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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0161100 |
| Transcript ID | LotjaGi1g1v0161100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase-like superfamily protein, putative; TAIR: AT3G07840.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q40312|PGLR_MEDSA Polygalacturonase; TrEMBL-Plants: tr|I3SLB3|I3SLB3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0161100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:30059269..30061257) extracted from Lotus japonicus Gifu genome v1.2.
CGAACATACTTCAAAATCAAATTCATGAATTGAAAAGAAGTGCAAGGACATAGCGTGTTAACAAAAACAATTATAATGGA TATGAAGCTCAATATCGCGATAATTGCTTTTGTCTCATTTCTTTATGGCTTTAGTACAGCTCAATCATGGGTCCTTGAGA TATCAAAATTTGGCGGAGCACCGAATGCAGATATAACACAGGTATTATCTTATCATTGATTATATTAAGAAAAAAATTAT TTCACTTTTGGAAATGAAAAAACTTATTTCACTTTTCGCTCGAAACTTAGTTTTATCCAACTAAATTGGTGATATCACAA GCAAGTACTATATATTATTTATTTTAGTTTATAATCAAATAATTGATTCGAGTTTTACACATTCTTAAGGCTTTTACAAA TGCTTGGAAAAAAGCATGTGAGTCAACCACTTCAGCCAAAATTGTGATTCCTCATGGTACATACAAGATGGGTGCAGTAC AGGTCCAAGGTCCTTGCAAGGCCCATATTGAAGTTCAAGTTGATGGAACAATTAAAGCACCTGTAAACCCAAGGAACTTC AAAGGGGCTGGCACATGGGTGCAGTTTAGTTATATTAGCTTTTTCACCTTATCGGGTAAAGGAGTTTTTGATGGTGTTGG TGAAACTGCTTGGAAAAGAAATGATTGTTCAAAAAACAAGCATTGCACCTTGCTTCCCATGGTAAATATAGATTACTCTT GCATTTTCATTCCAAGTATGTTACACATTTATCAAACAATAATAAATCAACAATTGATCTTTTTGTCTGATGTCAACAGA ATTTTGCTTTTAATTACGTCAATAATTCAATTGTTCGTGACATTACTTCCAAAGATAGCAAAAGCTTCAATGTCAATGTT TTGGGTTGCAACAATTTTACATTTGATGGTTTCAAAATTGTTGCCCCTGCTTTGAGTCCGAACACAGATGGAATCCACGT TGGAAGATCAACTGATGTGAAGATTCTTAACACAAATATTGGTACCGGAGATGATTGCGTCTCATTAGGTGATGGAATAA AAAATGTACTTGTTCAAAATGTCAACTGCGGACCAGGTCATGGTATTAGTGTTGGTAGCCTCGGAAAGTACCCGGATGAA AAGCCTGTAGAAGGATTTTATGTAAAGAATTGCACTTTGACAAACACTGATAATGGTGTGAGGATCAAGACTTGGCCTAG CACCCCAGGAACAGCTCCTATAACCGATATGCATTTCGAAGACATTATCATGGTCAATGTAAAGAACCCTATTATCATCG ACCAAGAGTATTGTCCATGGAACCAATGCTCCAAAAAGGTATTTAATCCTAAACTTATATTTATTAATGCAAAAGTTAAC ATATATTTTCATTTTTAAAAAATAATGTTCATAGTTTAAAATTTAGTAATTTAATTGTCCATACACTAAAGTAATTTATA TGACTGATTGTTGTCCATTTGTTGGTTTCTTTAAATGAGCCAGAGTCCATCTAAAATAAAGATAAGCAAGGTTTCGTTCA AGAACATTAGGGGCACTTCAGCAACTCCGGAAGGAGTAATTCTTATTTGCAGCAGTGGTGTACCTTGTGACACTGTAGAG CTAAATGGTGTTGATCTTACTTTCAATGGAGCCCCAGCAACCGCCAAATGTGCTAATGTCAAGCCAATAGTTACTGGAAA AGCTCCTACATGTGTAGCACCGGCAGCTTAGAATGACTTTAACATGGCATAATGTGTCCAAGATTATAATATTTTCTTTA ACTTTCTATTTTCCTTTTAAGGGTATAGAACTCATCCCCATAAAACGAGGATGCTAATGATTCTAGTCCCGAAATGCGGG TTCATGTAAACAATTTTTCCAAGACTTTAATTTCTATCAGTTGACACAATAATTACAAGATGTTTTCCCTTTGTTGGATA CAATTTTTTGTTTATTCTTATTTAATTTGAAAATTTTAGAAATTATCTCTTATTAATATAATTTGTTAT
