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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0158500 |
| Transcript ID | LotjaGi1g1v0158500.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | V-type proton ATPase proteolipid subunit; TAIR: AT1G75630.2 vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4; Swiss-Prot: sp|O22552|VATL_VIGRR V-type proton ATPase 16 kDa proteolipid subunit; TrEMBL-Plants: tr|A0A0D3DHQ4|A0A0D3DHQ4_BRAOL V-type proton ATPase proteolipid subunit; Found in the gene: LotjaGi1g1v0158500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:29397522..29400411) extracted from Lotus japonicus Gifu genome v1.2.
ACAACCATGGCAGGCTTCAGCGGCGACGAAACTGCTCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCACTCGTCTTCTC CTGTCAGTTCCCCTCTCCCTTCTCGTTTTCTAGATTCTATATCAATTTTCAATAAGATCCTGCAAATCGCTTGAATTTTT AGGGTTTCTGTTTGGTGATGATTATTGGTGATGATGAACAGGTATGGGAGCTGCATATGGAACTGCGAAGAGTGGAGTGG GAGTGGCATCGATGGGAGTGATGAGACCTGAGCTTGTCATGAAATCGATTGTGCCTGTGGTTATGGCTGGTGTGCTTGGA ATTTATGGGTTGATTATTGCTGTGATTATCAGTACTGGAATTAACCCTAAGGCTAAGTCTTACTATCTCTTTGATGGATA TGCTCACTTGTCTTCTGGTCTTGCTTGTGGCCTTGCTGGTCTCTCTGCTGGTATGGCCATTGGAATTGTTGGTGATGCTG GAGTCAGGTATTTTTTTCCTACTCTGTTTGTATCTTACTTTCATTTTACTTGCTTGTTGTGATTTACATGATTATTGAAG TAAGACTACTAAATGTGTGTTTGGATTAATTTAATATGACAAAATTGATTCTGACATAATTGAGTATTGTAAACGTGATT TATGTTTGGATACACTTATAAGAAAATTGATTTCCTTTAGAGAATTTTGTTTGGATGGCTTTTATTAGAATTGATGTTAG GTGTGAAATGACCAAAATGGTTGAGTATTATAATCAATATACACATGCTTACACCAATTGAAAAGCATTTAAGTAAAAAC ATATCAAAAACTGATTTCACTTTTTGAGAAATGATTTTACTCACTTAATAAGCTACCCCTAGGTGTGTTCTCTATAATTG ATTTTGAGCTCATGATTGATTATGATAGAAAGTATCCAAACATGTGAAAAACAATTCTCCACCATATTTTTTGCTTCAAA ATCAATATGTGGTTGCCCCCCCGCACTCCCAAAAGCAAGATTTTTAGTTCCTATGAAATTATTAATATTTGTCTTTAGTC ATGATTTTAATAGCAGTTCATCGCTAAATTGCTCTATTTTTGGTTCATTAATGTTTTTGGAATACTCTTACCTTAGTTTT TGGCGTGTGCTTTTTTTCATTTTGAATTTTAGTGCAACCTGAATATGTTGTACAATTGTAATGGACATGAGTGGTACCAA AAATGTGCTGTTACCTCGTTTTTTTTGTGTAGGTTTCACTGTTTTATTAACAACAATTACCTAAGTGAAATTTAAAGAAA AACTATTTAGAGAAAAGACTAAAATGGGGTGTTTTCTGGTTTAGTATCAGATATTGACAATATTACTGGACTAAAAACAT ACTTTACATATTAAAGTATAAGTAATTACTCAATAAAAAGCAAGCATGTAGACAACATGGAGTGCAACATTAAGCCATAT TGGTGTCTGAAACAATTTCAAGTAATAAACTATGTTTTAAAGTCAAAAGTTTCTAGTTATTTGCCATTATTATCTAAAGG GTAATCTAAATTATCATATTGGTCCTATTCGTATATGTTTGATTCATGTGATTATATTATTTGGTCCTCTTTTTATTCAA ATTCAATTGTTAGCCCCAAAAAAATGCTAGCTGATGGACTCATGCAAAATGATGTGTATGACGTAATAATACACTTAGTT CAAATCAGAGACTACATTGTGAATGAGAAACATTTTCAAGAACCAATATGCCCATTTTACTTCTGTAAAACATAGTGTTC CCTTTTTCCCTACTAAGGTTAGATCAATGACACCTACTCTGTTATTGATTACGGACTGTGAACAATGATTTCTGTACATG CTTACTCTGGAGCAGTCTTTTGGCAATGTGGAACTGGAAATTAGTAATTGCTATTACGGCGAAAATTTAGCTTTTGAAAA TATTTGCATGGGGGAATTGCTGTGTTCAATTCTTGACAGTGTATGATATGCTGTAAGCAAAGAATCACATATTTAAATAA GCTACTGTAAGTAGCATTGGGTCTCTTTACGCGATTATGGAGAAAAAATATACTAAACTAAACATGCATTAATCTATTGA AATTTATTCGCGAGATACTTTCAGCTTTGTTATGCTAGTATTTCATTCTGAGAAATCTTCTGTGTGATTGTATCTCTTTC TAGTCAACAATTTATTTTTTAAGTGGCAAGGATAAGATACTATGAATCCAGGAGATGGCTAGGTTGGCTTTTGTTACATC ACTTATGTGAACGTGAACGGGGGGGACCTGGTTTCCCCTTTCTAACTATTGGCATTAGAAAAGAAAAAGCAGAACGTCAT GTTACCTACAGATATACTTAACTATTCGAGAATTTCATGTTGAAACTTGAGCTTTATTTCATATTCTTTGTTTAAAAGAG