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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0195400 |
| Transcript ID | LotjaGi1g1v0195400.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 50S ribosomal protein L14; TAIR: AT5G46160.2 Ribosomal protein L14p/L23e family protein; Swiss-Prot: sp|Q93Z17|HLP_ARATH 50S ribosomal protein HLP, mitochondrial; TrEMBL-Plants: tr|I3SPI5|I3SPI5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0195400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:38718491..38724329) extracted from Lotus japonicus Gifu genome v1.2.
GCCTAATTGAAATTGACAAGGTCAGGGGCGCCTCCCTAAAAAAAATAAAATTCTACTTACCCCTTGTAATGTTTTTTTTT TGAACCCCCTGAGCTTTTATATTTGCACCCAGACCCCAATTACTTCTCTCTCTCACACTCACATACTCTGATACTCATGA ATCACGACTCACGCACGCCAGCCCTCACCCTCTCGCACTCTCACCACTAGGTCTGGCCGTCATCACCGACCACCACCACT GGACCAGTCCAGTTCACCTTTCTCTTCTCAAGTTTAATTTTCCCAGGTAACCATGAATATGATTTTCCCTAAATCTGGAA TCCCTAATTCTAAATTCTAAAATTGTCATACTCACTCAGTCACAGAGTCTCCACCTTGGGTTGTAGTTCTAAATCCTAAT TCCTACTCCTTCAAACCTCGCCTCGCCTTCCCAATCCCTTTGCATCGGTTTTGTATGCATATGCAAGTAGATGCATGATT GATTGTTTGCCAATTTGTTTATCATCAATTTTTTTTATCATGGTTAAATTCAATTGAGATACGTTGTTGTTGTGTTAGGT TTGGATTTCTTTGTCTGTCAATTGTCATGGTTAAACAGTAAACACTAATCCTCGAATCTGTCTGTGATGGCTCTGCATAC TGGTTTTTCTGATTTTTTGTGTTGTGTTCATGATTCATGGGCAAGGAGGGTGAGTGGGGTGATCTTTCGTGAGGCTCATT GGTTGGTGTTAGCACATTTTGCTTCTGTGCGTTTTTTAAGGAGTAGGGGACCTATCAAGTCTTACTGCTACCTTTTCTAA CTCTGTTCTTTATCTTTTTTGCTCTACTGGTTTTGGAGTGACCAAAACACTCCCATACTTATTAATATACTTATACTTTG TTGATCAAAAAAAAAATTGTGATGGTTAAATTCAATTGTTTCTTTGGATATCTCTAGAGTAGAGTTTAATTGTTGAATAC TACTATTCTTATAGTTATAGACTTATAGTTATGTTATGTTTCTTGATTAAGCTAAGTTTTTTTCCCTTTTTCTTTAGATT AAATGCCAAGTACAATTCAAATGTAGCATGTTGTTCAATAACGCCTGGGGCCAAACCCACACGTATCAACGTATGATGAT CCTTTACATATCAACCTAGTAATTCCATGATCCAAATGTACTTGTTTAGATTCTTTACTTTCTGAATGAATAGAAGCAGG CAAGACCAGTGCTTTGATAAAAATAATGCTGAATTTCTGATACATCTCTCTGTACTTTCTAAAGGCTTTCTTCTAAATGT TCAATAGCTGCAAACTAACATAAAATTTATGTTCATGGACATTGAAGCACCCCCTCTAGAGTAGAGTTTAATCAGCATTT ACCTAGGTATAGTTATAGACTTATAGTTATGTTTCTTGAAATTGATTCTATAATTTTAGGTACTTGTTTTAAATTTATTT