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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0166100 |
| Transcript ID | LotjaGi1g1v0166100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras-related protein Rab-18; TAIR: AT1G43890.1 RAB GTPASE HOMOLOG B18; Swiss-Prot: sp|O23657|RABC1_ARATH Ras-related protein RABC1; TrEMBL-Plants: tr|A0A151U1X5|A0A151U1X5_CAJCA GTP-binding protein yptV3; Found in the gene: LotjaGi1g1v0166100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:31519947..31525264) extracted from Lotus japonicus Gifu genome v1.2.
CCATTTTGGGTTTCAATTGCACATGTGGGTCCAATCCAGGTGCCGTGCGAAGCACTGAACAACCACCGCAGCAAAACTTT ACACCCGTTTCTTTGACTCTCGGCAACCTTCTAAGTACTCCTTCTTTTCTTTCTCTTCTATTTTCATCTCTATTTCCACA TTCCAAAGAATTCAAGTCAAGTCTAGGTTAACCCAAGAAAAAAGAAGAGAAAAAGTAACCAACTCTCAGATCCAATTGAA TCAGTTTTGCTTTTCTTTCTTTTGATTCTGAATGGACGCTGCTTCGTCTTCTTCGAATCATGCTGAATTCGATTACTTGT TCAAGCTTCTCATGATTGGGGATTCAGGGGTTGGCAAAAGCACGCTGCTTCTCAGCTTCACCTCTGATACGTTTGAGGAT CTTTCTCCCACTATCGGTTAGTTGCGTTGCTTCCAATTTTCATTTGCTTTTTTGTTTTCCTTTTTTTTAAGAATATAATT GTATTGGATTAAACATGAGTTACATGAACAAGTGTTTAACAATTTGCTTAGCACTTAGCAGTTTTTGCCTCATTTCTTCA AATTTGGGGTATCTGTTACATTAGGTCTTGATGGATTTTTAGAGAATTGGGTGTTGAAGAGCTTTTTCTGTTTGTTCAGT TCATACAAAGGCCTCTTTGGCTGGAGAAACCTTTTTTCTATTTTTATTTCTTATTTTTCCTAATAATTTATTTAAATATC ACCTAATTTTCACTTAGTAATTTCAAATATTTTTGCAGGAAATGTATGGTAACAACAGAAGTGTTGCTTTTATCATGTCA TGTACATATCTATAAAACTAGGAGACCAGCTGAAAATAAAATGATATTTTTATAATTATGAATGACTATAGGAAGTTATT TTTTTTGAAAGTGACTATAGGAAGTTAATACATGTAAACAAATTTTATCTTTCATTTCTGTGTTTTAGTTCTGTTGTAGT ATATTTGAATGGGATGAGGTCTGGTTGGTCTTGTCTTTCTACTTTATCTAGTTATGTCTTCAACAGAGCATGCCTGTTAT TTAGTTAAATTCTTGATAACCCTTTCCATTGGCGTGCGAAGTCACATGAAATGTGATGTCTATGTTAGAGTTGTCAAATA GCCGATATAGCGGTGCCATAGCGTAGCGCTCTGAAGGCGGAGCTCATTGCTAGCCGCTATTTGCCGCTATTTTCTGCTCT GAGCATTTGGCATATTGGATTTTTGGCTTTCCATTATTTTACGTGATCCACGATTAACAACACTGGTCTATGTGTAGTTT ATATAGGGCCTATCACCCAATTATATGTCTTAAAAGATATATCTTTCCTTATCTATATGCATTTATTCTTATGGTTTATG AACATGGTGCAGGTGTGGATTTCAAAGTTAAATACGTTACAATTGGTGGGAAAAAGTTAAAACTTGCTATTTGGGACACA