CDS sequence (LotjaGi1g1v0161100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATATGAAGCTCAATATCGCGATAATTGCTTTTGTCTCATTTCTTTATGGCTTTAGTACAGCTCAATCATGGGTCCT TGAGATATCAAAATTTGGCGGAGCACCGAATGCAGATATAACACAGGCTTTTACAAATGCTTGGAAAAAAGCATGTGAGT CAACCACTTCAGCCAAAATTGTGATTCCTCATGGTACATACAAGATGGGTGCAGTACAGGTCCAAGGTCCTTGCAAGGCC CATATTGAAGTTCAAGTTGATGGAACAATTAAAGCACCTGTAAACCCAAGGAACTTCAAAGGGGCTGGCACATGGGTGCA GTTTAGTTATATTAGCTTTTTCACCTTATCGGGTAAAGGAGTTTTTGATGGTGTTGGTGAAACTGCTTGGAAAAGAAATG ATTGTTCAAAAAACAAGCATTGCACCTTGCTTCCCATGAATTTTGCTTTTAATTACGTCAATAATTCAATTGTTCGTGAC ATTACTTCCAAAGATAGCAAAAGCTTCAATGTCAATGTTTTGGGTTGCAACAATTTTACATTTGATGGTTTCAAAATTGT TGCCCCTGCTTTGAGTCCGAACACAGATGGAATCCACGTTGGAAGATCAACTGATGTGAAGATTCTTAACACAAATATTG GTACCGGAGATGATTGCGTCTCATTAGGTGATGGAATAAAAAATGTACTTGTTCAAAATGTCAACTGCGGACCAGGTCAT GGTATTAGTGTTGGTAGCCTCGGAAAGTACCCGGATGAAAAGCCTGTAGAAGGATTTTATGTAAAGAATTGCACTTTGAC AAACACTGATAATGGTGTGAGGATCAAGACTTGGCCTAGCACCCCAGGAACAGCTCCTATAACCGATATGCATTTCGAAG ACATTATCATGGTCAATGTAAAGAACCCTATTATCATCGACCAAGAGTATTGTCCATGGAACCAATGCTCCAAAAAGAGT CCATCTAAAATAAAGATAAGCAAGGTTTCGTTCAAGAACATTAGGGGCACTTCAGCAACTCCGGAAGGAGTAATTCTTAT TTGCAGCAGTGGTGTACCTTGTGACACTGTAGAGCTAAATGGTGTTGATCTTACTTTCAATGGAGCCCCAGCAACCGCCA AATGTGCTAATGTCAAGCCAATAGTTACTGGAAAAGCTCCTACATGTGTAGCACCGGCAGCTTAG
Protein sequence (LotjaGi1g1v0161100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDMKLNIAIIAFVSFLYGFSTAQSWVLEISKFGGAPNADITQAFTNAWKKACESTTSAKIVIPHGTYKMGAVQVQGPCKA HIEVQVDGTIKAPVNPRNFKGAGTWVQFSYISFFTLSGKGVFDGVGETAWKRNDCSKNKHCTLLPMNFAFNYVNNSIVRD ITSKDSKSFNVNVLGCNNFTFDGFKIVAPALSPNTDGIHVGRSTDVKILNTNIGTGDDCVSLGDGIKNVLVQNVNCGPGH GISVGSLGKYPDEKPVEGFYVKNCTLTNTDNGVRIKTWPSTPGTAPITDMHFEDIIMVNVKNPIIIDQEYCPWNQCSKKS PSKIKISKVSFKNIRGTSATPEGVILICSSGVPCDTVELNGVDLTFNGAPATAKCANVKPIVTGKAPTCVAPAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| SUPERFAMILY | 11 | 387 | 377 | 3.3E-107 | ||
| Gene3D | 19 | 391 | 373 | 3.5E-104 | ||
| Phobius | 20 | 24 | 5 | - | – | |
| Phobius | 25 | 394 | 370 | - | – | |
| PANTHER | 27 | 375 | 349 | 4.7E-132 | – | |
| PANTHER | 27 | 375 | 349 | 4.7E-132 | – | |
| Pfam | 52 | 379 | 328 | 8.3E-99 | ||
| ProSitePatterns | 233 | 246 | 14 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0161100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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