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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0194100 |
| Transcript ID | LotjaGi1g1v0194100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein interaction domain protein; TAIR: AT3G16210.1 F-box family protein; Swiss-Prot: sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210; TrEMBL-Plants: tr|A0A1J7G5U0|A0A1J7G5U0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0194100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:38415550..38420120) extracted from Lotus japonicus Gifu genome v1.2.
CGGGCTTTCTGTTTAGTTTTTCAACTGACCAAACCGATGTTTTCAGCCTGAAATCGACCAAAATCATCGAGTGGATAATC CTAGTGTTTTCAATCCGAGAGCAAGGAATTGGTGGCCCACTTAAAAAAAAAATTTAAAAGCAGAAAAAACAGCATAATCA GTTGTTTTAATTTTTTCCGATGGTCGCTGCATCTTCTTCAGTCATCTAAGCACTCGGTGCAGCCACAATCACAAATGGCG TCAGGTGGCGACACCACCGACGGCGGAACCCTAACACCACCACCGTCACTCCCTTCCTCTTCCAATCCTCCCGGCAACTC ACTCCCGGCGCCGCCGCTTCCAACCCTTGCATCCGAGCTCGTGGAAGAAATCCTATGTAGGGTTCCGGTGAAGTCTCTTT TGCGATTCCGGTGCGTCTGCAAGTCCTGGAATTCCCTGATTTCTGATCCCAAATTCGCCAGAAAGCACCGTCGCGAGTAC AACCGCTACAACTTCATGATAGATACCGAGAACCATCTCAGCTCTTATCCAGTCGGATATGCCTTTGATTCCTACGCAGC CACGCGGTTAGAGTACCCTCCCAACTATACTGTCCACTCTTCTGTTATCTTTAGCTCTTGTGATGGCATTCTCTGTTCGT ACTGCTTCGGAAGCCGTATCGTTCAGGCATGGAACCCTTGGACTAGGACCTTTGTGAAATCGCCGCCATTGGAAAATATT AAGTCAGGGTATTCTGTAATTGAGACGTCGTTAGGGTTCGGTTACGATCGTCTCACTGAAAGTTATAAGGCGGTTAAGAT GATTTTTGACGCTGATCATGGTCTCAAAACTCGAGTGATGATTCATACGTTTGGTACCAGTTTTTGGAGAAGGATGGAGG TGGATTTTTGCCCCGTTGATAAAACAGGAACATTTGCTTATGGAACAATTTACTGGATAGCTTCTGTGGTTTGGGATTCG AAGAAGCGGTTTATTGTTTGTCTTGATGTGGGGAAGGAGTCCTTTCAGGAACTTCGGCTGCCTAAATTAGATGACCTAAA CCTCACATTGGGAGTGTTGCGAGATTGCTTGTGCGTTGTTTCTCATGAGCAGTTGTTTTGGGATATTTGGGTCATTAAGG AGCATGGAAAGTGTTGGACTAAATTATTCAGTATTCCTGAGGATTGTAGCTGTTTTCCGCTTAACCAGCCTCATTATATT TCTGAGGATAAGGAAGAATTACTACCACTGTCTTCCTTTCGGGGTTTAGTTGTTTATAGGCGTGCAACTCCTACGGACAA AGTTACTCGGATTTTTTATATTGAAAACATCAAAGCTTGGATTCTCCCAGAGATGTCCTACTCCTATGAGCCAGTTGTCT ACACAGAGAGTTTGATATCACCCTGTCCTCAATATTAGGAGGTAGATTTTCTGATATTCCTTTGGATGGATCTCTATTAA TTAATATTAGATGTAATATCCATCTTCTAGTTTAAAGTACTAAGGTTTCATAGTAGTTTTATGTAAGGCTTCTTTGGAGG TTAGGCCAGGAACTCTTTTAAAAGCTTATCTACTAGAACTACTTTTTAATTAAAAGTAATGTTTGGATAAATGTAATTGA AGAACTTTTAACTTTTGAAACCAACTTATTAGAAAGCTAATCCCAACCGCTTCTCACCTTTGGTTATTTTTTCGGGAAAC TGATGCTAAATTATCAGGTTGACAAAACTACCACTGTAAACCCTAGCAGTTTCAATCCATTGTTTTCTGTGTTATCATTT TCTGTTTGCATCACTGTTGTCCAGTTCATTGGTTGTGTCTTCGTTGCTGGAGGTTATGTATAGTCGTCGTCAGAATCCCC TTAAATGTCTTCACCATTTGTGTGCATTCTTCTGATCTTATCCTTCCACTTCTGCTGCTACTCTGCATCATCTATGGTCA