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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0158500 |
| Transcript ID | LotjaGi1g1v0158500.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | V-type proton ATPase proteolipid subunit; TAIR: AT1G19910.1 ATPase, F0/V0 complex, subunit C protein; Swiss-Prot: sp|Q43434|VATL_GOSHI V-type proton ATPase 16 kDa proteolipid subunit; TrEMBL-Plants: tr|A0A0B0PYA5|A0A0B0PYA5_GOSAR V-type proton ATPase proteolipid subunit; Found in the gene: LotjaGi1g1v0158500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:29397522..29400221) extracted from Lotus japonicus Gifu genome v1.2.
ATGATGAACAGGTATGGGAGCTGCATATGGAACTGCGAAGAGTGGAGTGGGAGTGGCATCGATGGGAGTGATGAGACCTG AGCTTGTCATGAAATCGATTGTGCCTGTGGTTATGGCTGGTGTGCTTGGAATTTATGGGTTGATTATTGCTGTGATTATC AGTACTGGAATTAACCCTAAGGCTAAGTCTTACTATCTCTTTGATGGATATGCTCACTTGTCTTCTGGTCTTGCTTGTGG CCTTGCTGGTCTCTCTGCTGGTATGGCCATTGGAATTGTTGGTGATGCTGGAGTCAGGTATTTTTTTCCTACTCTGTTTG TATCTTACTTTCATTTTACTTGCTTGTTGTGATTTACATGATTATTGAAGTAAGACTACTAAATGTGTGTTTGGATTAAT TTAATATGACAAAATTGATTCTGACATAATTGAGTATTGTAAACGTGATTTATGTTTGGATACACTTATAAGAAAATTGA TTTCCTTTAGAGAATTTTGTTTGGATGGCTTTTATTAGAATTGATGTTAGGTGTGAAATGACCAAAATGGTTGAGTATTA TAATCAATATACACATGCTTACACCAATTGAAAAGCATTTAAGTAAAAACATATCAAAAACTGATTTCACTTTTTGAGAA ATGATTTTACTCACTTAATAAGCTACCCCTAGGTGTGTTCTCTATAATTGATTTTGAGCTCATGATTGATTATGATAGAA AGTATCCAAACATGTGAAAAACAATTCTCCACCATATTTTTTGCTTCAAAATCAATATGTGGTTGCCCCCCCGCACTCCC AAAAGCAAGATTTTTAGTTCCTATGAAATTATTAATATTTGTCTTTAGTCATGATTTTAATAGCAGTTCATCGCTAAATT GCTCTATTTTTGGTTCATTAATGTTTTTGGAATACTCTTACCTTAGTTTTTGGCGTGTGCTTTTTTTCATTTTGAATTTT AGTGCAACCTGAATATGTTGTACAATTGTAATGGACATGAGTGGTACCAAAAATGTGCTGTTACCTCGTTTTTTTTGTGT AGGTTTCACTGTTTTATTAACAACAATTACCTAAGTGAAATTTAAAGAAAAACTATTTAGAGAAAAGACTAAAATGGGGT GTTTTCTGGTTTAGTATCAGATATTGACAATATTACTGGACTAAAAACATACTTTACATATTAAAGTATAAGTAATTACT CAATAAAAAGCAAGCATGTAGACAACATGGAGTGCAACATTAAGCCATATTGGTGTCTGAAACAATTTCAAGTAATAAAC TATGTTTTAAAGTCAAAAGTTTCTAGTTATTTGCCATTATTATCTAAAGGGTAATCTAAATTATCATATTGGTCCTATTC GTATATGTTTGATTCATGTGATTATATTATTTGGTCCTCTTTTTATTCAAATTCAATTGTTAGCCCCAAAAAAATGCTAG CTGATGGACTCATGCAAAATGATGTGTATGACGTAATAATACACTTAGTTCAAATCAGAGACTACATTGTGAATGAGAAA CATTTTCAAGAACCAATATGCCCATTTTACTTCTGTAAAACATAGTGTTCCCTTTTTCCCTACTAAGGTTAGATCAATGA CACCTACTCTGTTATTGATTACGGACTGTGAACAATGATTTCTGTACATGCTTACTCTGGAGCAGTCTTTTGGCAATGTG GAACTGGAAATTAGTAATTGCTATTACGGCGAAAATTTAGCTTTTGAAAATATTTGCATGGGGGAATTGCTGTGTTCAAT TCTTGACAGTGTATGATATGCTGTAAGCAAAGAATCACATATTTAAATAAGCTACTGTAAGTAGCATTGGGTCTCTTTAC GCGATTATGGAGAAAAAATATACTAAACTAAACATGCATTAATCTATTGAAATTTATTCGCGAGATACTTTCAGCTTTGT TATGCTAGTATTTCATTCTGAGAAATCTTCTGTGTGATTGTATCTCTTTCTAGTCAACAATTTATTTTTTAAGTGGCAAG GATAAGATACTATGAATCCAGGAGATGGCTAGGTTGGCTTTTGTTACATCACTTATGTGAACGTGAACGGGGGGGACCTG GTTTCCCCTTTCTAACTATTGGCATTAGAAAAGAAAAAGCAGAACGTCATGTTACCTACAGATATACTTAACTATTCGAG AATTTCATGTTGAAACTTGAGCTTTATTTCATATTCTTTGTTTAAAAGAGATATTTAATTCTTAGATTTTTGGCTGCTTT CACTCTCTGTTCCTTCATACCAATGTTAACAGTCGAAGGTTGATGTAAATAATCTCTACAAACTTATTCAGATGCTTAGA GCCTAATTGAATCTTGAGGCTGGTCCATTTGTTGCTTCTTTTATTCCCTTCAGGCTGTTGATCTATGTTATTTTGTGTTT GTATACCTTGCCATCTTGCTTTTTAACTTTCATCTTGTGTGTAAGTGTGTGGGTGCACGCTTTCTCAAATAAAATTTTCA TTTCATCCATGAACTGATGCAATTTATGTTATTGTTAATTAAGTGCTTGGAGAGTGGAGACTAAGTAAGGTGATTCCTTT GTTTCAGGGCCAATGCCCAGCAGCCGAAGCTGTTTGTTGGTATGATTCTTATCTTGATTTTTGCCGAAGCTCTTGCTCTG TATGGTCTCATTGTGGGTATCATCCTCTCATCCCGAGCTGGCCAATCTCGTGCTGAGTAA