GGTAATTTTTCATGTGTTAATTTTATCTTCTGGAAACTCAATCTTTAGTTGTTTTGTCATTTCTGGGGTTTCCTTTTAAT TTTGTGTTCTTTGCTTCCTTTGAATGGTTTCAAAATTTCTATATTAGTTAAGGTGTGGAACTTCTTCTAGTACTACAAAC ATATGTTGTAAATTGAGTGTGGAAGTGCTGGAGCTCTCATGTCCTTAACTGTTTGAGCTATAATTGCAATGAGTGCCATT CGATATTAAATATTTAAGTTTAATTTTAAATTTTTAGTTTTGGTTCAATAATATATTATATATCTTAGGATTACTTGTAT GGGCTTGGAGGTGAACTCTTAATTCATGTAACTACAGAATTTTGCAACTTCTGCACTATTGATTAAAATAAGCGTATGAC AGTATGAGGAATGTACTTTACATTCATGTTATACGACTGGGGAAATTTTTTGTTCATTTATAAAGTGTATGTAGTTAAGA GCTTTATTCAACTATTTAGACAGAGATAAGCTACATTGGTTAGACAGAGATAAGCAACTTCTTGTGATATACTATATTCG ACTAACTATATTGCAAATGTGTACAACTAAAGCTTTAGGGAAGTCCGGTTAACCATATCTGGAATTAGTTAGTTGGATAA TTTTGTACTTTATCTTTGTGCAGCTGGACAGGAAAGGTTTAGAACACTTACTAGTTCATATTATAGAGGAGCACAAGGAA TAATTATGGGTATGTTCCTTTATTTTCTCTATTAACTATATTTCCTGTTTTTTTCATTATTTGTTTGAATTTGGTATCGT TTTTCAGCCGTAAATCATGCAAAATGACTGCATAGTTCATACCTGTTTCTATTCTATCCCTTTCAAATATTTTATTGTAA AGCAGTTAACTTCCATGGCATGGTGTCACTTTTTTCCATATGTTGACCTCTTGTTAGTCTTGTATATGTATCGTGTCATT AAAAGCTATTTTTTACTCCTCGGCGTAAAACAGTCTTCTATCAAATGTCTGTTTTGAATTGTGGAAGAAATACCACCTAT ATTTTGGTAACAAATGCCTAAATTCATGCAATATTGTGTCAAACCAACTATTCTTAAGCATACTTTTGGGCGAAAGTATA TGAATGGTCTTATGCCTAACACGTGCCTTCATGCAAGAGTCTTTTGCGATTGATACTGGACAATGCATAAGGTCCACCCC GCCTTGTGCCTAAGTTTGACTTTTATTTAGAAAAATAGGGAAGTAAGTCAAACTCTACACCATATGGTCATTAGGGCTTT GGTAACATTTTATGAACCAACTACTCCATAAGAACTGTTGGGCAAAGGCTTAAAAATGATTTACTAAAAACAGGAACATG ATTAATATAAAATCATATCAAATGCTTGAAACCTCAGTTATACAATTCAACCTATTACAAAAAATAAAGTCAAAAGCTAT GTGAATAACAGTTGCATTCTGATGGTTGAAGTGATTCTTTTCCTTAAGATGGGCACCTTAGGGCGTGCGGTGGCTGGGGA TTGCTGGGTTTCTGGGTATTGATGATCTTGGCTAGGCGACCACCATGGTGGTGGCGGTTGAGGCAACCGGCGGTGCTCAG GGATGGTGGCTGCCGGAGAACGCCTACGGTGGCCAGGACAGGAGTGGGGTGCTTCCAGAAGGAGAGGCACATCAGAGGTA GAAGCTGGAAACTGGAGATGAGACACGGTTTCCGGGAAAAAAATTCGCACCGATAGAAGTAGGTCTACCTGGAAAGTATG GGTTAGGATTAGGGTTGCCTCTTGTTAGGCTCATGTTAAGAACCAAATGTCCCAAAAGCTTAAGCTATTGGGTAAATGAC ACATGAATGGTTATATTTCTAATACACATGAATCAATGACTATGTCATATATTAAGCTTAAAAAGTACCCATTTACCTCA