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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0196400 |
| Transcript ID | LotjaGi1g1v0196400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Octicosapeptide/Phox/Bem1p domain-containing protein kinase; TAIR: AT3G48240.1 Octicosapeptide/Phox/Bem1p family protein; Swiss-Prot: sp|B5YKK4|DAPA_THEYD 4-hydroxy-tetrahydrodipicolinate synthase; TrEMBL-Plants: tr|I1JXB3|I1JXB3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0196400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:39508041..39511010) extracted from Lotus japonicus Gifu genome v1.2.
CGGCTCTCCTCCCAGACCAGAATAAAAGGCTAACAAAAGGCTTTAGGTTTCCATCTTCAAAAGCGATTAAGAAAAGAATA TCCGCATATATGGGAATAGAATAGTCCTAACTGACTGTTGTGACACTCCAAGTCGGTTTCCACTTTAAAGTATTATGATT TATTATTTATTTTTTTGGTCGAAATTATGATTTATTTATTTATTAATAAGAAAATAAGAATAAACGCGTCGGCCTGGGCT TTTTTATCAACAATTCCGCCTATAAATGCACCCCAAAATCACATCCCAGGGTTTTCAAGCCCTTTCCTTCCAACGGCGAA GGAACGCAACGCACTCTTTCCAAAGTTCCTTCCTCTCTTGTCTAGATTCTTCCAACCGAACGAGTCATGGAATCCAAACC CGCCCACACTCTCAAACTTCTCTGTAGCTACGGTGGCAAGATCCTACCTCGCCCCACCGACGGCCAACTCCGTTACGTCG GCGGCCACACCAGAGTTCTCGCCGTTGATCGTTCCGTTTCCTTTTCAGGTTCGCTCTTCTCCGTCCGATCTTCCCCTTCC CTTCCTGTATTCATCGTTAACGATTCCTTCCTTGTGGTTTTGTTTTCTGCAGAATTGATGGTGAAGCTTGTAGAGTTGTG CGGTTCGTCCGTGACCTTGAGGTGTCAATTGCCCAAGGGAGACTTGGAGACTTTGATTTCCATCACCAACGACGAGGATT TAGCCAACATCTTCCACGAGTACGATCGCGCCTCGTCGGAATTGACTCATCCGTTGAAAATCAGAGCGGTTCTTTCACCG CCGAGATCGATGATGATCAAGAAGCTCTCTCCCGTTCCGTCGTCGTCTACTTCCAGTGCCAGTCACTCCCCGTTCAGATC GCCTCACACCTCCGCCGAATCACTGCCTTACGCGGCGGTGCATCGTATCGTCCGGCAAAATCGCTCGCCGCGGGCGCCGT TAGGGTTTCCGATCAAAGCTTGTTGCTACCCTGGCCGATTCGAAGGAAGCCCAAGATTCTTGTACCGCGGGCCCCACTGC AGCAATTACTGCCATTAAGAGAAACCATAATATCTACACACAACACAGTAAATAGTAAACGGACGAAAAATACTATGAGT TTAAAAACTAAAAAGAGATGAGAGGGGATATTAAATACCATGATTTTTAATTTTGTTTTTTTGATAAATTCTTAAATCTG GTTGAGGTTCTAATTTTTATTTGAGCCTTAATTTCTTGTTGGAAGCGCGTGGGACTCTTTTTTCAGAGTTAGTGTTCCGT TAACCGCCGTCTGAAACCGAATCAGTTTTTATGACGTGTCCATTGCGTACCGCTTCTAGTGGTTTTGATTCCGTCGTACG CGTCAGACGTCGTTACGTGTGTGTTTTATAAATTGTGACTCCACACGCTGCTGACCTTCGCGTGTGACTTGATTATATGA TTATTATTTGGGTAAGTGTTTTTCCTTTAAATTTGTTGCTCAAATAAAATAAATTATTTCATTCTTGTTGATTTGTATTT GTTGAACTAATCTCTTTACGTTACTTGTTTGTGTATTATTCTTCCCTTTTGCAGGTCCACAATAGATGGTGGATGAGGAC TTTGGTGCCGTGAGGCGTGGGACTGGAATTGGGGAAGAGGACAAAACATTTGAGCCTTATTGACATTGGGTAGACAACTT AAGTGGATTAAGGAACTTGATGATAATAATAATAATTGAAAGATGCAAGACATTGAATGTGGAGACCAACTAAGGGGAAA GGATAAAGAGATATATACCATAAACCTGAAATTGAATTTGAAAAACTATATGACAAACACTTTTCCCTAAAGGAAAAGAA AGGACCCCATAATGAAGTAAGTTGATGACCGAAACAGAGAGCCTTGGGTGGGGCACGTCGGCTAGTTGGTTACTTGACAA