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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0182200 |
| Transcript ID | LotjaGi1g1v0182200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclic nucleotide-gated channel; TAIR: AT3G48010.1 cyclic nucleotide-gated channel 16; Swiss-Prot: sp|Q9SU64|CNG16_ARATH Probable cyclic nucleotide-gated ion channel 16; TrEMBL-Plants: tr|I1JX56|I1JX56_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0182200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:35507413..35511941) extracted from Lotus japonicus Gifu genome v1.2.
TGAAAATAAAAATAAAATATTGCGATCCTGGAGGAGAAAAATTAGTGTTCTTTCATTAGAAGGTAGGAGCCATTTCTTTC TCCGCATTTTTTGGAATCAAATTTTTTTCTCTAGTGATGAGAGAACAAGAAGAAGAAGACAATAGCGGAAGACGACGACG TCAACAACGATGATGCACCCAGACCTCCACCGTTTCGGCGTCTCATCCCATTTCCGAAGCCACTTCCCCGCCTCATTCTC CCTCCGTAAGAAGGTTCCATGGTGGTACCAAATCCTCGACCCTCGGTCCAAATTCGTCGCACAATGGAACCGCACGTTCC TCTACTCTTGCATCGCCGCTTTGTTCCTCGACCCTCTCTATTTCTATTTCCCTATCACCGGCGATAAGGCTTGCATGCAA ACCGATTTGGTCCTCGGCGTCTTCGTCACGTTCTCTCGCACCGTCGCTGATTTGTTCTTCTTTTTTCACATTGTTCTCAA GTTTCGCACCGCATTCGTTTCCCCTAAAGATCGTGTTTATGGCCACAAGGAACTTGTTACTGATCCCTACCAAATTGCGT CGCGCTACTTCAAGTCTGATTTCGTCGTTGATTTCCTCGCCACACTTCCTCTTCCACAGGTACGCACGTAGTCTCTATTC TTTTTGAAATTCGCTTTCATTCAATCAAGAGTAAACCACATACGCAAGTACATCATCATCCTGGATGATAGAGGAAAACT CCTGAAGAGCCTCTTCAATCCAAACGTAAAAACCACAACGAAAACCAATTTTAGCTAGAGTGTCCGCCGCACTTAAAATG ATTGATTGTTGTTTAAGGCGGTTATGCACACAGAGCTCGTTAATTGATATATAATTACACTAAAACACCCGGTTACGCAC ATTATATGCGTGATTGCTCAATTTCTTTTAGGTAATGAAGTCGCTCTGTTAAACAATTTGGATTTTTTTTTTCAATTACA TGGATACAATTTTCATTTTTTATTCAAATATTTCAATGTTTAGGAAGAACTTTGCCGTGGTTGTGAACATGATTGACTTA GTAGAAGATACATTTTATTTAAAAAATTGAAGGATGAGATAAAATTTAAATAATGTCAGAAGCAGGAATTTACATAAATT TAGTGAAAATTTGATAGATTTTAAATGAAGTTGTAGAATGTGAGATGAAAGTTTAAAGAAAGAAAAATTCCACACTTTTT ATTTTGAGTTCAGTGCTTAAATTTTTGAAGATTATGATTACAAAATTAGAATTTAAGAAATTTAAGTGAATAAAAATTAT GAAGGACTTCATGTAAGCATCACAAAAGTTAAGGGGTATAACTTGTTCAAAACTTTATTAAGATATAATAGTGGAACTGA AAATGCTGTTAAATTATGATCTTAATAATATTGTTGATTTTAAACTGTCGAAATGATCACTAGTGTGTTACCATACTTAG AATTGGAACAAATGTGACTGATCCAGCTGCAATTGAGTGGCAATGTGATTGCAGTACTTGGAAATATTTAATATTATTGC TTCTGTTGTCAATTTAAAACTATGTGATGCATTGTGGACCTCAATTTAAAAGACTTACTATTCAATGTCTATATGATGGA AGGATACAACTTTGTTTTTTGGTGCGAAACAATTATTAAGCGCCTGCAATACTACAATTTATTTTTACTCTTTTTTAATT GTTGTATGCAATTGCAGATAGTGGTTTGGTTTGTGATTCCGGCAATTAAAGATTCAACGGTGGCTCATGTAAACCACACC