TGCTGTTTTTCATCCTTTTTGATCCTCTTTCTTTTGTTAAAACATAGTAGTGGTGCCCTGTTTTTACTGATTATGGTATG TTTTTAATTTTAGAAACGTCATGGACAAATTTTTAGTAAAACAAATTTGAACCCCCTGACCCTGGGGTCCTGGATCCGCC ACTGGACAAGGTTGTGAAGTTTTGAGTTTTGACAGGTTACTGGTTTCGCTTCCACTTAGCGTCACCTTGGCGTGTAACCT TGTGTGTGTATTTTAGCTTGATAGAGATATTGCTAGAGTCATGTCTGTTACGCTTAATTAGGAGAAATGGGGTTTGTCTG TGTAGTGCTTATGAATCAATATCTGTCTTATTGGTAGAAAAGTTTATCGCAAGCTTGTTTTCTTGGGTTATGGTCTTCAG GGATGTTTGGTCCAAGTCAATGCAAGTGTTTTTATTCTGAAGTTCGAAGCCATTTCATCGTCGTGGGTTGGATGGGATAG AGTTGTTTGCTAGACTTCAATGTGGGTGTAGCCAATTGAGATTTTCTTTTTTATTTAATGACTCACTGATTCAACAATTT ACGCAATGTCCTTGTCAAGGCCGATATGGGTTTAATAAGCACCGTGCATATAAAATGAATGATCGTGTAAAAGAAAATTA CAATTATCTAAATTTAAATCTGACTCTTTCTATTTTGTCATATAACTCGATTTGTGTCAGAGTATGTAGTGGATTTGAGA CGAACTGGGCTTGGGAATGATTATTAGAAATCATAACCTGAGCTGAGCTAATCTTTGATTCTCTCTTTGCTTTTCTCTTG TCTCACTCTCAGCTGCCACTCGATCACACCTACTATCCTCTCTGAGCTAATCTTTGATTCTAATCTTTGCTTTTCTCTCT TTGCTAGGGAATAAAAAAGACTGCAACTTCCGAAGATGGCTGCAAGTTTTGCTTCCAGATGTTCTCGTGGTATGTGCTTG CTTTTTGTGTTTCATTTTAACAGCCCAATTTCTTCTTTGAAATTGGAACTATGTGTCCAAAACTTGATAATGTATCAATA TTTATAGTTCAGTGAAACTTTTAACTTTAAGCTCATTTTTGTACAACTATGTTGTCTTGTAGGAGTTTTTTTTTTTAATA TATTGTGACTCATTGCCTGGAAGTTAAATGTAGAACTCCTTTGGCATGTTAAATTGGGGGGAGTTTTATTTCAGTTTTGG TGTTTCTGGTTAGCTCCATATCTAATAGGTGGTTTCTGAAAAGCTGTGTCTTACTGTCTTTGATGCAACCACTAATTTTA TTGCGCTGGTACAATTGAATTGCCACTATAGCAATTTTTTAAACATAAATCAAACTAAGCTGAGGAAAGTCTTTCATATT TGAAGGAACGAGCTAGTCTTGTTTTTCGTCCAATTCTGAATTCTTTTGAAGGATTGTTAGCACAAGTTGTTTTAGTTTAG ATGTCGGGGGATCACCTTCAATGTGCTTTTATTACAATTATTAGAGGATCAAGCTAAGAAGGAAGTTGGTTAGTTATTAG TTCCGAGCAGTTAGTTATTAGTTTCTACGTTCTGTTAATTCTTATTTGTTCGTTAGTTAGTTAGCTCAGCTTGGGTAGCT ATCTTCTGTAGCCTAACTCACATTAGCCTAGATTAATACGGCCTCCTCTATATGTGAATGAGGCTAGATCTGTACAATCC AACAGTCAACGAAGTTAGCATTTCATTCTCTGTTAGCTTTGGGTATAACAATAACTTTCTCCCGGAGACTGAATTTCCTT CACACCGATAGACATGAGGTGCGGTGGTTGTCCTGCATTCCTGCTGCTTTTTGTTGCCATCCTTTTTCTGTAGCACAGGA AGATTCATGTGTAGGGTTCTTCAGCATCACAGCCACACAATGTATCCCATGTTTGCTAGCCCTGTTCCCCATAAAGTATA ATTCTTGGACCACAAAACTAAAGAATCAAGGCCGATATTCCAATTTAATAAACTGTCACTAGTAATCAAAGAAATGCTCT