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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0208300 |
| Transcript ID | LotjaGi1g1v0208300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase-like superfamily protein, putative; TAIR: AT3G07820.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q40312|PGLR_MEDSA Polygalacturonase; TrEMBL-Plants: tr|I3SLB3|I3SLB3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0208300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:45545418..45547452) extracted from Lotus japonicus Gifu genome v1.2.
AAAGGTTTGCATTCGAGTATAAATAGTGTTCCACCATACTCAAAAGCACATTCATTAATTCAAGAGAAGTTCAAAAAGAT AACGTGTTAGAAACAATAATTATAATGGGCTTGAAGCTCAGTATCATCATACTTATTTTTGTCTCATTTCTATCTGACTT CAGTTCTGCACAATCAGGGGTCATTGATATATCAAAATTTGGTGTAAAACCAAATTCAGATATAACACAGGTATTATCTT GTCATTTTTTTATCATGAATATTTGATTCATTTAAATTTAAATTAAGAAAAATGATTTCAATTTTAGGCTAAAACTCAAT TATTAACAAAATCAAAGGAGAGTTTCAAGGGCATGCTTATTGTTTTTGCCAATACTAATTTATTTGTATTTCCAAATTCT TAAAGGCTTTCGCAAGTGCTTGGAATGAGGCATGCGCGTCACCCACTCCATCCAAAATTGTGATTCCTAGTAGTACATAC AAGATGGGCGCATTAGAACTCAAAGGTCCTTGCAAGGCCCCTATTGAAGTTCAAGTTGATGGAACAATTCAATCATCTGG AAACCCAAGTGACCTCAAAGGGGCCGAACAATGGGTCCGGGTTAGTTATGTTAGCTTTTTAACCATATCAGGTAAAGCAG TTTTTGATGGTGTAGGTGCTGCTGCTTGGAAACAAAATGATTGTGGAACAAATAAGAACTGCAAAATGCTTCCCATGGTA AATACCAATCTTAGCATTTCCCTATAACACGAGTTATGCATTTATCAAAAAATTATAAATCTAAAATTGAACTCTTTGTC CAATGTCAACAGAATTTTGGTTTTTATTTTCTCAATCATTCAATTATCCACGACATTACTTCTAAGGACAGCAAAAGCTT CAATGTCATGGTTTTTGGTTGCAACAATGTTACATTTGATGGCTTTATAGTTAGTGCCCCTGCCACGAGTCTCAACACAG ATGGAATCCACATTGCAAAATCGAGTGATGTTAAGATTCTTAACACTAATATTGGTACTGGAGATGATTGTGTCTCAATA GGAGATGGAAGCAAAAATGTAACTGTCCAAAATGTCAATTGCGGGCCCGGTCATGGTATTAGCGTTGGTAGCCTCGGGAA GAACCCAGCAGAAGAGCCTGTAGTAGGTTTTTTGGTTAAGAATTGCACTTTGACAGAAACTGATAACGGTGTGAGGATCA AGACTTGGCCTAGCGCCCCAGGAACATCTCCTATAACTGATATGCATTTTGAAGATATTACCATGGTCAATGTAAAAAAT CCTATTATTATAGACCAAGAGTATTGTCCATGGAACCAATGCTCCAAGCAGGTATTTGATCAAAGCCTTAATTAAAAAAT TGAATTCATTAATGCAAAGGTTAACATATATCATTTTTTTAACAACTAAAATTTGAAGTTTGAAATTTAGTTGTTAAATT GTATATAAACTAAATTTATTTAAATGACTAATATTTGTCCACTTGTTGGTTCCTTTGTATGAATCAGAGTCCATCTAAAA TAAAGATAAGCAAGGTTTCCTTCAAGAACATTAAGGGCACTTCAGCAACACCGGAAGGGGTGGTTCTTGTTTGTAGCAGT GGTGTACCATGTGACAGTGTAGAGCTAAATGAAGTTGATCTTACATTCAATGGAGCCCCAGCAACCGCTAAATGTGCTAA TGTCAAGCCAACAATCATAGGAAAAGCTCCTACTTGTGCACCGGTAGCTTAAATGATTTTGACATGGCAAAATGTGCCAC AACTTTATAATAATTTCTTTAATTAGTTTTATATATTTCCTTTTGAGAGTAGGGAAACAATCCCTATAAAGCGAAGATGT GAACCCGTTATAGTCTATAGTAAAGATAAAGTTCAATACGATAGTACCATATTAAGATCAATATCATATTTGTAACTATT TTTGTATAAGAAATAAAACCCTCTTAATTTATATAATTGATGAGATTTTACAATGTTAGAAACATTCAAAGACAAGAAGA GCTTAAACTTCAAGAAAACGTAAAAAATTAGGTCC
