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LotjaGi1g1v0178600.2

Overview

Field Value
Gene ID LotjaGi1g1v0178600
Transcript ID LotjaGi1g1v0178600.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Glutaredoxin; TAIR: AT5G63030.1 Thioredoxin superfamily protein; Swiss-Prot: sp|Q8L8T2|GRXC1_ARATH Glutaredoxin-C1; TrEMBL-Plants: tr|I3S7F5|I3S7F5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0178600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:34309873..34312983) extracted from Lotus japonicus Gifu genome v1.2.

TATCACAATCTGATCGCGGTACACGACGACGCCGTGGTTTCTAATTTTGTTCTGTTTTCCTCTCAATCTACGTGCCATCC ACCAACATCAAATTTCCAACACCTGTGTGTTCTGTATTCTAACACCTGTCAATTGCCAGAAGCTTCAAGATTTCTCATCA CTGCGTTTTACCCTCTCTTGCTATATTAATGGGGTCTGCGTTTAGTTCAGGGTTGAGCAAGGAAGAGATGGAAACGATGA TGAATAAGGCTAAGGAGTTAGCTTCCTCTGCTCCTGTCTTTGTCTTCAGGTATGTATTTCACTTCAATCTCATCTTTTTT TTTAATGATTAAGGATGGCTTCAATGTTAGGCACTAATTGAGTAGTGTATTTATCTAGTTCATTCTACTTGTCAAACTGC AATTAATTTTTGAGTATGTTTGGTTTGGTATTAAATGCTAACTTGATTTCACAATAGTATGATGATAGTACCAACAATTA TTAGAATTTGAGTGGTCTTAATTCAACTCAAAAGTTAGTTCGTGAGTTAATGGTTGTTTTATTCTTTAAAAAACTATCTT GATCATATCTCTAGTAGAAACCTGGGACTTCTCAACACACGTTCTCACGCCTAACCCAGCCTCTGGGTTGGATATTTGGA GTGTGAGATTTGTAGGATCGAACAACCGAGGGTGGATATACGGGTGTTATTTACTTAACGGATCTAGGATAGACTCTAAT ATCATATTAGAATTTGGAGATCTAACTCAACCCAAAAGTTAGCTCATGAGTTGAGGGTTGTTCTACCTTTTATTAAGGTT ATCTTGGTTATCAATGTGTGACTTTTCAATATCAACAGAGAAACTAGAATTTTACGGTTGAGTTTAAGATGAAGAGGAGA AGCAGAATTTTGCCACTTCAAGGGAAATTCAAACATACATTAGGTTTAGACCCAAAACCACGTTCATTGAAAAGCAACAA TAGCTAATGTTTGTTCAAACTCACATCCAATCGTGGTTTATTTCAATGTAGTATACCAATTGATATGTACTATGTAGTGT TTGGCAAGTATCATTTTTCCACTGATCAGATTCTAATTTTAGAATTAGTTTGGTTTCATTAAAAAATGGAGAAATTTGTG TACAATTTTCTTTCATTACTGAGATTTTCCTCAATTGTACTTTTTTCATTTTTATTTCCCAATTCTGACTTTGGTAGTTG CAACTTTGGAAATTGATTGTGCATATATGTCCCTTTAGCTTTAAATACCAATTGGTGTCTTACATTTTCACTCACCCTTA TTTTTCATTTTGATAAAACAGCTTCTTTTTATTTTTTATATCTTAATAACCTATATTGTAAGTTTTGTTCTGGCAGTAAG ACTTACTGTGGTTACTGCAAGCGGCTCAAGGATCTCCTCACACAACTAGGAGCAACCTACAAGGTCATTGAATTGGATAC AGAACGTAAGTGTGCTTTAAATGGAAATGCTCTCTCAATGGAATTCTTGTTTGTTCCATTAAATGCGTGGTTAGAGACCA GTTAAATGCAATATGAATGAACTTTTAAGTTTTATCTCAATTTATAAGAACAGTTCTCTCTTTTATTTTTCTTAAACTAC ATGTTAACATCCATTTGCTATTCAAATTAGTCTAGTGTTGGTGTGAGGAGTTTGAGGACTGCTTTTGTTGTCCCTTCTAT AGGTTTTGCCTGATATTGACCCTTTCTTACATTTGAAGTTTCCCAATTAGATGGTTAGATAACTGTGGAGGTGAATTGGT TGCTTCTGAACACTTGTCTGATAGTTTATGCATGACAGCACATGTCAGAGTTACTTTGGTTTCTTTTTTTCTTGACCAGC AAAAGAAAATTTATCAATAATCGTAAGAGTATCATCTATTTTTTGATACTTTTCTATTTGCATCATGATTTATGCAAATA TGTGAACTTTATCCCCCATTTTATATCCGACTTAGAGTCTAATGGTCTATTTTCTTCTGCCTAGAGAGCTAAACATTACT TTCAGGAAACTAATTTGCTACCAATTCTTCGTGATGCCTCTTTTTTGTGATTTCGTTTTCAAGAACCTAATTTGCTATTA ATTTTGAAGGTGATGGAGATGGTATTCAATCAGCTCTAGCTGAGTGGACAGGTCAGAGGACGGTGCCAAACGTGTTCATT