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LotjaGi1g1v0186100.1

Overview

Field Value
Gene ID LotjaGi1g1v0186100
Transcript ID LotjaGi1g1v0186100.1
Lotus japonicus genome version Gifu v1.2
Description 5-formyltetrahydrofolate cyclo-ligase; TAIR: AT5G13050.1 5-formyltetrahydrofolate cycloligase; Swiss-Prot: sp|Q8L539|5FCL_ARATH 5-formyltetrahydrofolate cyclo-ligase, mitochondrial; TrEMBL-Plants: tr|A0A0B2QHY4|A0A0B2QHY4_GLYSO 5-formyltetrahydrofolate cyclo-ligase; Found in the gene: LotjaGi1g1v0186100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:36404985..36409815) extracted from Lotus japonicus Gifu genome v1.2.

AATTAAGCAAGCATTGTACTTAAGATATGATACCTTGAAAGGGCATCAAATCAAACCCATCCAAGAGGGAGAGTTTGTGA TTTTTTTATTAGTTAATAATAAAATAAAATAAAGTGAGAAAAAGATGAAAACAGAGAGTATGATGACAGGGTGGTACACA AGAGCAGCAACAAAGGGTGTGGCTAGCTTGCAACTATTCCGGCGACCGTGTGGGCAGTTGAAGATGACAACGACGAACAG CAGCAGCAGCAGCAACCACGATGATCTCGACGCCATATTCAAACAGAAACGAATTCTTCGAACTCAGGTCAAGAAAACCC TCAAATCCATCGACCCTTCTCTCAGATCTCAACAAGGTAGGTTCACTTCCTGTTTTCTCATTCTTCAACCATCAATTTTT CAATCCTCTTTAGAAATTCATTTGGGAAATGGAAGTTCACTCTGTCAATTTTCTGTTTTTTCAGATAATGCTATTCAAGA CATCATTCTGGGAGCTCCGTGGTTCAAATCTAGTGCTAGGTTATGTGCATACATTAGCTGCAGCGCTTTACGCGAAGTCG ATACGTCGAAACTATTGTCGGAAATTCTGCAACCTTCCGCCGCCACTGGTATGTATGCCTTCTCTTATAATCTTCAAACA GTGGATTTTGTTTATGATAAATTAGATTTTAGAACAATAACTTTATTACTACTTTATGGTTTGAAGATAAGATGATTGAG TGTTGTCTTGGGCAGTGTTGTTAATCGCGGATCGCAGAAAATAACGGAAAGCCAAAAATCCGCTATTTCAAACCGTCAAA GTGTGAAATAGCGGCAGATAGCAGAGTAGGCGTGAGCCCTCAGAGCGCTACACTATGCTATATCGCTGCTATAACCACTA TTTGACAATGATCTTGAGTTATATGGATGTGTGGAGAAGAGTTGTAGAAGAACCAATAAGGGTAGATCATATGGAGGATA GTTTTATAGTTTAAGGGGTGGGGTTAGTTGAAGGAAATTTGTAGTCTAACTCTAAATTAATAAGACATGGATGAAACTAG GTCATAAAAAATGGGGCAGTTGACGCATTGAAGAGACATTTTTTTCATAATAGATTAGTGTTTAAATATTGTATTTGCCC CTAAAAAATTTATTCCGCCTTTTTCAATTAGCCATTGTAATTTTCCTGAATGTGATAAAATTTCGCCCCTTTACCCATTT TTCTGGTTCTGTCTTTGAATAAGGATTTGGAATTAAATATTTTCAATCTGTCATTAAACATGATTAATGATAGGATATTA AGGAACTTTTTCGTACCAAACATTCCTGAATAAGAGTTTTTGTTTTTTTAATACCAGATATGCTTTGTATACATTTTTCT TTTCCTTTTACCTATTCTTTACATTTTCTTAGAATCCTGCAGCAGTTTTTAACCCTTGCCTCCAAAATATAATCTTCTAA TTCTACTGGAGTATCTATATATTTTCTTGATCGAGACAAGATGAACATATGCAGGAGGAAAAAAACTGTACGTACCACAG GTGGAGGATAAAAATAGTCACATGCGTATGCTCAACATATCGCGTATTGATGATCTTGTGGCAAACTCAATGGACATTTT AGAACCAGCTCCAGTTGATGCTGATGGGAATGCACGAGAAGATGGTACCTGCTTCTTTTTCTTTACTGGCTTCCTTCTTT TTATTTACTGCCAAATTCTCTTGTCTCACTGCTTGAACATTTTAAACTGTCTCAGATATAGAAAATTGCAAAAACAAGTT