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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0208600 |
| Transcript ID | LotjaGi1g1v0208600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G18485.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485; TrEMBL-Plants: tr|I1KD47|I1KD47_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0208600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:45758823..45762862) extracted from Lotus japonicus Gifu genome v1.2.
GTTATTTCTTCCCTCCTTAATGTGAATCAATGAATTTCTATCCTGAAACTCAAGTCTGGTGTGGTAGCAATGGCTTCTCT TGTGCTTCAACCTCTATCATGCCATCACCACCTCCACCACACACTCGCCATTCATAAAAGAACAACCACTACGACAACGA ACGCCACCACCACGATAACTCCCTCAATCACATTCTCACCACAACAACACTTCCAACGCCTCTGCGACTCCGGCAACCTC AATGAAGCCCTCAACATGCTCCACCGCGACACCGTTTCCTCCTCCGACCTCAAAGAAGCTTTCGGCCTCTTGCTACAATC CTGCGGCCGCCAGAAAAACCTCGAGGTTGGCCGAAGAGTGCACGCATTGGTCTCCGCCTCATCGCTGTTCAGAAACGACG TCGTTCTCAACACCCGCATAGTCACCATGTACTCCACGTGCGGTTCGCCGTCGGAGTCTCGTTCCGTCTTCGACGCGCTG CAGAGGAAGAATCTCTTCCTCTGGAACGCGCTTATCAGCGGTTACGCCAAGAACACGCTTTTCTTCGACGCGGTTTCCCT CTTCGTCGAGCTTCTCTCCGCCGCGGAGCTCGCGCCGGACAATTTCACGCTGCCGTGCGTGATTAAGGCGTGTTCTGGGC TCTCCGACGCGGCGGAGGTTGGAGGAGCTGTTCACGCTTTTGCCTTGAAGACGGGTCTTTTCCTTGACGTGTTTGTGGGT AACGCGTTGATTGCCATGTACGGGAAGTTCGGGTTTGTGGATAGTGCACTCAAGGTGTTTGAGACTATGCCGGTGAAGAA TTTGGTTTCGTGGAACTCGATGATGTGTGTTTATTCGGAGAATAGGATTTTTGAATCGAGTTATGGTTTGCTGAAGGGGC TCTTGAATGGTGAAGAAGGTTTTGTACCTGATGTTGCTACTGTGGTGACGGTGGTGCCTGCGTGTGCAGCACATGGTGAA TTGGAAATAGGGATGGTGCTTCATGGTTTGGCGTTGAAACTGGGGCTTTGTGGAGAGCTAATGGTGAATAATTCCCTCAT GGACATGTATGCCAAATGTGGTTACTTACGTGAAGCACGGGTTCTGTTTGATATGAATGGTGATAAGAATGTTGTTACTT GGAATTCTATGATCGGGGCATACTCTAAGAAGGGAGATTCTCTTGGAACGTTTGAGCTGCTGCGGAGGATGCAGATGGAT GAGAAGATAAGGGTGGATGGGGTGACACTGTTAAATGTTTTGCCGGCTTGTGCGGAAGAGGTTCAGTTGTTGACCTTGAA GGAGCTTCATGGTTATGCTTTTAGGAATGGATTTATTCAGAGAGATGAATTAGTGGCAAATGCTTTTGTTGCTGGATATG CCAAGTGTGGTTCATTGGATTACGCTGAGCGTGCGTTCCATGGTATAGAGGCAAAAACAGTGAGTTCTTGGAATGCACTG ATTGGTGCCCATGCGCAGAATGGTTTACCTGAAAAGGCTTTGGACTTGTATCTTGTGATGAAAGATTCTGGCTTGGATCC