||
| Cellular component | Proton-transporting V-type ATPase, V0 domain | A protein complex that forms part of a proton-transporting V-type ATPase and mediates proton transport across a membrane. The V0 complex consists of at least four different subunits (a,c,d and e); six or more c subunits form a proton-binding rotor ring. | ||
| Biological process | Proton transmembrane transport | The directed movement of a proton across a membrane. |
Expression pattern of LotjaGi1g1v0158500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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