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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0183900 |
| Transcript ID | LotjaGi1g1v0183900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transducin/WD40 repeat protein; TAIR: AT5G50120.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|O48716|JGB_ARATH Protein JINGUBANG; TrEMBL-Plants: tr|I1KCK1|I1KCK1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0183900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:35903167..35906483) extracted from Lotus japonicus Gifu genome v1.2.
CGCTCTACAGAGAATCCTAATCCAAGTTAATATAAAATAGAGATGAATAGGAAAAATTAGTGTGAATTATCAATAATATA TATCAAAACATTGTGTGTGAGATTTTCCTTTCCTTAACCTTGAGGACCAATCTTGTTTCCCTGCCATGTCCCAGCAGACC CCACACACCCAACTCCAATATAACTTGAGCAATATGAGCAGCCTCTGCTCTGCTATATAATGCACCAGTCTCCATATATA TAATATTACCTCCTTTCACTTTCTGCTATACCATTTTCACTCACCTTACCATATGAATCATCAATCATGGACTACCATCA AACTTACAGTGCCTCTTCTTCCTCATCTCACTCTAACCACCTTCAACCACGCGTGAATTCACAACGCAGCCTCGCCTCAG TTCCTTCCCTTAACAACAACCACCACCACTCTTCCTCCGCCGTCTACCACCACTGCCTCACCACCCTCAAAGTCCAAGAC TCATCCTACCCTTCCTCTCTGACTCTCTCCGGAAAATTTCTCTATACCGGTTCCTCCGACCGAGAAATCAGTTCCTGGAA CCGCAGCTTTGAAGATTCAGATTCAAATTCAACCACCAACAAGGTGGTTGCCGGAAAAGGAGCCGTAAAATCCTTAGTGA TCCAATCCGACACCCTTTTCAGTGCCCACCAGGACCACAAAATCCGTGTCTGGAAAATCAGCAACAGCCACCAAAAGCAC ACCCATTTAGCCACTCTCCCCACGCTTGGCGACCGCGCCGCCAAGGTTCTCCACCCCAAGAATCAAGTCCAGATTAGGCG ACACAAGAAATGCACGTGGGTCCACCACGTGGACACTGTGTCCGCCCTGACCCTGTCCCAAGACGGAGCCTTGTTGTACT CCGTCTCGTGGGACAGGGCCATCAAAATCTGGCGGACTAGGGACTTCACCTGCCTGGAGTCCCTCACCAACGCGCACGAC GACGCCATCAATGCAGTCGCGGTCTCCACCGACGGCCGCGTCTACAGCGGATCAGCCGATAAAACAATCAAAGTGTGGGG GAAACTCCAGGGGGAGAAGAAACATTCATTGTTGGACACCATGGAGAGACACAACTCCGGGGTCAATGCGTTAGCCCTGA GTGGCGATGAGTCGCTGTTGTATTCCGGCGCGTGTGACAGGTCGGTGCTGGTGTGGGAGAAGGAGGGGGAGGATGGTGGG AGAATGGTGGTGGTGGGTGCGTTGAGGGGGCACACTAATTCAATTTTGTGCTTGGCTGTTGTGGCGGTTTTGGATTTGGT TTGTAGCGGCTCTGCTGATAAAACAATTCGGATTTGGAAAGGTATTGGTCACAGGGAATATTCGTGTTTGGCTGTTTTAG AAGGACATGCGGGTTCAATCAAGTGTTTAAGTGCTGTGGTTGATTTTGATGATGCGGCGGATTCTGAAGCGTCTTTTCTT GTTTATAGTGGCAGTTTGGACTGTGACGTTAAAGTTTGGCAGATTTTTGTTCCTGCTAGCTAAATCTGAGGATAGTTCTT CATTTTGTCTAATTTATTGAGCACGGTTTAAAGGGAGATCGATGATGTTGGGCATTTCTTTTTCTTGTCCCTGCCTTCCT TCTTGTCCTGCTACTGATTTTTCGCCTCTTCAAGTTGATTAGAAGTTGAGCTAGCTGCGATGTCTGTACTAGACTACTAG TGCCTAGTGGTGGTGATCTTTGTTGACTGAAAAGTTGTTAGTGTGTGGAAGTAAATATAGCTAAATATTTTTAATAAGAA