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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0162800 |
| Transcript ID | LotjaGi1g1v0162800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetratricopeptide repeat protein; TAIR: AT1G77230.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q6DI40|TTC33_DANRE Tetratricopeptide repeat protein 33; TrEMBL-Plants: tr|V7CWV5|V7CWV5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0162800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:30607337..30612348) extracted from Lotus japonicus Gifu genome v1.2.
AACAAGCATGAAAGTCCAAAGAGGAAAAGAGAATGATGGGTGGAAGAAGAGTGAGTGAACGAGTTGGGTTGAAGAAGAGG CGGTGAAAATGAAGGTAACATGGAAGAACAACAACAAGAAGCAAAAGCAACGTTGTTTACCCACCTTGTCACACTTCACT GATCCTCCATTTGAGCATCATCATCAACAGGACCAACCCCATTCACACCCTGAACAAGAAGAACATAGCGATGGAGTGCG TGCTGCTCCCAATCCTGATCAATCCTTGGAGGAAGCAAGACAATTGGCTAAGGAGTTTCAAGCTCAAGGAGACAACCTCG CTGTGGTATGTAATATTACCATCACTTCATGGTTCTGCTTTTTTGTTTTTTTTTTTAAGGAAATTAGGGTGGGAAAACAC AAGTGAAGTGTATTTTGTAAATATTAACCAATTTGATGAGCCAAGAGCGACCCATTTTAAGATTGTCAGAAAAGTTACGA TCTTTGACATGAAAGTTGAGTGGGGTGTGTTTATATATGTTACTGATTTGAAATGCTTGTATAGCAATCAAAAGTTTTAG ACTTTAGGGAGTTGGAGTGTGAAAACTGTGTTAGTGTGTGTCTCTTTGAGATGTGAATCACTTAAGTTCAGCACTAGCTA TGAAGTTTTTTTGTGAATTCTCTTCCACGCCAATGACAATCAAAGCTACAGTATTTGGAGTTATAAGTTGTTTTGAAGTA TGAAATTTATGTCATGATCAAATCATAGGTTATGAGCCTTTTTTCATTCAGTTGTTACTTCTGACTTGTGATGTGACTCT CATATGTGTTACTAATCTGTATGGACATGGCAGTGGTGGTAGCCTGATTCGCACTAGCATGCTTTTGTATTTTGGGATGA CATGGTCAGATGGGGCAAACCATGATTTGGGGAATTTAGTTTCAAATGAAAAGGAATAATAGCATAAACGGAGTCATGCG AAGGACTGGAAGTATTTTTAGATTCTGGGTTCATCTTGACAGCTGAAATTTTGGTATTAAAGGCTTGCTAGAGCTGCTGT TACTTGCATTTTTTCTTTCTGTGATGTAATTCTTAATTGTCAAATTGACGAAACATGGCCGATATACATGTGTATATATC CAATTTAAAATTTTCTTTTTGGCTCAAACGGGACCGTTTATTTAATGAAAAGAAAATAACTCAATATGGAGTCTGTTTTA ACCTTTTAATCTTAAAATCGAAAAACAGGATGGGTGATTTTGTCACGTTCCAATTTCATTTCAATTTGACACATATGGCC TACATCTAGCTAATGTAAGTCCTGAAGCTTGTATATATGATAAATTAATTATGAATCTTTTTCCTTGAAATTTTAATTTT ATATGTATAATGGTTGTACTTGTGCCTGTGACTCTGTATGTGGATATATCATATTTATGTCCTGCAATTTTTAGAATTTG GTGTGTCCCAGAGTTGCATATTATGTCCATGTCAGTATCTCTGCTTCATAACTAAGATCACATTCTTTCTCGCAGGACGG AAAATATCGGGAAGCCCTAGGAAAATGGGAAGCTGCTCTTACATTGGCACCTGATATTCCAGTTTTGCACGAACAAAAGG CCCAAGTTTTACTAGAAATTGGAGATGCTTGGAATGCTTTAAAAGCTGCAACTCGTGCGTCCACTATATTCTTCTTGATC TTATTTATCTAATGTATTGTAAGTTAAAATTTAACAAACATAAGGAAATGAACTATTTCTAGAGGTTTAATTTGAATTTA CATCGACAAATTTAAGAAGTTCATATTTCCTTGATGAATTTAATTCTAGCAATGAAGTAGTCCTGTTTTGTGACAATTTC AAGTTATTTGTTTGGGGTTTTGCTGCTGGTGTTTGTTGTAGCATTTCAAATGTTAGTTTTTTTAATGCTATAAATAGGAT