TTGTCTCTGATTGTACTCATTCAGTACATTCCTCGGCTGTTTCAAATTTTTCCCCTGCAACGGCGAATCTTGAAGACTAG CGGGCTTATAGCCAAAACTGCCTTGGCAGGGGCGTTGTACAATCTTGGTTTCTATATGTTGGCCAGTCATGTAATTCTTC TGTTCATTGAAAACAGTTCCAAGTGTCAAATTTTAAAAATTTGTAACAATTCCAAAAATATTGATAAATTGTGTTTCCAA TATTGTGTTGTCAGTGCAGATTTTAGGAGCTTCCTGGTATGTTGCTTCCATTCAGCGCCAATTTGAGTGCTGGAGAATAA CTTGCAGGAAGGAGATGAATAGAACACACTCTCCATCTTGTAATCCTTTGTTTCTAGATTGTGCTAGCATGACCAACCCT GAGCGCCAAGCTTGGTTTAGACACACTAAAGTCCTTACTGATTGTGATGCCCTCAATAATAAAAACCACTTTCAGTTTGG AATGTTTGCTGATGCTTTTACAGATCATGTCTCTTCCTCAAGATTCTTCCAGAAATATTTTTATTGTCTCTGGTGGGGTT TGAAAAATCTAAGGTACATCAGTTTCAGTTTATCATACTCAATTGATAGAATAATGTGATTAATTTGATCATCTCCATCC TCTTTCCATCCAAGATTAGAGCCGTCAATTTTACATCCAATGGTCTAAAAAAACTCATAGTCCGAAGTTCACTTCGTGGT CAGAGTTTCGAGCTCTTTTAGACTGTTACATATAAAATTAATGGCTCCAATGTTAGATCTCAAATGGAGATATGATGGAG AGAAGTTGAATGTCTTTTCAAGTTCGGATTGAAGACATAAGTGCACGAAATTTATATCCATAGTGAGCACTCACTTTTTA AGGTTCCCTAATAGGTTCTAAACTCTTTTGTTTTATGTAGTTCATATGGACAAAATATTCAAACAAGTACTTACAGTGCT GAAACGTTATTTTCAAGTTTCATATGCATTGCGGGCCTTATCCTATTTGCGCATCTCATTGGTAACATGCAGGTAATGTA AAAGTAGTCCTATTCTCTAGTCATCATTTGGATGCAGAACATCAAATTAATTAAAAGGCCTCTTTATTAAAGAAATGACA GTGTCCTAAAAGTCATAACAATGTCTCTTGATTTTTCCTTTTTTTTTGAAAAAGAATTATCTACAATCTTCAACAGCAAG ACTTGAGGAGTGGAGGCTTAGACAAAAGGATACAGAAGAGTGGATGAATCATCGGCAACTTCCACAAGAACTGCAAGAAC GTGTTCGCAGGTTTGTTCAATATAAATGGCTAGCCACTAGAGGTGTGGATGAAGAAGCTATTTTACGCTCTTTGCCCGTA GACCTTCGGCGCGAGATTCAGAGGCATCTTTGTCTTGATATTGTCCGACGAGTAAGCTTTTTTTTATTAGTTGAATACAC ACCTTAAACTCTTGATAAGACATGCAGAAGACTATCTGAGACATATCTGAGTTTGGTTCATCAGATAGTCACTTTAAATG GTAAAGTAAATAATTCCAACAATTGATTGAGAAATTAATTGTTGAGCTTCTGATTATGTATATGACAAACTATAGAGCTC TTTAACTTTTAACCTTGAATTTTCAATCAAGAGTTGATGTGACTTACTTTAGTCTTCAAAATGTCTATTGTCTACCTCAT CTCAGAGGAGCTAAATTTGATATGTTTCCAATTTTATTGCATAGGAATTTGTTGGGGAATCTTTAGACTTGTACTTTATT ATAGGTCCAACCAGTTAATATAACATAGATTTCTTTCTAATTCTTGTTATATTCAGGTTCCTTTTTTTGGCCAAATGGAT GATCAGCTTCTAGATGCTATATGCGAACGTCTTGTTTCATCCCTTAACACAAAAGACTCACACATTGTTCGAGAAGGTGA TCCAGTAAGAGAAATGCTTTTCATCATTAGAGGACAAGTAGAGAGCTCCACAACTGACGGTGGTAGATCAGGATTCTTCA ACTCCATCACCCTCAAACCCGGTGACTTCTGTGGTGAAGAATTGCTAACGTGGGCTCTTGTGCCAGCCTCGAGTCTTAAC CTTCCATCTTCGACTCGAACGGTGAAGACTCTCACTGAAGTTGAAGCATTTGCACTCAGAGCAGAGGACCTCAAATATGT CTCAAACCAGTTTAAGCGCCTCCACAGCAAGAGACTCCAACATGCTTTCCGGTACTATTCCCACCAGTGGAGAGCTTGGG GGTCTTGCTTTATACAAGCTGCTTGGAGGCGTCATCGCAAGAGACAATTGACAATGGAGTTGATGGAGAAAGAAAACTTG TATTATTCAAATGTGATGGAGCTAGAAGATGATGAAGAAAATGGTGCAGAAGAAGGTTTAGTTGGGGACAATGCAAGCCA