AGTGTCTTTTAATGGTTGGACCTATAGTTTTCTCTGGTCTTCATTTACTCATAAGTGGCTATCCCTCTCTTAATCTAGCC TAGTTACCAGTGTTCTTATATAGGTCCTCTCTGTACATGCTCAAACCACCGTAGAGAAGACTTTATCATCTTCTACTGCT GCTTTAATATGTTTTCCACATGAATGAAATGACATGTCATATATTAAGCTCAAAACTAGCCATTTACTTCTATATGTCTC TTAATGGTTTAACCTATAGCTGTCTTCGGACAATGTTGTAACTAGATAGAATTACAATGAGTGTATTGAACATATTTTTT AGCGAATCCATTGGTGTTGTTATCTTTCATTGAGTAACTTCTTGGTGTTAGCAAGAATTATTGTCTTTATTTCTTGATCA TAAATCTGGCTAACTTAGTATAAGATGACCTGTTTTGCTTCTAGATTGGTTAAGTTGTAATTGCTGTAGCTACATATTTA TGTTGCACTTTTAAATTGTAAGGTTATTCAGTGAATCTGGGTTATGAATACAGTATATGATGTAACTCGACGGGAGACCT TTACAAATCTATCTGATATATGGGCCAAAGAAATTGATCTATACTCTACAAATCAAGACTGTATCAAGATGCTTGTAGGA AACAAAGTTGATAAGGTACGTTGTTAATGTATTTGCATTTATATAATAATTCATTCTAGCAATTGTATGGGTAGGTCTTG GTTCAGTTAGAAATTTGCGTTTGTGTAGGAATATGTTTCTGTAAATGCTGCTCATATGAAAGCTCTCACATTTAATAATT TCATATTTCAGGAAAGTGAAAGGGTTGTCAGCAAAAAGGAAGGGATTGACTTTGCTAGGGAATATGGATGTCTTTATACT GAATGTAGTGCAAAAACCCGAGTAAATGTTGTGCAGTGTTTTGAAGAGCTTGTAATGAAGGTAAGCGTGCAACTCTCCCC AATTACATAAATGTGGAAAGAAGCCCTAAACCCTTAACCCCATTGGCTTCTTATTTGGATTAAGTAGAGTTCAACCCCTT CAGGAAATGACAGAAATGATTGAAATTTGGGTTCCCCTGTTTATCTGCAGATTTTGGAGACACCAAGCCTCTTGGCTGAT GGCTCATCTGGTATGAAAAAGAACATCTTCAAGCAGAAACCCCCACAGTCTGATGCATCAAATAGTAGCTGTTGTTCATG GTGATTGTAAGGTTTACTTTCAGTATGATCTGGATTTCAAGGGCAATAAAATTTCATCAGATGTACCCAAATTTAATTTC ATTAGAGCCTGCATATCTGGATTAAGTGATGGATCTTCTCAAGAGTTTTACTACCTTTAAAGATCTCCATTTTACTGGGT GTGAGCAAGTAATCAGGCTGGGATTCATATTTCATACTGCTCTTGCATTCCTCTAAGAAAGGTGTTTGTCTATATTTTTT TTTTTGATGTTTTAAAATGATCATAGGTGAATTGACATAATAGAGGAAATTCAGAACGAAAGCTTTCTCTGCAGAAGCGT AACAATTATCATATAACCATCGTTTCGAGCACTGCACAGCATAAAAGTAACATAGAACATGATGGATGGAGTGGCAAATC CGTAAATAGATAAGCCATGGTGTACTGTATTTGGTCATTCAACAAACTTAAATAATTTAGTATAAGTAGAGAACATGATA TATATCATGATGTGATATATATATCATGATGTTAAATAAAAAATCCATGATGGCTTTTTTTTTTGAGGGGCCATGATGGC TTTAACTTAATTTGTGTTCACAGAACTACTCTCTCCGTTCCAGAAAGTTTGTTGTTTTTTATCTTCTTTCAATATTCCAA AATGTTTGTTGTTTTAGAAAGCCAATGTATTTTTTGCTAATTTTTTCTATCTATACCCTTATTTAATACATTTTCTCTCA CTTATCACCTTTCATATTAACCAACCACAACTCTTATC