TGTCATTATTGAGGCATATTTTCTGGTAGTCTTGTAGTGGGTTCAATAGCTTACTGTTATATAATTGGATGAAGCTTTGA AATAAGTTATTAGATATAGAGGAAAGAATCAGCCCCTACCACTTGAATGCAAGTGGAAGATCCAAATTAAATAAGAAAGT ATAAATAAAAAAAATTATATGCAATGGAATATATTGAAATGAAGTACAAAAGATATTTCACTTCAATACAAAGGAGTAAG AGACAAGTATCAAGGAAAAGGAAGATATTACATCATAGAGAGAAAAATAAGCCCTTGGAAATAAGATTCTATAAGGTATG CCTCAGGAAAAAGAGTACAAGCTTATAGGATCAAATGCAAAGCCTCCAAGAGGAAACAATACACAGATTCTCTGAACCTA AATAAAATAATGAGTAAAATACACTCACCTCCCTCAAGGTTTGCAAGAATGACACTCCACCCCATTCTTTTTTAAAATCT ACACTCCACCCCATTTTTTATAAAGGCAAAATTTAGTGACGAAAACAAATTTGTCACTAATAAAAAATAATTACTAAAAA AAAAATTTAATGCATATACACTATCATACATTAATTTATGAAAATAATTTTACTAAATTAAATTTAAAAAAATCATTCAT TCTGTCTGTTGAGTCCACGTCCCATCTATCTCCAAATCATATTTCTCACGACAAACCGTCACCACCAAGCTTTTGCTCCC TTTAACACGGCGGTCACCGTCCCAGAATATGAAACCCCATGGCACCACTATGCCTCAAAGTTTTGTTGCGACCTTAACCC CAGAACGTGGCACATCCCCTAAGCCACTTGTTCAACTACTTCTTGTGAACTTCACCCCTTTAAGTTGTGAGCGAACGCTC TGTTGGTTTAAGATGTTGTTGGATTTTGTTAAAAACGGTGCTCCACCGTATCGTTGGGTTTAATAACCTCTGATCCACTT CATATTTCTTAATTTTGTTTCTCTATTTTCTTCACCCATTTGTGTTGCTTTTTGGGCCTACAATCCAATTTTGAAAATTG GAGATTTGGA
CDS sequence (LotjaGi1g1v0196400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCCAAACCCGCCCACACTCTCAAACTTCTCTGTAGCTACGGTGGCAAGATCCTACCTCGCCCCACCGACGGCCA ACTCCGTTACGTCGGCGGCCACACCAGAGTTCTCGCCGTTGATCGTTCCGTTTCCTTTTCAGAATTGATGGTGAAGCTTG TAGAGTTGTGCGGTTCGTCCGTGACCTTGAGGTGTCAATTGCCCAAGGGAGACTTGGAGACTTTGATTTCCATCACCAAC GACGAGGATTTAGCCAACATCTTCCACGAGTACGATCGCGCCTCGTCGGAATTGACTCATCCGTTGAAAATCAGAGCGGT TCTTTCACCGCCGAGATCGATGATGATCAAGAAGCTCTCTCCCGTTCCGTCGTCGTCTACTTCCAGTGCCAGTCACTCCC CGTTCAGATCGCCTCACACCTCCGCCGAATCACTGCCTTACGCGGCGGTGCATCGTATCGTCCGGCAAAATCGCTCGCCG CGGGCGCCGTTAGGGTTTCCGATCAAAGCTTGTTGCTACCCTGGCCGATTCGAAGGAAGCCCAAGATTCTTGTACCGCGG GCCCCACTGCAGCAATTACTGCCATTAA
Protein sequence (LotjaGi1g1v0196400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESKPAHTLKLLCSYGGKILPRPTDGQLRYVGGHTRVLAVDRSVSFSELMVKLVELCGSSVTLRCQLPKGDLETLISITN DEDLANIFHEYDRASSELTHPLKIRAVLSPPRSMMIKKLSPVPSSSTSSASHSPFRSPHTSAESLPYAAVHRIVRQNRSP RAPLGFPIKACCYPGRFEGSPRFLYRGPHCSNYCH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 195 | 195 | 1.9E-99 | – | |
| PANTHER | 1 | 195 | 195 | 1.9E-99 | – | |
| CDD | 12 | 108 | 97 | 7.9942E-42 | – | |
| SMART | 23 | 111 | 89 | 2.5E-21 | ||
| Pfam | 24 | 96 | 73 | 1.3E-16 | ||
| SUPERFAMILY | 25 | 113 | 89 | 1.33E-22 | – | |
| Gene3D | 29 | 108 | 80 | 2.5E-8 | – | |
| MobiDBLite | 118 | 141 | 24 | - | – | |
| MobiDBLite | 119 | 140 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0196400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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