ATATTTAATTCTTAGATTTTTGGCTGCTTTCACTCTCTGTTCCTTCATACCAATGTTAACAGTCGAAGGTTGATGTAAAT AATCTCTACAAACTTATTCAGATGCTTAGAGCCTAATTGAATCTTGAGGCTGGTCCATTTGTTGCTTCTTTTATTCCCTT CAGGCTGTTGATCTATGTTATTTTGTGTTTGTATACCTTGCCATCTTGCTTTTTAACTTTCATCTTGTGTGTAAGTGTGT GGGTGCACGCTTTCTCAAATAAAATTTTCATTTCATCCATGAACTGATGCAATTTATGTTATTGTTAATTAAGTGCTTGG AGAGTGGAGACTAAGTAAGGTGATTCCTTTGTTTCAGGGCCAATGCCCAGCAGCCGAAGCTGTTTGTTGGTATGATTCTT ATCTTGATTTTTGCCGAAGCTCTTGCTCTGTATGGTCTCATTGTGGGTATCATCCTCTCATCCCGAGCTGGCCAATCTCG TGCTGAGTAA
CDS sequence (LotjaGi1g1v0158500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGGCTTCAGCGGCGACGAAACTGCTCCCTTCTTCGGCTTCCTCGGCGCCGCCGCCGCACTCGTCTTCTCCTGTAT GGGAGCTGCATATGGAACTGCGAAGAGTGGAGTGGGAGTGGCATCGATGGGAGTGATGAGACCTGAGCTTGTCATGAAAT CGATTGTGCCTGTGGTTATGGCTGGTGTGCTTGGAATTTATGGGTTGATTATTGCTGTGATTATCAGTACTGGAATTAAC CCTAAGGCTAAGTCTTACTATCTCTTTGATGGATATGCTCACTTGTCTTCTGGTCTTGCTTGTGGCCTTGCTGGTCTCTC TGCTGGTATGGCCATTGGAATTGTTGGTGATGCTGGAATGCTTAGAGCCTAA
Protein sequence (LotjaGi1g1v0158500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGIN PKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGMLRA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 2 | 120 | 119 | 3.6E-74 | – | |
| PANTHER | 2 | 120 | 119 | 3.6E-74 | – | |
| Gene3D | 10 | 123 | 114 | 2.5E-40 | – | |
| CDD | 12 | 79 | 68 | 1.75814E-30 | – | |
| TIGRFAM | 12 | 119 | 108 | 6.7E-52 | ||
| SUPERFAMILY | 12 | 76 | 65 | 1.11E-6 | ||
| Phobius | 12 | 34 | 23 | - | – | |
| TMHMM | 12 | 34 | 23 | - | – | |
| Pfam | 16 | 75 | 60 | 3.1E-14 | ||
| PRINTS | 29 | 53 | 25 | 3.0E-36 | ||
| Phobius | 35 | 54 | 20 | - | – | |
| TMHMM | 54 | 76 | 23 | - | – | |
| Phobius | 55 | 79 | 25 | - | – | |
| PRINTS | 55 | 79 | 25 | 3.0E-36 | ||
| Phobius | 80 | 90 | 11 | - | – | |
| SUPERFAMILY | 86 | 120 | 35 | 3.53E-5 | ||
| CDD | 88 | 119 | 32 | 5.28673E-9 | – | |
| Phobius | 91 | 115 | 25 | - | – | |
| TMHMM | 93 | 115 | 23 | - | – | |
| PRINTS | 106 | 123 | 18 | 3.0E-36 | ||
| Phobius | 116 | 123 | 8 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Proton transmembrane transporter activity | Enables the transfer of a proton from one side of a membrane to the other. | ||
| Cellular component | Proton-transporting two-sector ATPase complex, proton-transporting domain | A protein complex that forms part of a proton-transporting two-sector ATPase complex and carries out proton transport across a membrane. The proton-transporting domain (F0, V0, or A0) includes integral and peripheral membrane proteins. | ||
| Cellular component | Proton-transporting V-type ATPase, V0 domain | A protein complex that forms part of a proton-transporting V-type ATPase and mediates proton transport across a membrane. The V0 complex consists of at least four different subunits (a,c,d and e); six or more c subunits form a proton-binding rotor ring. | ||
| Biological process | Proton transmembrane transport | The directed movement of a proton across a membrane. |
Expression pattern of LotjaGi1g1v0158500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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