CDS sequence (LotjaGi1g1v0166100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGCTGCTTCGTCTTCTTCGAATCATGCTGAATTCGATTACTTGTTCAAGCTTCTCATGATTGGGGATTCAGGGGT TGGCAAAAGCACGCTGCTTCTCAGCTTCACCTCTGATACGTTTGAGGATCTTTCTCCCACTATCGGTGTGGATTTCAAAG TTAAATACGTTACAATTGGTGGGAAAAAGTTAAAACTTGCTATTTGGGACACAGCTGGACAGGAAAGGTTTAGAACACTT ACTAGTTCATATTATAGAGGAGCACAAGGAATAATTATGGTATATGATGTAACTCGACGGGAGACCTTTACAAATCTATC TGATATATGGGCCAAAGAAATTGATCTATACTCTACAAATCAAGACTGTATCAAGATGCTTGTAGGAAACAAAGTTGATA AGGAAAGTGAAAGGGTTGTCAGCAAAAAGGAAGGGATTGACTTTGCTAGGGAATATGGATGTCTTTATACTGAATGTAGT GCAAAAACCCGAGTAAATGTTGTGCAGTGTTTTGAAGAGCTTGTAATGAAGATTTTGGAGACACCAAGCCTCTTGGCTGA TGGCTCATCTGGTATGAAAAAGAACATCTTCAAGCAGAAACCCCCACAGTCTGATGCATCAAATAGTAGCTGTTGTTCAT GGTGA
Protein sequence (LotjaGi1g1v0166100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDAASSSSNHAEFDYLFKLLMIGDSGVGKSTLLLSFTSDTFEDLSPTIGVDFKVKYVTIGGKKLKLAIWDTAGQERFRTL TSSYYRGAQGIIMVYDVTRRETFTNLSDIWAKEIDLYSTNQDCIKMLVGNKVDKESERVVSKKEGIDFAREYGCLYTECS AKTRVNVVQCFEELVMKILETPSLLADGSSGMKKNIFKQKPPQSDASNSSCCSW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 182 | 182 | 0.0024 | – | |
| PANTHER | 9 | 212 | 204 | 9.7E-115 | – | |
| PANTHER | 9 | 212 | 204 | 9.7E-115 | – | |
| Gene3D | 10 | 212 | 203 | 5.9E-63 | – | |
| ProSiteProfiles | 12 | 212 | 201 | 32.808 | – | |
| SUPERFAMILY | 13 | 195 | 183 | 7.89E-58 | ||
| SMART | 14 | 181 | 168 | 5.2E-32 | – | |
| TIGRFAM | 15 | 173 | 159 | 2.9E-30 | ||
| CDD | 17 | 178 | 162 | 2.41032E-104 | – | |
| PRINTS | 17 | 38 | 22 | 1.0E-35 | – | |
| SMART | 17 | 181 | 165 | 2.0E-95 | – | |
| Pfam | 18 | 179 | 162 | 1.2E-55 | ||
| SMART | 19 | 181 | 163 | 7.8E-14 | – | |
| SMART | 22 | 214 | 193 | 1.0E-5 | – | |
| PRINTS | 39 | 55 | 17 | 1.0E-35 | – | |
| PRINTS | 57 | 79 | 23 | 1.0E-35 | – | |
| PRINTS | 121 | 134 | 14 | 1.0E-35 | – | |
| PRINTS | 156 | 178 | 23 | 1.0E-35 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi1g1v0166100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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