TGATTGCTTTACAATTGGTAGCCTTCTTTTGGCTTGTGCCCACCTGAAATTCCTGCGCCAGGGGAAAGCGATTCATGGTT TTATGTTGCGAAACGGTTTAGAATTGGACGAATTTATTGGGATATCATTGCTGTCACTTTATGTTCACTGCGGGAAAATA TTCGCAGCCAAGTTATTTTTTGATAAGATGAAAGACAAAAGCTCAGTTTGCTGGAATACAATGATTAGTGGCTTTTCCCA GAATGAGTTTCCTTCTGAGGCCCTTGATACATTTCGTCAAATGCTTTCAAGTGGAACTCAGCCTCATGAGATCGCCATAA TGGGTGTTTTGGGGGCTTGTTCACAGGTGTCGGCATTGCGGCTTGGGAAGGAAGTTCACTCCTTTGCAATAAAAGCTCAT CTCACGAAGGACACATTTGTTACTTGTTCATTGATAGACATGTATGCGAAATGTGGATGCATGGAACAATCTCAGAACAT TTTTGACGGGCTGAATGTGAAAGATGAAGCATCATGGAATGTTATAATTGCGGGATATGGAATTCATGGGCATGGAGAGA AGGCTATAGAGATGTTTAAATTAATGCAAAGTGCTGGCTGCAGACCAGATTCTTTTACGTTTATAGGATTGCTAATAGCC TGTAACCATTCTGGCTTAGTATCAGAAGGGTTGAATTATCTTGGTCAGATGCAAAGTTTATATGGTTTAAAGCCAAAACT GGAGCATTATGCTTGCGTTGTCGATATGCTTGGTCGGGCAGGACAACTGAAGGAAGCTTTGAAGCTTATAAATGAGCTAC CAGATGAACCAGATTCAGGGATATGGAGTTCATTGCTCAGTTCCTGTAGGAATTATGGGGATCTGGATATTGGTGAGGAA GTTTCCAAGAAGTTATTAGAGTTGGGGCCTGACAAAGCTGAGAATTATGTATTGATATCAAACTTATATGCTGGATTAGG AAAATGGGATGAGGTCAGAAAGGTGCGGCAGAGGATGAAGGATATTGGCCTTCAGAAAGATGCTGGATGCAGTTGGATTG AAATAGGAGGAAAGGTTTATAGATTTCATGTTGGTGATGGATCTCTTTTGGAATCAAATAAAATTCAGCTGAGTTGGATT AAACTGGAGAAGAAAATAAGAAAGTTTGGATATAAACCAGACACTAGTTGCGTGCTTCATGAACTGGAGGAAGAGGAAAA GATTAAGATACTGAAGAACCATAGTGAGAAGCTTGCAATTTCTTTTGGTTTATTAAATACGGCTGAGGGTACTACACTGA GGGTTTGCAAAAATCTACGTATTTGTGTAGACTGTCACAATGCCATTAAATTAGTATCAAGGGTTGTTGGAAGGGAGATT ATTGTAAGGGACAACAAGCGCTTTCATCATTTCAAAAATGGATCTTGTACCTGTGGAGATTACTGGTAGTTGAGGGTTTA TGTTAGTCTTTAATGATTTTATCATTAATTTGCACTAGTGAAGGATTCCATAAAACATCAATCGATGGAATTCTAGCGAA TCACTTCTGCTTATCTTCCCCATTGTACACTTTGTACATACAATCTAATTCTTTCAAACAAGATATTCTGTGCTGTTAGT GACATAAAAGATGAACCAAACAAAAAAGACCCAGTCTCTGACATGCAAACAAGTACCCCCAATGTCAACTTGTTGAATAA TTTTTTCCAATGTTAAATAGCATGTGACTGGATTTTGTATATGAACAGCCTTTTCTGGAGAAGGAAAGAAAAGGCTCCAG AATTTCAATCGAGGTAAATCTGTAGAATTTTTCAACCATTGAATTAAAATTGCAGGAGCAGGGGATCCAATTCCCTCTTC CTTAAGCTCATGATGGTCACGTCCAGGTAAATCTGCCACGGATTTATCTCTTGTTGTGAAGGTGAGCTTCTTGTTGAGTT CATATGCATAGACTGGGATACTCTTGAATATTTCACATGATATCCATGAGATTGAAAAGTAGCTGAGGTGGGTGATTTTT