TAATTCCAAGTACATAATACTAGCTTAAGAACCCTACAAAAATCAAGTTCATTTCATAAGTGCACGTTGCATATTCCTTC ACAAGTTGAAGCAGTAAATTTTGGGGAAAAACTCAACAAGGATGAAACTTGCAGGATAATTCAGCTTCTTCATGTTGCTT GAAACTTTTAAATAAAATTATTATTTTCTTATTTGTGGGCTTGTTAGCATGTTTCTTATAGTACTATGGTATTAACATAT TCTCATATTAAAGGCGTATTGTTTATACTATTGAAAGCATGGGGATACAGATATATACAGATATCTCAGCTTTCTTAGAG CAACTGACGATGAAACCAGTTTTTGGTACTAATAAATATGTTAAGGTTAAGCTTCACTTGAAGTTGTGCTCTTTTAGAAT GTTGTTTTTTTTGCTGTAGTGTTTTTCCAGTATTTCAAGTTTCCTTGTGTGCTTTGCATATGTTTTTTTTAAGAATGCTT TAACAACTGAGATTTTAAGGAATTGGTTGCACTTTAGAGTTGATGTATTTCCTTTCTTTCTCCTGTACTGTAGTATCATT TGTTGCAGTGGTAGAACTCAGGATCCCTTTTCTTTCATAATGAATTGTTGATTCAAAAAAAAGGTACAAAGGGCTTAGGA AAGCGTGCAATTATTAATCATGAAACTAATTTCAAAATGAAGATGGCAGCACTCTCTTCCAATGGCCTTCATAATGATAG GAACTGGATATGGTTGCTGAATAATTGGAGAGACTCAGCCACTCTCCCTATGTTCCAAACCCCAAATGACTCAATAGATA CCAATTCTCACCCTAAACTCTCTATTTATCGGCAGCATGCCTCACACTAACCCACCCACTAATTACCCCACCCTCACTAA TTGAGTGTGTCTAACACATAACTTTAGGTGGTGATGTGCAAACAGCTCATGTACTTCAGGCGTGCTTAAGTCTCATTTGT ACTTGATGATTTTATTTCTTAGAAACATTGGGGACAGGCAAAGTGTTATGCTTGCAATGATCTTTTTTGTTCAACCACTG CATTTTGTAACCAGCCTGAAATTTCATTCAGCTCCACAACTCTATTTTGATATATTTAAGCCTGCGTTCATGCCACTTGT ACACCCTTTCCAGTAATTATCGTTTATAATTTAATGGTGAACTGTATTTTATGTTGATAAGATGATATTCTCATGTTCAA CTTACTACTATTTGTTTCATGTGTTTAAAAATTAAAAACCAAACTAGTGGGCCGTTCTCTGTTCAGCGGATTAAGCAACA GTTCCCTTGGTTCAGCACATGAGATGACACACAACAATTATTTTTCTCAGGTCAGTTTATGAATTAACTGCAAATTCATT TTTGGATTATTAACATTGTTACAGATCTTCTTTAACACTTATGTTTGCCCAACATTGTATTGGTAAACATAGGTTTTAGA TAATAGCAGTAACATTTCCGTGTTCTGCAAAGATATGCATGTGCTTCAATGAATCTCATCCATTCTTTCACTCTGGTATG GTTCCTTTCTTGAGTAAAATATTTCCATGCCTTTTTTGCAGCAGCAACGCACCTTCATACAAATGAGGACTGTTCTCAAG GTTGTGGACAATTCTGGGGCTAAAAAGGTGATGTGCATACAGGCATTGAAAGGGAAGAAAGGGGCAAGATTAGGTGACAC TATAGTAGCATCAGTGAAGGAAGCACATCCTAATGGAAAAGTGAAGAAAGGAAAGGTGGTATATGGGGTTGTTGTGCGCG CAGCAATGCAGAAGGGGAGATGTGATGGCAGCGAGGTCAGGTTTGATGACAATGCTGTTGTTCTTGTTGACAAGCAAGGC CAGCCTATTGGGACCAGAGTTTTTGGACCAGTACCTCATGAGCTTAGGCGGAAGAAGCATGTCAAGATTCTTACCTTGGC AGGGCATATTGCATAAATGAAGAATGGTTTATCCGGCAATTTTTTATGAAATCCAATGTCACATGCACCCTTTTTATAAT