AATTAACTGTCTCTGCTTGGCAGGAGCTACTGAATTGGAGCCATCATGGGCAGAGGTATGATATTATGCGTATGGCATGT AAAATATACCATTGTGATTTTTGGCATGATTCCTTCCTGTTAATGATAATTCCATATATCATTATGTCTAAGCAAGTATA TAATTGTAGCTTACTTATAGATGAGTGCCATTTGAAACATTATCTTCAGAAGTTTGTCAACTTAGATAAGTGTTGTACTC CTGTGGACTGTCTATGTGATCTATTCCATGCATGTAATTGGGCTTCTGCATTTCAATCCTCATGTTTTCCTCTAAATTTC ATTTGAAGTTTTTTTGTAATTGTCTGCTAGCCTTTTTTGTTTGGTATATCCAAAATTTCTTGTACTATACATATTTGAGA TTCAACATCTTTTCATTTAGACTGATTCCCATCTGTTCATGTAGTAAATATGCTTAAAAGTGAAAAGAGGGATCTAATGA TGGAAAGGGGCTAACATTGCGTCAAATTAAAAACCATGTTATATGCATCCTGTGTTGAGGATAAAATTATCTAATGTGAA CATGCAAATGCTTGGTTACCATCATTCTTTTTGATGCTGGAGTGGTTTCTATTTGCTGCCCATGTTAAATTTGGTATATA GTCACTACCAATGTTTTGATACCAAATTCTTGGCAAACTTTATTAGTAGGATTTGCAAAATTGAAGTATTCTAAACTACA TAATATGTCATAGCTTAAGATTACCAATGATCATGCCTACTAGTACATGAGAAATGCTAGTTCATTTCGAAGTCTCCAAA TTGGTTTATTGATTTCAATATTGGTTATAATCCTTCCAGGCATGGGTCACACTTGGCAGAGCACAGCTGAATTTCGGTGA GCCAGATAATGCAATTGAAAGCTTTGACAGAGCGTTAGCTCTTAAGGTCAGTCTTCATGATGCTTGGTAGTTGGGTTAGA TGTTGCTCAAGTTTTCTAATCAGCATTGAGTTTAGTTACTTGGAATAGTTAGTGAAATAATTAGCCAGAGAAAGAGGGAT AAACATGCTATGAATAATGGCAAGAAAATTATAGTGATTGCTTATGTAGAAATTGGGAAGGGGAGTCATGGTCTCTCAAA TACCTGGGTGAGGGACAGAATTCTCTCTTCTGCTTGTGTTCTTATCTTTATTTTGTAGCGATTTTTAATTGCAAACAATC AACTCTGCAGGCTGTACTGGTTGATCTGGGCTTGTATATTTTAATTAGCAAAATTGAACCAGAACATCGCTGCATTTTTA TTTTGGGCTTGTGGGTTGTTGTGGCAAGTTATATTCTTGCTACCTGTGTATATGTATGCTTTCTTCTGAATCTTAAGCTG AATCACCAAAGATGCATCTTTCCATTTATTCAGTTTGATACTTGACACAGTTACTACTTTGTGCAGCCTGATTACCAGGA AGCTCGAGATGATAGGCAAACCGCATTACGCCTTGTAAAGAAGAGAAAGCAACTTCACTCGTCAGGCTTGAGTGATATTC AAAATCGTTATTCGGTTGGCGAGAAGGATGGAAGCTCATGAAAGCAGACAACAGGGGAGATTAATTACAACATTCGTAAT GTTTTATTATCTTAGTTTCGGTTGAGACATGAAACTTTTGTATGCTTTCAGCAGCTCAGTTCTCAAAAGATCGTTGAGAT GTACAGGTAGCATGATAGTTTTATGAATGTGATGAATTGTTTAATGCTGAAAGAAAAAGTAATAGGGTGTACATGTGTAT TACCTATTGTAGTATTGAGTACCCATAGATTATGATATAAGTAAGAGCTATTGTATCTTTAGTTTTATTTTATTTATCAT CATTGAAAATTGAAGAAATTGGGCTCGTGATTAAATTTTATAATCAACTATGGCAGAGATGATAGTCAAAATCTCAACAA GTTTTGTAATATTGAATTGACTTCGGAGTTCGGACTATGGCAATTTCCTTTTCCAATTTTATACCAAAGATAAATGAACA TTGCCTATTCTTTTTTCCTGTTATGTCAAATGTACACTATTTTTTACCCAAAAAAAACTGTACACTATTTAGCATTTTAG TAAAAGTCGGATCAGAAGCATCAAAATTGGAAGAAAAAAAAAGTTGGTCAGCCCCTACTGTTTTGTGCGCTAATCATGGA GCGATGAATTTATTTCATGAGTACTGGCTGTGAGGATATAGAGGTAAGTTATAGGAGAAAAATATAAAAACTAGGTTTTG TTCTCCTCCTAACTGAGTAGGCTGTTCTCAGCACTTAACTCTATTTCTCTATTTATTCTATCTTCATTTTTCGAAAAAAA AAAAAACGGAATCTTGGCAGAGAAAGGGGCAAAAAAAGGTTTGTGAGTAGTAGCCGCCCCAGCTTGTGGTTCTTTTCCTC TTTGGGGATCCCTCCTCCACTAAAGAAGGGTTTTTTTTTTCATGTAGGTGTTTCTCCCACAATAAACTGTGCGTCTGTGC