GCTTAACTTCCGAATCTAAATTTGGTTCGTTTGCAAAATGCTACTATTGTGAAGTCAATCAATAACAGTACATGAATCTA AAATTTTGTCAAGTTTTTTAGTTTTGCTTAGTGTCATTTCAACAGTCTGCTGTTCCTATGGGCATCAAGCAGTTTCAAGA CACGATCAGCTTGTCTACATCTTAGATGCCATTAGTGTTTTTGTAATTCACATATTTTAATCAGGGTTTCTTCAGCTAAA AGATTCGAGTTGTTTTTATTTCAAAGAGAAAAAAGAAAAAGTGCATTAACTTTTATGAAGCTTCTTCCTCAGGACCACAT ACAAATTATGTGCACTCTTCTCCCTGTCTCAACTATTTTTGTGCATTTAATTATATTGTTCTGATTCTTGTAGGTTTGAC TTCCATCTAATGTATTTTCTAATTATCCTGAATTCCTGATTGGCCAATATCAACAACCTTCTGATTTGGTGCAGTTATGC AGGCGGATGACCCAGTCGATTTATTGCTTTTGCCTGGTAAATTTCTTGTTCTTATGGAATCATAAATATTTGCTTGAATA CAGCTAATCATATGCTATTATTTCTCTTTCGTAGGGCTGGCATTTGACAGAACTGGAAGACGTTTAGGCCGGGGCGGAGG GTATGTTTTTATATCTATTTATTCTGTCAAAATAAGTGAAATCTCTCTCTAATATTGTATAAAGCCTCAATTGTATAGGA ATATCTGAGCAGAATTAATAATTCTGGCCTGTCTTATAGTACTAACCAGTGCAAAACTGTCATGGTCGTTTGAATAGTGA CAATTACACAAACCCATAACCTTGATTTTTGGCATTTCTCTTCTTATTTCCTGAATTTTATTATCACAAAGCTATATAAA TTTTAGGCCAAGGTTTCTTAAAAGTTAAAATCCCCCTTTCCACAGTTACTATGATACCTTCCTCGAGAGCTACCAACACC TTGCAAAGACACGGAATTGGAAGCAGCCCTTGCTCGGTATGCATTTCTTCCATGTAGGATTATATAATTATGGTGGAATC AAACTTACAAGATTTATTCATCATCAACCAATTTGGCTTTGGCTTTGTATTTGCAGTTGCACTGTCATATTCCCAACAAA TACTGGATGAAGGAGTAATACCAATGACATCGTCCGATGTTCCGGTTGATGCTCTTGTAACTCCAGCTGGTGTGATTCCC ATCAGCACAGAAGCCTTCGATAGGTGTCAATGATCGTATCACTTGTGGTATTTGATACTAAGCCCCGTAGAACACTGGTT AAGAATTAATTAATATCTTGAGAATCTAAAAAGTTTGTAATATTTTCTTCTTTAAGCAATCAAGAGTATTTATTTACTCA ATAGTGGTTGGTTGCTATGGAAAGTAGACTGGGAGTCCAAGCAAACTTTACCTGCAATGTTTGGAGTCGCCACTCTTGGG AGAGCTTTACCTAAGTACCACCCCTTGTCCAAGGATTAATCCCATTGCAATGTCTATGGGGATTCCCTGTTGGAGACCCA CAAATCAGTAATGTTTATGTATTGAATAATATTGTTAGTGGAGATATTGATTGCTTCTTCAACATTGTCCTGTGAGCATT GGTTAACAGCACCCTTCATTTTTTCCTATTTTGAATTTGCTTTAGTTTAATTGCACATTTGCTACCTGATCTTTCACCTT TGTGCAATTTCCCTCCCCAATATTTAAAACGAGCAATTTTAGTCCCACTTGTTTCTTACGTGAGGGATTTTAGTCCTTCC GTTAATTTTCCATTAGAAAGCTAACGGAACTCGTTGACGTGGACTCATTAATTGATGTGGCAGGCCATATCAGCTTGCCA CTTGGATAAATAATTAATAAAACTTTGAATTTCACAAAAAAATTCTGAAAATTTTCTTTTAAAACCCACAACATATTAAA ACATTAAAACAGTCTTTAAAAAATATTAAAAAAAATAAAAAAAACACCATGAAACATGGAGAGGAAGACATCGTATCTGA ACCAGAACCTTCTCCAAAATTGCTACCTTCTCCATCATAGATCTGAACCAGGACCTTCTCCAAAACCACCATGGCATCTC TCTTGCATCACTCCCACTCGATTTCAACTTGTCTCCCTCATCGACCTTTCGTTTCTCTCATGATTTGGCTGAGAACCATA AACATCCTTGCACCCAACCCCTTAATCTTCTTTTAATTAGCGAGATTTTGACCGATTGAGAGAAAGAGAAAATGGGGTTG GGCGGAGGAACAACTGTTTAGCGCGGTGAAGGAGAAGGTCACGGTTTGCGATGGCGGAGAATGACTTGGGGTTTTGTGGT GGTGCTTTGAGGTCAGTTTTCATGGTTGGGTTGACTGCGGAGGGGCAGTGGCTTGACGCGAAAGCTATGGTGGAGCACGA AATTTCTTATGGTCGCAGGAAGAGAGAGGTTGGGTAATGCGGGTGTGTAGTGGTGGCTACTGAAAGTTGAAGGTTTTCAT