TTGGCTAAGTGCAATGTTGGTATTTTTAACTATCAACTTATGAGTAGAGAAACAAGAGTTATGGAATACTTTTACTCGAA TAACGAGCCTTTGTTTTGGTTTCTAGCCTTAATTTGAATTAGAGATGCAATATTTAATTATGATTATTTTTCTTTTGCTT GGATGATATTCCAGTATTTTTACTTAAGAGGAACTTACTAACATTGTTTGTCAGATACAACTTAAAGGCTTGCTAAAGAT GAGTTTTTATTTATTTATAATATAATGACAAAGTGAATGAATTTAAACTGTGGAACTCTCATAAGCATCAGGAGTGGAGG CAAGAGTTTTATTAAATACTTTGTCACGTAATAACTTCAAACTTTAGTGTCAACTTAATGATAAAAAATGAGAGAAATA
CDS sequence (LotjaGi1g1v0195400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCAAGTTTTGCTTCCAGATGTTCTCGTGTGGGCCGTTCTCTGTTCAGCGGATTAAGCAACAGTTCCCTTGGTTC AGCACATGAGATGACACACAACAATTATTTTTCTCAGCAACGCACCTTCATACAAATGAGGACTGTTCTCAAGGTTGTGG ACAATTCTGGGGCTAAAAAGGTGATGTGCATACAGGCATTGAAAGGGAAGAAAGGGGCAAGATTAGGTGACACTATAGTA GCATCAGTGAAGGAAGCACATCCTAATGGAAAAGTGAAGAAAGGAAAGGTGGTATATGGGGTTGTTGTGCGCGCAGCAAT GCAGAAGGGGAGATGTGATGGCAGCGAGGTCAGGTTTGATGACAATGCTGTTGTTCTTGTTGACAAGCAAGGCCAGCCTA TTGGGACCAGAGTTTTTGGACCAGTACCTCATGAGCTTAGGCGGAAGAAGCATGTCAAGATTCTTACCTTGGCAGGGCAT ATTGCATAA
Protein sequence (LotjaGi1g1v0195400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAASFASRCSRVGRSLFSGLSNSSLGSAHEMTHNNYFSQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIV ASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEVRFDDNAVVLVDKQGQPIGTRVFGPVPHELRRKKHVKILTLAGH IA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 28 | 28 | - | – | |
| PANTHER | 25 | 162 | 138 | 1.6E-84 | – | |
| PANTHER | 25 | 162 | 138 | 1.6E-84 | ||
| Gene3D | 43 | 162 | 120 | 7.5E-50 | ||
| SMART | 43 | 162 | 120 | 1.6E-62 | ||
| Hamap | 43 | 162 | 120 | 23.55 | ||
| Pfam | 44 | 161 | 118 | 9.2E-49 | ||
| TIGRFAM | 44 | 161 | 118 | 3.4E-43 | ||
| SUPERFAMILY | 44 | 161 | 118 | 2.22E-43 | ||
| ProSitePatterns | 100 | 126 | 27 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. | ||
| Cellular component | Large ribosomal subunit | The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). |
Expression pattern of LotjaGi1g1v0195400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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