ATTTGATGCCTCTACGTAAGGGTATCTTTTTAAAATGTAAAATATTAGATTAGAGATTATTATAAATTATAAAATATAAA AAGTTTCATGTGGATAACAAAAAGTGGATTTAGACACATATATTGAGAAGATGAAAGTGAGATAAGTGGTAGATGTAATA GGTATTCCGTCACAATTGTAATGATTCCAACATAGCGTTCGACTAGTAATGATCGGACCACCATAGACATCAGAACCACA CGAAGAGGAAGTAGAAGAACTCACTCTGATCATAACAACCTGTATGAAGGAAGACGAAACATGATAAATGAAAAGGAGCA TTAAAGCAGATTGGGACATATCCCAACGACTCCCAAAAGCTGGCAACAACTTGAAATAAAACATGAGTCTAAAAAAGAAA GGCTAAAGAGGAACGAGTCTTCCTGATCAGTTCACGAATGTACCTCTTAGAAGAAACATTGCAGCTCCGCAAACATTTTA AGAGAGAACAAAAAATTTATTGAACTCTATCATTAAAACACAAAACTGGAACGGGGATCAAGAAGACACCAAAAAGCAGT GTTAAGAAAATCGAACCGGACTGGTCGGTAGAACCGGTTCAACCGGGAACCAAGTGTAAGACCAAGATTTGATCAGGTGG TACAACTCTATGTTTTGATGATAACAAGTTTATTATTATGTATGAACAATTATGGTACTCTAACATTTGTCTTTTAAGTT GTGACAGACAGGTTCTGATTCTGATTCAAAGATTATATATATATCAGAAGTTGAAGACCCAAGAGTAACCAATGTAACGC TTCTGCAATCACTATGTTCTTCTGAATGGTAGCAAACGCTTCAGATACTCTAAAGATTAAAGCTCTGATGTGGACTCTGA AAGACTCAACCGCTGAAGCTCTGAAGACCAGATGTTCTGAGGAACGGTACAGAAGCTGAAGACTTGAAGACTCTGAAGTC CTAGAGTAAGCTGACTCACAAGACCAAAAGTACTTCATGTTCTGAAGACCAAAAGTTCAGGTGAACAGTCCAGAAGCAGA AGTTCTGAAGGTCAGAGGATCCAAGCTTCCTTCTGACTCTGATCACATAGCTTCACAAGTCCCAACATGAAGCGTCGCCA AAGATCAAGAGTCAAATAGGCTAAGGCAATGTCATTGTCATTCGTACAAAAGCAAGTGTACTATTCTGACCGTTTTACCT ACGAAGTTCAGCCATAGCAGGCTCTGGAAATCCTAGAACTGCCCTCCAACGGATGGATTCTTTCAACGGACATAAACCCT AAACCTTGGAGTATTTAAAGGCTAAAGATAGAAGAAATTGGCCAAGAAATTATTGAGCATACAAGTGAAAACCTTCAAGA AAAATACCTTAGCAATATTTCTTCATTGTTCTTATAGTGTTTACTTCTTCTTATTTCAGAAGCATTTCTTTGTAAACCAA ACCTTTTACAAACCTTGTTTGTATTTCCTTGAGAGACCAGTGAGGTCAGTATTCTTGAGAAGACTAAGACAAGGTTGTCT TAGTGTTGCTAGTTCATAGGTTGTTAGTCACTAAGCA
CDS sequence (LotjaGi1g1v0183900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTACCATCAAACTTACAGTGCCTCTTCTTCCTCATCTCACTCTAACCACCTTCAACCACGCGTGAATTCACAACG CAGCCTCGCCTCAGTTCCTTCCCTTAACAACAACCACCACCACTCTTCCTCCGCCGTCTACCACCACTGCCTCACCACCC TCAAAGTCCAAGACTCATCCTACCCTTCCTCTCTGACTCTCTCCGGAAAATTTCTCTATACCGGTTCCTCCGACCGAGAA ATCAGTTCCTGGAACCGCAGCTTTGAAGATTCAGATTCAAATTCAACCACCAACAAGGTGGTTGCCGGAAAAGGAGCCGT AAAATCCTTAGTGATCCAATCCGACACCCTTTTCAGTGCCCACCAGGACCACAAAATCCGTGTCTGGAAAATCAGCAACA GCCACCAAAAGCACACCCATTTAGCCACTCTCCCCACGCTTGGCGACCGCGCCGCCAAGGTTCTCCACCCCAAGAATCAA GTCCAGATTAGGCGACACAAGAAATGCACGTGGGTCCACCACGTGGACACTGTGTCCGCCCTGACCCTGTCCCAAGACGG AGCCTTGTTGTACTCCGTCTCGTGGGACAGGGCCATCAAAATCTGGCGGACTAGGGACTTCACCTGCCTGGAGTCCCTCA CCAACGCGCACGACGACGCCATCAATGCAGTCGCGGTCTCCACCGACGGCCGCGTCTACAGCGGATCAGCCGATAAAACA