ACATATTCAAGAATTTGTGATTCCTTTTTCAGATTTATTTTTTCTACTCATGTTGCTATTCTTGTTTGAGAAGCTTAAAT TGAAGGTATAGATTTGTTCCTTTCTTGTATTCAAATATACTTTTTCCGCTATTTTTTTGTTTTGTTTATAATTCTGATTC TGATTGGCGGTGATGGCTCATTTGGGTTTGTGATTAGCTTCGTTTTCTATTTATTCTGTTTATACATTTTCACTTTCATC ATAATAATGTGATTATTTAAATTATTGGTGCTTTTGGGCCAAATGTGGCACCAATGTTTCTGAATTCCAATCAATTTGAT TTGCATGTGTTTCTTGCATTGTACTACTTAAGGCATCATACAGAGTTTTTGAAAATAATCAAGTTATTATGCTAGAATGT GCTGGGGGAGCTTGTTTTGTGAGTTCATCTGAGGCATTCATGCTCTAGTTTTTGTTATCGGCTTAAAGTATTATTCGACC ATTTTAATTGAGTTTTGTATTGTGTAAGAACTTGCTAAAACCAAGGGATGTGGGAAGTCTCGTGTTCTTATATCCTTTCC ATTTCCAGTCTTGGGGCTCTCTTAAGGGTGTGCAAGCTTGCTTAACTTGTGGCTTTTGAGGGCCTCACAAAGTCGAGCTG GGGGTAAAACTTATCAATGACTACAGTAAGTAATTCAGGGAGCTGAATTCTAGTTTAGATTCAGAACAAAGTTTAACGGA TCTGGTTTAGGTGGCTGTTTATCCGGTATTCTCTTGCTTAGCTCACCGAACCTATATCACATGCCTTGTTCCTGGTGTCA AGATTTCATAAGAATGTATTTTTGTTCTGAAATTTAAGAATGTTACACTTCCCAGTTCCCACTCACACAAACACATTCAC AGGACCTCCTAGCCTTATGTTTATTATATTCCATAGTATCTACTCTTTATAATGTCACAATTTGGTTATCCTTTTCCTTG AAATCTCCATTTTGATTGTTCAAATTACTGTCTATATGTATGGGGGAAGCCTAGAAGGAACTGGTCAGGAATGGATCTGT GCTTGAGTTTGCTTTGGATTTACATATGAATGTTATTGAACAGTAATTCTTTCGCACGATCCAGTTCCAGAAGGGCCTAT CTTCTCTAGTTATGATAATCTTTGAAGATGAGGTTTGCAAGTTAATTTTGTTTGTCTTGCTTCCAAATTTTAGAGTGTAT TCTCCATATTAGTACAAGAGATTCCTAAAATGTTGAAAGACTCACCATCTTTAAAATGTTGCTTTTCCAAACCCAGAAAC TAGAGGGTCTATGATTATATCATTCGTATTTCCTTTCTTATGCCTAGATCAAACGTATTCTCCACAAGAGGCAATATGAA GTAACACACTGCATAACTCTGCCTCTGATTATTTAACACACTGCATACCCAGTCTTGAACAAGGGACATCTGGTTAAGCT GGTTGGTTCAACTCCTCACCAACTGATCAACATATTCAGTTGTATTTGGACTTTGGATTACCTTGATGAAATGCTATTAT TTATCTAACCATTGTGTTATTCCCATCTATATTGATATAAAAGCTAAAAAAAAATATGCTTTTAAGTTTTTATATAGAAT AGCATTGGAATGTGAAGTATTGGGCCTAAACAATCATCTTTATCCTTTTACCTTCCATTGTTTAGCTAAACCTATACAAT TGTGTTTCTGAGGAAAAACAAGACATAAAGGATCACTGGCTTTCAGGTTGTTTATTTAAGCTACTCTGTTTTTCTTGTTT GTAGGGTTTCCTTTCTCTGCCACACTATGTGATATAGTAATTATTAATGGTTATATAAAATTGCTACACAGCTGGAATTA TTAATGGTTATATAAAATTGCTACACAGCTGGAAATTATGGTTGGGGAATCAGGAGCAAGAACAATTGGCAAAAGAACAA ACTCGCATTGCGCTGAAAAGCAAGACTTGGAAGAGAAACGTTACATCTGGATGATCATGTGAGAAAACTATTTAGGTTCT TATTGGGAGTGGAAAACTGATTCCATGCCATGCCTTTTTTTTATACTTTTACTTTTAAGTTTAGTGTCCTATGTTTAAAA TATTTTATGGGTTACTCCACAAATGCATTTAAAAGAAAATTGCTTGGCATTGTAGGAGACTAAGACATGTGTGAAAACGT TTGATCTTAACTGATCTTCGAGGTCTTTTTTATTTATTATTGAAGGGCAATGTTCATTGTTGAATGTTGAGGTAGGGTTT GTGGGCATCTCATGTTTTGTGCGCTATATTTGGCTTGTAATTTCTATTTGCGGTTCTTTTTTCCCCATTACTTATGAAGT TCTATTTAATTTAATGTAGTTAGTTTGGCTTCTTTGAGAGCTTTGCTCATATGATTCATGTAATGAGGGAAACAAAGACA ACACCCGTGGATAAAAAATTGGAAAGACTAGATTTTAAGATCGGTTAGAAAAAGACGTTACTACTTACAGTCATTGCCTA GTGGCATGAGTGAACTGCCCATCCATGTGAGCACCTTTGATGCCCATCTCTTCCTTAAGTTTGTAAAGGTATCTCTCACA TGATATAAATTTGTCTAAGTGAATCAAATAGTTTTTTCTTTTTGCTTTTATGCTCTTCAACAATACTGGTTTTGCATCAT GGATGTTCACC