TGGTTGAAGCTTTCTGGCCCGGAAGAAAGTATATGAAAGTGGAAGAGACTGATAAGGGTTGAGATTAGGTTTTGGGGAAG TTCTCAAAGGTTATTTGATGGTTTAATTTGGTGATTTCCATTGATGTTCTTTGAAGCTGTTCTTGTTCCTCGTCCTTTTC TAGGTAAATTGGTTTGGGAATTTTCTTGGAGTTGTCGGGTTAAGAAGGGAAGAAGATGAGGATTTAAGGTGGTTTCTTGT AGGTTGGGAGTGGTGGTGAGAAGGAAGAAGAAGATGGAGGGGTTTTTGGTTCATTCAATCTGATTTGGGATTAGGTTAAA ATCTCATGCATGAATTCATTTTTGTGTTGAAGCTTTGAAGGTTTTGTTGTGTTTGTGTTAAAGATGACGCTGGATGAACT CATGCAATGTTTTAATTTTTTTTGCTTACCTTGTAAATTATGTGAATGAATGTCTATAAACATGTTTTCGTTGAATGATT ATTGGATTGAACGAACACTAACTATTACTCTTTGTGTTAAAATTAGGGATTTGGGCTTAACAATGAAGGATTGTGTTGAA GAACTGAATCCCAGGTGACTCTGGGAGTGCT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0186100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAAACAGAGAGTATGATGACAGGGTGGTACACAAGAGCAGCAACAAAGGGTGTGGCTAGCTTGCAACTATTCCGGCG ACCGTGTGGGCAGTTGAAGATGACAACGACGAACAGCAGCAGCAGCAGCAACCACGATGATCTCGACGCCATATTCAAAC AGAAACGAATTCTTCGAACTCAGGTCAAGAAAACCCTCAAATCCATCGACCCTTCTCTCAGATCTCAACAAGATAATGCT ATTCAAGACATCATTCTGGGAGCTCCGTGGTTCAAATCTAGTGCTAGGTTATGTGCATACATTAGCTGCAGCGCTTTACG CGAAGTCGATACGTCGAAACTATTGTCGGAAATTCTGCAACCTTCCGCCGCCACTGGAGGAAAAAAACTGTACGTACCAC AGGTGGAGGATAAAAATAGTCACATGCGTATGCTCAACATATCGCGTATTGATGATCTTGTGGCAAACTCAATGGACATT TTAGAACCAGCTCCAGTTGATGCTGATGGGAATGCACGAGAAGATGTTATGCAGGCGGATGACCCAGTCGATTTATTGCT TTTGCCTGGGCTGGCATTTGACAGAACTGGAAGACGTTTAGGCCGGGGCGGAGGTTACTATGATACCTTCCTCGAGAGCT ACCAACACCTTGCAAAGACACGGAATTGGAAGCAGCCCTTGCTCGTTGCACTGTCATATTCCCAACAAATACTGGATGAA GGAGTAATACCAATGACATCGTCCGATGTTCCGGTTGATGCTCTTGTAACTCCAGCTGGTGTGATTCCCATCAGCACAGA AGCCTTCGATAGGTGTCAATGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0186100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKTESMMTGWYTRAATKGVASLQLFRRPCGQLKMTTTNSSSSSNHDDLDAIFKQKRILRTQVKKTLKSIDPSLRSQQDNA IQDIILGAPWFKSSARLCAYISCSALREVDTSKLLSEILQPSAATGGKKLYVPQVEDKNSHMRMLNISRIDDLVANSMDI LEPAPVDADGNAREDVMQADDPVDLLLLPGLAFDRTGRRLGRGGGYYDTFLESYQHLAKTRNWKQPLLVALSYSQQILDE GVIPMTSSDVPVDALVTPAGVIPISTEAFDRCQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23407:SF8
32 269 238 3.6E-137 –
PANTHER
PTHR23407
32 269 238 3.6E-137 –
Gene3D
G3DSA:3.40.50.10420
48 261 214 9.8E-55
IPR024185
SUPERFAMILY
SSF100950
54 264 211 1.34E-38
IPR037171
Pfam
PF01812
55 258 204 4.4E-34
IPR002698
TIGRFAM
TIGR02727
55 258 204 1.4E-30
IPR002698

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0186100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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