TACCAACCTCTTATGCTATCACTTCCGTTGCATCTCCTTGGTCTGGGGCATTATCCCAGCCCAAACCTACTTTGGATTCA CTGATGGGAGTGGAAGATAGGGGAAAAAGAGATAAAGTATAAGATGTAAATGCCCACTAGGGTGGACAACTTTTATTTCG GTCCACCGGTGGACCACAATGAAGTGCTTGGACTCATCATAAGGAATTGGATGAGTGGAAATCCTTGAGCTGGTTGTCTG CAAAAGAGAAGGATTTTTGCAGCTCAATATTCGAATGGAAATCCTTGAGCTTGTGCTTAGTTCAGATATAAGGCTAGGTT TTTCTTGCGTTTTTTGCTGGTCTGGTATGGACTGGATTTGGAATGGCTGATGTGTGCAAATTAATTTGTAAGGGCTCTGT TTCAGATTGTGCTTCTTCCCTTGAAGCTTTTCCTCTGCTCTGATTTGTTTTATTTTCTTCCCTTACTAGTGTTTTTTACC CGTGCGTTGCACGGCGATTAAATTAATTGTAAAGATGAATCAGTAGTAATGTGTTTTAACTTAGTTTAGACTCTTTTCAA TAAGTATAAAAGATATGGAACCGAACATATGTTACAAACATGTAGATTAATG
CDS sequence (LotjaGi1g1v0162800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGTAACATGGAAGAACAACAACAAGAAGCAAAAGCAACGTTGTTTACCCACCTTGTCACACTTCACTGATCCTCC ATTTGAGCATCATCATCAACAGGACCAACCCCATTCACACCCTGAACAAGAAGAACATAGCGATGGAGTGCGTGCTGCTC CCAATCCTGATCAATCCTTGGAGGAAGCAAGACAATTGGCTAAGGAGTTTCAAGCTCAAGGAGACAACCTCGCTGTGGAC GGAAAATATCGGGAAGCCCTAGGAAAATGGGAAGCTGCTCTTACATTGGCACCTGATATTCCAGTTTTGCACGAACAAAA GGCCCAAGTTTTACTAGAAATTGGAGATGCTTGGAATGCTTTAAAAGCTGCAACTCGAGCTACTGAATTGGAGCCATCAT GGGCAGAGGCATGGGTCACACTTGGCAGAGCACAGCTGAATTTCGGTGAGCCAGATAATGCAATTGAAAGCTTTGACAGA GCGTTAGCTCTTAAGCCTGATTACCAGGAAGCTCGAGATGATAGGCAAACCGCATTACGCCTTGTAAAGAAGAGAAAGCA ACTTCACTCGTCAGGCTTGAGTGATATTCAAAATCGTTATTCGGTTGGCGAGAAGGATGGAAGCTCATGA
Protein sequence (LotjaGi1g1v0162800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKVTWKNNNKKQKQRCLPTLSHFTDPPFEHHHQQDQPHSHPEQEEHSDGVRAAPNPDQSLEEARQLAKEFQAQGDNLAVD GKYREALGKWEAALTLAPDIPVLHEQKAQVLLEIGDAWNALKAATRATELEPSWAEAWVTLGRAQLNFGEPDNAIESFDR ALALKPDYQEARDDRQTALRLVKKRKQLHSSGLSDIQNRYSVGEKDGSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 19 | 19 | - | – | |
| MobiDBLite | 1 | 62 | 62 | - | – | |
| PANTHER | 1 | 206 | 206 | 8.4E-85 | – | |
| MobiDBLite | 25 | 51 | 27 | - | – | |
| Gene3D | 56 | 204 | 149 | 5.5E-25 | ||
| SUPERFAMILY | 60 | 186 | 127 | 5.13E-24 | ||
| SMART | 67 | 100 | 34 | 43.0 | ||
| ProSiteProfiles | 67 | 168 | 102 | 22.499 | ||
| ProSiteProfiles | 67 | 100 | 34 | 7.257 | ||
| SMART | 101 | 134 | 34 | 49.0 | ||
| ProSiteProfiles | 101 | 134 | 34 | 5.812 | ||
| Pfam | 107 | 168 | 62 | 7.8E-7 | – | |
| SMART | 135 | 168 | 34 | 2.8E-5 | ||
| ProSiteProfiles | 135 | 168 | 34 | 12.803 | ||
| MobiDBLite | 190 | 209 | 20 | - | – | |
| MobiDBLite | 191 | 209 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0162800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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