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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0185100 |
| Transcript ID | LotjaGi1g1v0185100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB-like transcription factor family protein; TAIR: AT1G74840.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q2V9B0|MY1R1_SOLTU Transcription factor MYB1R1; TrEMBL-Plants: tr|A0A1J7IV60|A0A1J7IV60_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0185100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:36201377..36204527) extracted from Lotus japonicus Gifu genome v1.2.
GTGATATAGGAACAGACAGGTACTACTATAAATATAAACCTCCCCACACGCGCCTCTCCAACAAACACTCATCATCCCCT CTGTAAACCTTGAGAAACAAACACCGGAAAATGTCCAACACCGCCGTCTCCGGCGCCGGCGAGTTCATGCTCTTCGGCGT GAGAGTCACCGTCGACTCCATGAGAAAGTGCGTGAGCATGAACAACCTCTCCCAGTACGAGCACCCTCACGACGCCCCTA ACAACAAAGAACACGCCGCCGGCTACGCCTCCGCCGACGAAGCCCCTGCTCCCCTCCCCGTCAAGCTCGCCAACCCCGAC CGCAAGCGAGGTTGCCGATCAACACCTTCTAGAATCAACATGTTTTTATTCGATTGTTAAGAATTAAGATCATTAAATTT CAATGTTTTTTTTTTGTTTTCAATATGATGAATGGTTATGGTGGCAATTGATAGCATTGTTGTTGATTTGTTGCGTTGAT TTTGTATCAGGGGTTCCATGGACGGAGGAAGAACACAAGCTATTCTTGTTGGGATTGCAGAAAGTAGGGAAAGGTGATTG GAGAGGAATTTCAAAGAACTTTGTCAAAACCCGGACGTCAACGCAAGTTGCTAGCCATGCTCAGAAGTACTTTCTCCGCC GCGCTAACCTCACGCGCCGCCGTCGTAGATCTAGCCTCTTTGACATCACCACCGACACTGTAAACCCCTTTGTTGTAGTC TTTTCTGCGCTTCGAATTTAATGTTTTATTTCATAATCTTAACCGGTATTATTGTGGGTCCTCATAATTGTTCTTGCTTG AGATTGTTGAATTGTTTCTTAGTCTTCAAATCAATAGGCAATACTTCACAAGGAAAACAAATAGCATAAGAAATCGAATG TACAATTGCAGTTTGGTTGTGTATCTAGTGTTTCTTAATTAAATTCATTTGGTAATTGAAGAGGAATTCAACTGAATTTG AAACTTAGAATTTGGGTTAGGCTTAAGTATACCCCAAAGGCTAGCTTGGAGGTGATTATTTGCACTACCCTTTATAGCCA ACGCCTGGAGCGTGAAATTTGCTGGACTAAACATCTGCAGGCCAAGGTTGAATATTTGGAGCGTGAAGGTGATACTATTT TTGAATGGTTAGGCCTAACTCTACACTTAAAGTTAGTTAGCTTTGAGGTGAGGATTGTAGTACCCTTTATAAGGACTATA TTTATATTGGCCATAATGTATGACCTTAACACTGAATGAATAGAATCACTTGGTTTCGGTATTTGTTACTGAACTTGGAG AATTGGAGAAATACAACATGGGTATAACTCTAGTACCTTATAGTTTTGTTTTCAGGATTTGGCACCTTGGGTAAGTTGAC TTATCAAGTATTTTATTGGCTGCTACTTATATTTAATAGATTTTGAAACATCTATAGTAGAATTAATGATCAATAAATGC TGATCAACTCGCCTTGAATATTATACCTAAAGGGTGTCATTGCAACTTCAGTAATTTTTTATGATCTACTATTTTTCTGC ATCAGGTCTCTGCAGCCCAAATGGAGGAAGAGCAGATCCAGCATCAAGATAACATGTCCCATTCGTGTCCCATTTACCCT GCAACTGCAACTGAAACCCCTGAAAGTAGCAACCGGAATGGATATCCAATGATGCCCATGTATTCAATGGCAGTTGGTTC TGGAGTCAATTCAGTTCTAGCTAGGAATCAAATGGAGAAACTCACTTTGGGACAAGAAAATGTGGAACAGAATGAGGTAA GCAAGCTAGCCTGTACAATTCCTGCTGTTCCAGATCATAAAGCCTCTTCCAGTGTGTCTGATATCAGTTCCAATACAAGT TCAATTGTTGATCCACCAACACTGTCCCTGGGGCTATCTTTGTCATCTGATCAAAGACAGAAATCACCAAGACATACACC TTTACATGCAGTGCCGTGCTTTAACAATGAAGATAGCATCATAACTGTTGCTTGAGAAAGATGACATAATATATATACGA ATATAATGGTTGTGGTGGAGACTTGAGAGAGATGTTAAAGTTAAGGACAATGGATCAGAGATGTTAGGATACACAATGAG CAAAATCACGGTGGGCAGAAGCATCTCCCCTCAGCTTTTGTGACTGTCCATTGTGATTTTGGCTTCATCGTAATTTTTAA CCTTAGTTTTCCGCCGTAATAGGTGGCCAAATTTGACCCTTATATTCCTCCTACAAAGGTCCTGTCATGTTCTTGTTAGT