CDS sequence (LotjaGi1g1v0158500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGCTGCATATGGAACTGCGAAGAGTGGAGTGGGAGTGGCATCGATGGGAGTGATGAGACCTGAGCTTGTCATGAA ATCGATTGTGCCTGTGGTTATGGCTGGTGTGCTTGGAATTTATGGGTTGATTATTGCTGTGATTATCAGTACTGGAATTA ACCCTAAGGCTAAGTCTTACTATCTCTTTGATGGATATGCTCACTTGTCTTCTGGTCTTGCTTGTGGCCTTGCTGGTCTC TCTGCTGGTATGGCCATTGGAATTGTTGGTGATGCTGGAGCTAGGGCCAATGCCCAGCAGCCGAAGCTGTTTGTTGGTAT GATTCTTATCTTGATTTTTGCCGAAGCTCTTGCTCTGTATGGTCTCATTGTGGGTATCATCCTCTCATCCCGAGCTGGCC AATCTCGTGCTGAGTAA
Protein sequence (LotjaGi1g1v0158500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGL SAGMAIGIVGDAGARANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 138 | 138 | 6.6E-89 | – | |
| CDD | 1 | 53 | 53 | 1.47588E-22 | – | |
| Pfam | 1 | 49 | 49 | 1.1E-10 | ||
| TIGRFAM | 1 | 93 | 93 | 1.5E-43 | ||
| Phobius | 1 | 28 | 28 | - | – | |
| PANTHER | 1 | 138 | 138 | 6.6E-89 | – | |
| Gene3D | 1 | 135 | 135 | 2.4E-53 | – | |
| PRINTS | 3 | 27 | 25 | 8.4E-59 | ||
| Phobius | 29 | 53 | 25 | - | – | |
| PRINTS | 29 | 53 | 25 | 8.4E-59 | ||
| TMHMM | 32 | 54 | 23 | - | – | |
| Phobius | 54 | 64 | 11 | - | – | |
| SUPERFAMILY | 60 | 129 | 70 | 1.44E-19 | ||
| CDD | 62 | 129 | 68 | 1.91543E-30 | – | |
| Phobius | 65 | 88 | 24 | - | – | |
| TMHMM | 67 | 89 | 23 | - | – | |
| Pfam | 70 | 128 | 59 | 3.9E-20 | ||
| PRINTS | 80 | 106 | 27 | 8.4E-59 | ||
| Phobius | 89 | 102 | 14 | - | – | |
| Phobius | 103 | 128 | 26 | - | – | |
| TMHMM | 104 | 126 | 23 | - | – | |
| PRINTS | 107 | 130 | 24 | 8.4E-59 | ||
| Phobius | 129 | 138 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Proton transmembrane transporter activity | Enables the transfer of a proton from one side of a membrane to the other. | ||
| Cellular component | Proton-transporting two-sector ATPase complex, proton-transporting domain | A protein complex that forms part of a proton-transporting two-sector ATPase complex and carries out proton transport across a membrane. The proton-transporting domain (F0, V0, or A0) includes integral and peripheral membrane proteins. | ||
| Cellular component | Proton-transporting V-type ATPase, V0 domain | A protein complex that forms part of a proton-transporting V-type ATPase and mediates proton transport across a membrane. The V0 complex consists of at least four different subunits (a,c,d and e); six or more c subunits form a proton-binding rotor ring. | ||
| Biological process | Proton transmembrane transport | The directed movement of a proton across a membrane. |
Expression pattern of LotjaGi1g1v0158500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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