TGGTCAAAATCTTGGGGCTACAGTTTTGGCTTCAAAATTTGCTAAGAAAACTAAAGGGGCGGTTAAGAGAATACCCATCC CTGAGAGTAGCAGTTTAAAGATGCCCAAGATGTTCAAGCCAACAGAGCCTGATTTCTCAAGATTCCATGATGATTAGTGT AAGTCTCATGAGATAACAACATAACAATGTTACATCTCGCAATTTAAATTTAATGTTATACATAAATTTGTAAAGTGTCT GGGTTCAATATATCACTAGTGTATGTTAGTAGTACCCAAGAAACAAAGTGGCTTAGAGCAATGTTTACGTGTAAGATTAT ATACAATACGACAATGACAACTACTTATTATTCAATCACAATTTTAACA
CDS sequence (LotjaGi1g1v0182200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCACCCAGACCTCCACCGTTTCGGCGTCTCATCCCATTTCCGAAGCCACTTCCCCGCCTCATTCTCCCTCCGTAA GAAGGTTCCATGGTGGTACCAAATCCTCGACCCTCGGTCCAAATTCGTCGCACAATGGAACCGCACGTTCCTCTACTCTT GCATCGCCGCTTTGTTCCTCGACCCTCTCTATTTCTATTTCCCTATCACCGGCGATAAGGCTTGCATGCAAACCGATTTG GTCCTCGGCGTCTTCGTCACGTTCTCTCGCACCGTCGCTGATTTGTTCTTCTTTTTTCACATTGTTCTCAAGTTTCGCAC CGCATTCGTTTCCCCTAAAGATCGTGTTTATGGCCACAAGGAACTTGTTACTGATCCCTACCAAATTGCGTCGCGCTACT TCAAGTCTGATTTCGTCGTTGATTTCCTCGCCACACTTCCTCTTCCACAGATAGTGGTTTGGTTTGTGATTCCGGCAATT AAAGATTCAACGGTGGCTCATGTAAACCACACCTTGTCTCTGATTGTACTCATTCAGTACATTCCTCGGCTGTTTCAAAT TTTTCCCCTGCAACGGCGAATCTTGAAGACTAGCGGGCTTATAGCCAAAACTGCCTTGGCAGGGGCGTTGTACAATCTTG GTTTCTATATGTTGGCCAGTCATATTTTAGGAGCTTCCTGGTATGTTGCTTCCATTCAGCGCCAATTTGAGTGCTGGAGA ATAACTTGCAGGAAGGAGATGAATAGAACACACTCTCCATCTTGTAATCCTTTGTTTCTAGATTGTGCTAGCATGACCAA CCCTGAGCGCCAAGCTTGGTTTAGACACACTAAAGTCCTTACTGATTGTGATGCCCTCAATAATAAAAACCACTTTCAGT TTGGAATGTTTGCTGATGCTTTTACAGATCATGTCTCTTCCTCAAGATTCTTCCAGAAATATTTTTATTGTCTCTGGTGG GGTTTGAAAAATCTAAGTTCATATGGACAAAATATTCAAACAAGTACTTACAGTGCTGAAACGTTATTTTCAAGTTTCAT ATGCATTGCGGGCCTTATCCTATTTGCGCATCTCATTGGTAACATGCAGAATTATCTACAATCTTCAACAGCAAGACTTG AGGAGTGGAGGCTTAGACAAAAGGATACAGAAGAGTGGATGAATCATCGGCAACTTCCACAAGAACTGCAAGAACGTGTT CGCAGGTTTGTTCAATATAAATGGCTAGCCACTAGAGGTGTGGATGAAGAAGCTATTTTACGCTCTTTGCCCGTAGACCT TCGGCGCGAGATTCAGAGGCATCTTTGTCTTGATATTGTCCGACGAGTTCCTTTTTTTGGCCAAATGGATGATCAGCTTC TAGATGCTATATGCGAACGTCTTGTTTCATCCCTTAACACAAAAGACTCACACATTGTTCGAGAAGGTGATCCAGTAAGA GAAATGCTTTTCATCATTAGAGGACAAGTAGAGAGCTCCACAACTGACGGTGGTAGATCAGGATTCTTCAACTCCATCAC CCTCAAACCCGGTGACTTCTGTGGTGAAGAATTGCTAACGTGGGCTCTTGTGCCAGCCTCGAGTCTTAACCTTCCATCTT CGACTCGAACGGTGAAGACTCTCACTGAAGTTGAAGCATTTGCACTCAGAGCAGAGGACCTCAAATATGTCTCAAACCAG TTTAAGCGCCTCCACAGCAAGAGACTCCAACATGCTTTCCGGTACTATTCCCACCAGTGGAGAGCTTGGGGGTCTTGCTT TATACAAGCTGCTTGGAGGCGTCATCGCAAGAGACAATTGACAATGGAGTTGATGGAGAAAGAAAACTTGTATTATTCAA ATGTGATGGAGCTAGAAGATGATGAAGAAAATGGTGCAGAAGAAGGTTTAGTTGGGGACAATGCAAGCCATGGTCAAAAT CTTGGGGCTACAGTTTTGGCTTCAAAATTTGCTAAGAAAACTAAAGGGGCGGTTAAGAGAATACCCATCCCTGAGAGTAG CAGTTTAAAGATGCCCAAGATGTTCAAGCCAACAGAGCCTGATTTCTCAAGATTCCATGATGATTAG