TTGGTGTATGACATGAAATTCTTTTTTATTGGGAGTTTTATGTTCGTAGTTGCTGAAAATAACGAAGTTTTCTTTTCTTG TTAGTTGCTAATAATGTTGGGTATGGACTATATACCGAATTTTGATTTCTGGAACTTCTTTTGGGAGGACAGGTTTTCTT TTGCTTTTCTTGGTCAATATTTGGTCTGATTCGCTCCTATAATTAATGTTTATGGTTTTTTTTTTATAAGCCAAAAATTG CATTAAGGGAGTACAAGGGAGACTCCAAACCCATAATACAAATACAAAGAACAAGAAAAAGAAACAAGAAACAAGAGCAA AGGCAAGAAACCCAACTAATTCAAACTTAAAGCAAACAGCCAGTTCTTGTTAGTTTGGTGTATGACATGAAATTCTTTTT TATTGGGAGTTTTATGTTCGTAGTTGCTGAAAATAACGAAGTTTTCTTTTCTTGTTAGTTGCTAATAATGTTGGGTATGG ACTATATACCGAATTTTGATTTCTGGAACTTCTTTTGGGAGGACAGGTTTTCTTTTGCTTTTCTTGGTCAATATTTGGTC TGATTCGCTCCTATAATTAATGTTTATGGTTTTTTTTTATAAGCCAAAAATTGCATTAAGGGAGTACAAGGGAGACTCCA AACCCATAATACAAATACAAAGAACAAGAAAAAGAAACAAGAAACAAGAGCAAAGGCAAGAAACCCAACTAATTCAAACT TAAAGCAAACAGCCAACCCCCACCACTAATGACAGCACCAAAAAAAAAACTGTTGCTACCAGAGAACACAAGCAACAAGA AAAGCATTTGTGGCCACAAGAAGAAACAACAATTTCATCACCAAAACCCACACCTATTCCGTGATCCAACTGCCACATAA AACAAGACTCTACCCGCTATATAATCCACCA
CDS sequence (LotjaGi1g1v0185100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCAACACCGCCGTCTCCGGCGCCGGCGAGTTCATGCTCTTCGGCGTGAGAGTCACCGTCGACTCCATGAGAAAGTG CGTGAGCATGAACAACCTCTCCCAGTACGAGCACCCTCACGACGCCCCTAACAACAAAGAACACGCCGCCGGCTACGCCT CCGCCGACGAAGCCCCTGCTCCCCTCCCCGTCAAGCTCGCCAACCCCGACCGCAAGCGAGGGGTTCCATGGACGGAGGAA GAACACAAGCTATTCTTGTTGGGATTGCAGAAAGTAGGGAAAGGTGATTGGAGAGGAATTTCAAAGAACTTTGTCAAAAC CCGGACGTCAACGCAAGTTGCTAGCCATGCTCAGAAGTACTTTCTCCGCCGCGCTAACCTCACGCGCCGCCGTCGTAGAT CTAGCCTCTTTGACATCACCACCGACACTGTCTCTGCAGCCCAAATGGAGGAAGAGCAGATCCAGCATCAAGATAACATG TCCCATTCGTGTCCCATTTACCCTGCAACTGCAACTGAAACCCCTGAAAGTAGCAACCGGAATGGATATCCAATGATGCC CATGTATTCAATGGCAGTTGGTTCTGGAGTCAATTCAGTTCTAGCTAGGAATCAAATGGAGAAACTCACTTTGGGACAAG AAAATGTGGAACAGAATGAGGTAAGCAAGCTAGCCTGTACAATTCCTGCTGTTCCAGATCATAAAGCCTCTTCCAGTGTG TCTGATATCAGTTCCAATACAAGTTCAATTGTTGATCCACCAACACTGTCCCTGGGGCTATCTTTGTCATCTGATCAAAG ACAGAAATCACCAAGACATACACCTTTACATGCAGTGCCGTGCTTTAACAATGAAGATAGCATCATAACTGTTGCTTGA
Protein sequence (LotjaGi1g1v0185100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNTAVSGAGEFMLFGVRVTVDSMRKCVSMNNLSQYEHPHDAPNNKEHAAGYASADEAPAPLPVKLANPDRKRGVPWTEE EHKLFLLGLQKVGKGDWRGISKNFVKTRTSTQVASHAQKYFLRRANLTRRRRRSSLFDITTDTVSAAQMEEEQIQHQDNM SHSCPIYPATATETPESSNRNGYPMMPMYSMAVGSGVNSVLARNQMEKLTLGQENVEQNEVSKLACTIPAVPDHKASSSV SDISSNTSSIVDPPTLSLGLSLSSDQRQKSPRHTPLHAVPCFNNEDSIITVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 292 | 289 | 8.3E-126 | – | |
| PANTHER | 4 | 292 | 289 | 8.3E-126 | – | |
| ProSiteProfiles | 68 | 125 | 58 | 17.266 | ||
| SUPERFAMILY | 71 | 125 | 55 | 1.2E-16 | ||
| TIGRFAM | 72 | 123 | 52 | 8.4E-17 | ||
| SMART | 73 | 123 | 51 | 4.2E-10 | ||
| Gene3D | 75 | 127 | 53 | 1.7E-15 | – | |
| Pfam | 76 | 120 | 45 | 2.2E-11 | ||
| CDD | 76 | 121 | 46 | 1.34499E-9 | ||
| MobiDBLite | 235 | 279 | 45 | - | – | |
| MobiDBLite | 237 | 269 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0185100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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