GGAGGAAAACACATTGGTGGTTGTGACAGTAAGCCCCCCCCCATTTGCTATTAATTTTGAAGGTGATGGAGATGGTATTC AATCAGCTCTAGCTGAGTGGACAGGTCAGAGGACGGTGCCAAACGTGTTCATTGGAGGAAAACACATTGGTGGTTGTGAC AGTAAGCCCCCCCCCCCCTCCCTCCCCTCTTCTTTTTCCCTCTTTTGTGCCAATCATTTTCAAAGATTTGGATCTCTTGA CAAAATTTCAACAAAAGCAAACTTGTGGAAACTTTCACATAAGAGGTTCATCTCACCTATTTCATACAAATGAAGAGAGA AATAGATACAAAGTTTCACCACAATAGAACTTAGGAAATTTTCATGTGACAGCTGACACCTCTCAACTGTCTCATACACC ACATTTTCTCTATATCTCTTTTTTCCTATCACATCACATTGTATATCTCATCTATCATTTATCTCTCTTCTCTTCGTATC TCACATCAGATGTTTACATCACTTAATTAGTTAATTGGATCTACACCAAACATTTCTTTTTTTCATCATCTTTCTGTATG GTACTATCTTGTCTTGCAGCTGTTTTGGAGAAACACCGGGCAGGTCAATTGGTTCCCCTTCTCAATGACGCTGGAGCCAT TGCCAATAACTCTGCTCAGCTCTGAAAATCCACGGAATGTTTTCTTCTATAAGCTGAGAAAAGGAAAACGTATATGCTGA AATTCTGAGAATGTTTTGTATGGATATAAAGGGCAACCAATAAGCACTGTAATGTGCTCTAGTATGGGAAAGAGGAATCC TCTTGTGACAATAAGAGGAAACCTAATCATTGTCATAAATGTGTGTATGTAACATCAAAATCGAAAATATGAAATTGTGT GATTATTTTTAATGGTTATTTAGTTTTTGCAGGGATTGCTAGCTTAACATTTTTTATATGGAGAATTGCTA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0178600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGGTCTGCGTTTAGTTCAGGGTTGAGCAAGGAAGAGATGGAAACGATGATGAATAAGGCTAAGGAGTTAGCTTCCTC TGCTCCTGTCTTTGTCTTCAGTAAGACTTACTGTGGTTACTGCAAGCGGCTCAAGGATCTCCTCACACAACTAGGAGCAA CCTACAAGGTCATTGAATTGGATACAGAACGTGATGGAGATGGTATTCAATCAGCTCTAGCTGAGTGGACAGGTCAGAGG ACGGTGCCAAACGTGTTCATTGGAGGAAAACACATTGGTGGTTGTGACACTGTTTTGGAGAAACACCGGGCAGGTCAATT GGTTCCCCTTCTCAATGACGCTGGAGCCATTGCCAATAACTCTGCTCAGCTCTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0178600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGSAFSSGLSKEEMETMMNKAKELASSAPVFVFSKTYCGYCKRLKDLLTQLGATYKVIELDTERDGDGIQSALAEWTGQR TVPNVFIGGKHIGGCDTVLEKHRAGQLVPLLNDAGAIANNSAQL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.30.10
9 124 116 2.2E-42
IPR036249
PANTHER
PTHR45694
17 120 104 2.3E-57 –
SUPERFAMILY
SSF52833
18 117 100 2.12E-32
IPR036249
ProSiteProfiles
PS51354
18 118 101 25.378
IPR002109
CDD
cd03419
29 110 82 9.17547E-47 –
TIGRFAM
TIGR02180
30 110 81 1.0E-28
IPR011899
PRINTS
PR00160
30 48 19 4.0E-17
IPR014025
Pfam
PF00462
30 92 63 8.9E-21
IPR002109
PRINTS
PR00160
75 88 14 4.0E-17
IPR014025
PRINTS
PR00160
89 102 14 4.0E-17
IPR014025

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0009055
Molecular function Electron transfer activity Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
Subterm of
GO:0015035
Molecular function Protein disulfide oxidoreductase activity Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds.
Subterm of
GO:0045454
Biological process Cell redox homeostasis Any process that maintains the redox environment of a cell or compartment within a cell.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0178600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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