ATCAAAGTGTGGGGGAAACTCCAGGGGGAGAAGAAACATTCATTGTTGGACACCATGGAGAGACACAACTCCGGGGTCAA TGCGTTAGCCCTGAGTGGCGATGAGTCGCTGTTGTATTCCGGCGCGTGTGACAGGTCGGTGCTGGTGTGGGAGAAGGAGG GGGAGGATGGTGGGAGAATGGTGGTGGTGGGTGCGTTGAGGGGGCACACTAATTCAATTTTGTGCTTGGCTGTTGTGGCG GTTTTGGATTTGGTTTGTAGCGGCTCTGCTGATAAAACAATTCGGATTTGGAAAGGTATTGGTCACAGGGAATATTCGTG TTTGGCTGTTTTAGAAGGACATGCGGGTTCAATCAAGTGTTTAAGTGCTGTGGTTGATTTTGATGATGCGGCGGATTCTG AAGCGTCTTTTCTTGTTTATAGTGGCAGTTTGGACTGTGACGTTAAAGTTTGGCAGATTTTTGTTCCTGCTAGCTAA
Protein sequence (LotjaGi1g1v0183900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDYHQTYSASSSSSHSNHLQPRVNSQRSLASVPSLNNNHHHSSSAVYHHCLTTLKVQDSSYPSSLTLSGKFLYTGSSDRE ISSWNRSFEDSDSNSTTNKVVAGKGAVKSLVIQSDTLFSAHQDHKIRVWKISNSHQKHTHLATLPTLGDRAAKVLHPKNQ VQIRRHKKCTWVHHVDTVSALTLSQDGALLYSVSWDRAIKIWRTRDFTCLESLTNAHDDAINAVAVSTDGRVYSGSADKT IKVWGKLQGEKKHSLLDTMERHNSGVNALALSGDESLLYSGACDRSVLVWEKEGEDGGRMVVVGALRGHTNSILCLAVVA VLDLVCSGSADKTIRIWKGIGHREYSCLAVLEGHAGSIKCLSAVVDFDDAADSEASFLVYSGSLDCDVKVWQIFVPAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 37 | 37 | - | – | |
| PANTHER | 11 | 396 | 386 | 2.3E-178 | – | |
| PANTHER | 11 | 396 | 386 | 2.3E-178 | – | |
| Gene3D | 39 | 148 | 110 | 8.6E-9 | ||
| SMART | 47 | 85 | 39 | 21.0 | ||
| SUPERFAMILY | 65 | 393 | 329 | 5.49E-47 | ||
| ProSiteProfiles | 68 | 139 | 72 | 9.23 | ||
| CDD | 68 | 392 | 325 | 1.80352E-45 | – | |
| SMART | 93 | 130 | 38 | 1.8 | ||
| PRINTS | 117 | 131 | 15 | 2.6E-5 | ||
| Gene3D | 149 | 296 | 148 | 1.8E-29 | ||
| SMART | 164 | 203 | 40 | 4.4E-4 | ||
| ProSiteProfiles | 171 | 398 | 228 | 32.061 | ||
| ProSiteProfiles | 171 | 212 | 42 | 10.909 | ||
| Pfam | 172 | 202 | 31 | 0.0029 | ||
| SMART | 206 | 245 | 40 | 3.9E-7 | ||
| Pfam | 208 | 244 | 37 | 9.1E-5 | ||
| ProSiteProfiles | 214 | 244 | 31 | 11.043 | ||
| PRINTS | 232 | 246 | 15 | 2.6E-5 | ||
| SMART | 252 | 291 | 40 | 1.8E-5 | ||
| Pfam | 257 | 290 | 34 | 0.0029 | ||
| ProSiteProfiles | 259 | 291 | 33 | 11.778 | ||
| Gene3D | 297 | 395 | 99 | 1.5E-15 | ||
| SMART | 299 | 338 | 40 | 5.2E-6 | ||
| Pfam | 304 | 338 | 35 | 2.1E-5 | ||
| ProSiteProfiles | 306 | 338 | 33 | 11.645 | ||
| PRINTS | 325 | 339 | 15 | 2.6E-5 | ||
| SMART | 344 | 392 | 49 | 0.029 | ||
| Pfam | 346 | 391 | 46 | 7.7E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0183900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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