Protein sequence (LotjaGi1g1v0182200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMHPDLHRFGVSSHFRSHFPASFSLRKKVPWWYQILDPRSKFVAQWNRTFLYSCIAALFLDPLYFYFPITGDKACMQTDL VLGVFVTFSRTVADLFFFFHIVLKFRTAFVSPKDRVYGHKELVTDPYQIASRYFKSDFVVDFLATLPLPQIVVWFVIPAI KDSTVAHVNHTLSLIVLIQYIPRLFQIFPLQRRILKTSGLIAKTALAGALYNLGFYMLASHILGASWYVASIQRQFECWR ITCRKEMNRTHSPSCNPLFLDCASMTNPERQAWFRHTKVLTDCDALNNKNHFQFGMFADAFTDHVSSSRFFQKYFYCLWW GLKNLSSYGQNIQTSTYSAETLFSSFICIAGLILFAHLIGNMQNYLQSSTARLEEWRLRQKDTEEWMNHRQLPQELQERV RRFVQYKWLATRGVDEEAILRSLPVDLRREIQRHLCLDIVRRVPFFGQMDDQLLDAICERLVSSLNTKDSHIVREGDPVR EMLFIIRGQVESSTTDGGRSGFFNSITLKPGDFCGEELLTWALVPASSLNLPSSTRTVKTLTEVEAFALRAEDLKYVSNQ FKRLHSKRLQHAFRYYSHQWRAWGSCFIQAAWRRHRKRQLTMELMEKENLYYSNVMELEDDEENGAEEGLVGDNASHGQN LGATVLASKFAKKTKGAVKRIPIPESSSLKMPKMFKPTEPDFSRFHDD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 48 | 48 | - | – | |
| PANTHER | 2 | 686 | 685 | 0.0 | – | |
| PANTHER | 2 | 686 | 685 | 0.0 | – | |
| SUPERFAMILY | 37 | 367 | 331 | 9.58E-28 | – | |
| Pfam | 46 | 372 | 327 | 1.4E-28 | ||
| Phobius | 49 | 69 | 21 | - | – | |
| TMHMM | 49 | 71 | 23 | - | – | |
| Phobius | 70 | 80 | 11 | - | – | |
| TMHMM | 81 | 103 | 23 | - | – | |
| Phobius | 81 | 103 | 23 | - | – | |
| Phobius | 104 | 137 | 34 | - | – | |
| TMHMM | 138 | 160 | 23 | - | – | |
| Phobius | 138 | 160 | 23 | - | – | |
| Phobius | 161 | 165 | 5 | - | – | |
| Phobius | 166 | 185 | 20 | - | – | |
| Phobius | 186 | 205 | 20 | - | – | |
| Phobius | 206 | 230 | 25 | - | – | |
| TMHMM | 208 | 230 | 23 | - | – | |
| Phobius | 231 | 341 | 111 | - | – | |
| Phobius | 342 | 360 | 19 | - | – | |
| TMHMM | 342 | 359 | 18 | - | – | |
| Phobius | 361 | 688 | 328 | - | – | |
| Gene3D | 368 | 436 | 69 | 1.9E-15 | – | |
| SUPERFAMILY | 374 | 571 | 198 | 3.54E-37 | ||
| Gene3D | 443 | 563 | 121 | 3.5E-38 | ||
| ProSiteProfiles | 445 | 557 | 113 | 10.253 | ||
| CDD | 445 | 576 | 132 | 9.97125E-18 | ||
| SMART | 445 | 573 | 129 | 1.9E-10 | ||
| Pfam | 468 | 555 | 88 | 3.2E-8 | ||
| MobiDBLite | 661 | 688 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
| Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0182200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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