CDS sequence (LotjaGi1g1v0208300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCTTGAAGCTCAGTATCATCATACTTATTTTTGTCTCATTTCTATCTGACTTCAGTTCTGCACAATCAGGGGTCAT TGATATATCAAAATTTGGTGTAAAACCAAATTCAGATATAACACAGGCTTTCGCAAGTGCTTGGAATGAGGCATGCGCGT CACCCACTCCATCCAAAATTGTGATTCCTAGTAGTACATACAAGATGGGCGCATTAGAACTCAAAGGTCCTTGCAAGGCC CCTATTGAAGTTCAAGTTGATGGAACAATTCAATCATCTGGAAACCCAAGTGACCTCAAAGGGGCCGAACAATGGGTCCG GGTTAGTTATGTTAGCTTTTTAACCATATCAGGTAAAGCAGTTTTTGATGGTGTAGGTGCTGCTGCTTGGAAACAAAATG ATTGTGGAACAAATAAGAACTGCAAAATGCTTCCCATGAATTTTGGTTTTTATTTTCTCAATCATTCAATTATCCACGAC ATTACTTCTAAGGACAGCAAAAGCTTCAATGTCATGGTTTTTGGTTGCAACAATGTTACATTTGATGGCTTTATAGTTAG TGCCCCTGCCACGAGTCTCAACACAGATGGAATCCACATTGCAAAATCGAGTGATGTTAAGATTCTTAACACTAATATTG GTACTGGAGATGATTGTGTCTCAATAGGAGATGGAAGCAAAAATGTAACTGTCCAAAATGTCAATTGCGGGCCCGGTCAT GGTATTAGCGTTGGTAGCCTCGGGAAGAACCCAGCAGAAGAGCCTGTAGTAGGTTTTTTGGTTAAGAATTGCACTTTGAC AGAAACTGATAACGGTGTGAGGATCAAGACTTGGCCTAGCGCCCCAGGAACATCTCCTATAACTGATATGCATTTTGAAG ATATTACCATGGTCAATGTAAAAAATCCTATTATTATAGACCAAGAGTATTGTCCATGGAACCAATGCTCCAAGCAGAGT CCATCTAAAATAAAGATAAGCAAGGTTTCCTTCAAGAACATTAAGGGCACTTCAGCAACACCGGAAGGGGTGGTTCTTGT TTGTAGCAGTGGTGTACCATGTGACAGTGTAGAGCTAAATGAAGTTGATCTTACATTCAATGGAGCCCCAGCAACCGCTA AATGTGCTAATGTCAAGCCAACAATCATAGGAAAAGCTCCTACTTGTGCACCGGTAGCTTAA
Protein sequence (LotjaGi1g1v0208300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLKLSIIILIFVSFLSDFSSAQSGVIDISKFGVKPNSDITQAFASAWNEACASPTPSKIVIPSSTYKMGALELKGPCKA PIEVQVDGTIQSSGNPSDLKGAEQWVRVSYVSFLTISGKAVFDGVGAAAWKQNDCGTNKNCKMLPMNFGFYFLNHSIIHD ITSKDSKSFNVMVFGCNNVTFDGFIVSAPATSLNTDGIHIAKSSDVKILNTNIGTGDDCVSIGDGSKNVTVQNVNCGPGH GISVGSLGKNPAEEPVVGFLVKNCTLTETDNGVRIKTWPSAPGTSPITDMHFEDITMVNVKNPIIIDQEYCPWNQCSKQS PSKIKISKVSFKNIKGTSATPEGVVLVCSSGVPCDSVELNEVDLTFNGAPATAKCANVKPTIIGKAPTCAPVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 22 | 22 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| SUPERFAMILY | 11 | 387 | 377 | 2.84E-106 | ||
| Gene3D | 14 | 389 | 376 | 1.2E-104 | ||
| Phobius | 17 | 24 | 8 | - | – | |
| Phobius | 25 | 393 | 369 | - | – | |
| PANTHER | 27 | 375 | 349 | 1.1E-125 | – | |
| PANTHER | 27 | 375 | 349 | 1.1E-125 | – | |
| Pfam | 52 | 379 | 328 | 1.8E-97 | ||
| SMART | 176 | 202 | 27 | 790.0 | ||
| SMART | 203 | 224 | 22 | 2700.0 | ||
| SMART | 226 | 246 | 21 | 2200.0 | ||
| ProSitePatterns | 233 | 246 | 14 | - | ||
| SMART | 256 | 277 | 22 | 120.0 | ||
| SMART | 287 | 308 | 22 | 9500.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0208300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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