CDS sequence (LotjaGi1g1v0194100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCAGGTGGCGACACCACCGACGGCGGAACCCTAACACCACCACCGTCACTCCCTTCCTCTTCCAATCCTCCCGG CAACTCACTCCCGGCGCCGCCGCTTCCAACCCTTGCATCCGAGCTCGTGGAAGAAATCCTATGTAGGGTTCCGGTGAAGT CTCTTTTGCGATTCCGGTGCGTCTGCAAGTCCTGGAATTCCCTGATTTCTGATCCCAAATTCGCCAGAAAGCACCGTCGC GAGTACAACCGCTACAACTTCATGATAGATACCGAGAACCATCTCAGCTCTTATCCAGTCGGATATGCCTTTGATTCCTA CGCAGCCACGCGGTTAGAGTACCCTCCCAACTATACTGTCCACTCTTCTGTTATCTTTAGCTCTTGTGATGGCATTCTCT GTTCGTACTGCTTCGGAAGCCGTATCGTTCAGGCATGGAACCCTTGGACTAGGACCTTTGTGAAATCGCCGCCATTGGAA AATATTAAGTCAGGGTATTCTGTAATTGAGACGTCGTTAGGGTTCGGTTACGATCGTCTCACTGAAAGTTATAAGGCGGT TAAGATGATTTTTGACGCTGATCATGGTCTCAAAACTCGAGTGATGATTCATACGTTTGGTACCAGTTTTTGGAGAAGGA TGGAGGTGGATTTTTGCCCCGTTGATAAAACAGGAACATTTGCTTATGGAACAATTTACTGGATAGCTTCTGTGGTTTGG GATTCGAAGAAGCGGTTTATTGTTTGTCTTGATGTGGGGAAGGAGTCCTTTCAGGAACTTCGGCTGCCTAAATTAGATGA CCTAAACCTCACATTGGGAGTGTTGCGAGATTGCTTGTGCGTTGTTTCTCATGAGCAGTTGTTTTGGGATATTTGGGTCA TTAAGGAGCATGGAAAGTGTTGGACTAAATTATTCAGTATTCCTGAGGATTGTAGCTGTTTTCCGCTTAACCAGCCTCAT TATATTTCTGAGGATAAGGAAGAATTACTACCACTGTCTTCCTTTCGGGGTTTAGTTGTTTATAGGCGTGCAACTCCTAC GGACAAAGTTACTCGGATTTTTTATATTGAAAACATCAAAGCTTGGATTCTCCCAGAGATGTCCTACTCCTATGAGCCAG TTGTCTACACAGAGAGTTTGATATCACCCTGTCCTCAATATTAG
Protein sequence (LotjaGi1g1v0194100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASGGDTTDGGTLTPPPSLPSSSNPPGNSLPAPPLPTLASELVEEILCRVPVKSLLRFRCVCKSWNSLISDPKFARKHRR EYNRYNFMIDTENHLSSYPVGYAFDSYAATRLEYPPNYTVHSSVIFSSCDGILCSYCFGSRIVQAWNPWTRTFVKSPPLE NIKSGYSVIETSLGFGYDRLTESYKAVKMIFDADHGLKTRVMIHTFGTSFWRRMEVDFCPVDKTGTFAYGTIYWIASVVW DSKKRFIVCLDVGKESFQELRLPKLDDLNLTLGVLRDCLCVVSHEQLFWDIWVIKEHGKCWTKLFSIPEDCSCFPLNQPH YISEDKEELLPLSSFRGLVVYRRATPTDKVTRIFYIENIKAWILPEMSYSYEPVVYTESLISPCPQY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 17 | 17 | - | – | |
| MobiDBLite | 1 | 33 | 33 | - | – | |
| MobiDBLite | 18 | 33 | 16 | - | – | |
| Gene3D | 28 | 161 | 134 | 1.9E-9 | – | |
| SUPERFAMILY | 29 | 84 | 56 | 1.96E-15 | ||
| ProSiteProfiles | 32 | 78 | 47 | 9.365 | ||
| Pfam | 35 | 78 | 44 | 3.1E-11 | ||
| PANTHER | 36 | 349 | 314 | 3.6E-46 | – | |
| PANTHER | 36 | 349 | 314 | 3.6E-46 | – | |
| SMART | 38 | 78 | 41 | 4.8E-9 | ||
| TIGRFAM | 127 | 333 | 207 | 3.3E-29 | ||
| Pfam | 230 | 322 | 93 | 5.0E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0194100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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