CTAGTAGCAGTTCCTATTGGTAGATTGTCTGTGTATCAGAACAGTTTGAGCATAACAAGCTAATTGCTTTTAGTTTCCTG GGTTTGACATGCTCTTTTCACTTAAATTTCAGGATAAAGTTGCTCATATCCACTACTTATCTGATGAATGAGAATATGAA GTACTTATGTTTTACATGTCAAATGCTGCAGACTGAAGTACTGAAGCAATTGTCATCCATGGGTTGACTGGTAGTTTATG TTGGAAATGGTGCTGTTCAGAGTTCAACTAATTTGTATGGATTTATAATTGCATGCTCTTTGAGCACACTTCTCTTATTT TTATTAAATAATATGCCAAACTTATTTGACCTAAGAACTTTAATTTTAGATAGATGTGCCTCTAGACATTGTGGCTAGGG ATGTAACTGAAGATCAGAGTTAATTTTCTGCATTTGAGGTATCTTTTTCAGGATCTTACATATAGGTTGATTACTGACTA TTAAAAATTATCGATATGTTTCCAAGACTTCTACTTGCAG
CDS sequence (LotjaGi1g1v0208600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTCTTGTGCTTCAACCTCTATCATGCCATCACCACCTCCACCACACACTCGCCATTCATAAAAGAACAACCAC TACGACAACGAACGCCACCACCACGATAACTCCCTCAATCACATTCTCACCACAACAACACTTCCAACGCCTCTGCGACT CCGGCAACCTCAATGAAGCCCTCAACATGCTCCACCGCGACACCGTTTCCTCCTCCGACCTCAAAGAAGCTTTCGGCCTC TTGCTACAATCCTGCGGCCGCCAGAAAAACCTCGAGGTTGGCCGAAGAGTGCACGCATTGGTCTCCGCCTCATCGCTGTT CAGAAACGACGTCGTTCTCAACACCCGCATAGTCACCATGTACTCCACGTGCGGTTCGCCGTCGGAGTCTCGTTCCGTCT TCGACGCGCTGCAGAGGAAGAATCTCTTCCTCTGGAACGCGCTTATCAGCGGTTACGCCAAGAACACGCTTTTCTTCGAC GCGGTTTCCCTCTTCGTCGAGCTTCTCTCCGCCGCGGAGCTCGCGCCGGACAATTTCACGCTGCCGTGCGTGATTAAGGC GTGTTCTGGGCTCTCCGACGCGGCGGAGGTTGGAGGAGCTGTTCACGCTTTTGCCTTGAAGACGGGTCTTTTCCTTGACG TGTTTGTGGGTAACGCGTTGATTGCCATGTACGGGAAGTTCGGGTTTGTGGATAGTGCACTCAAGGTGTTTGAGACTATG CCGGTGAAGAATTTGGTTTCGTGGAACTCGATGATGTGTGTTTATTCGGAGAATAGGATTTTTGAATCGAGTTATGGTTT GCTGAAGGGGCTCTTGAATGGTGAAGAAGGTTTTGTACCTGATGTTGCTACTGTGGTGACGGTGGTGCCTGCGTGTGCAG CACATGGTGAATTGGAAATAGGGATGGTGCTTCATGGTTTGGCGTTGAAACTGGGGCTTTGTGGAGAGCTAATGGTGAAT AATTCCCTCATGGACATGTATGCCAAATGTGGTTACTTACGTGAAGCACGGGTTCTGTTTGATATGAATGGTGATAAGAA TGTTGTTACTTGGAATTCTATGATCGGGGCATACTCTAAGAAGGGAGATTCTCTTGGAACGTTTGAGCTGCTGCGGAGGA TGCAGATGGATGAGAAGATAAGGGTGGATGGGGTGACACTGTTAAATGTTTTGCCGGCTTGTGCGGAAGAGGTTCAGTTG TTGACCTTGAAGGAGCTTCATGGTTATGCTTTTAGGAATGGATTTATTCAGAGAGATGAATTAGTGGCAAATGCTTTTGT TGCTGGATATGCCAAGTGTGGTTCATTGGATTACGCTGAGCGTGCGTTCCATGGTATAGAGGCAAAAACAGTGAGTTCTT GGAATGCACTGATTGGTGCCCATGCGCAGAATGGTTTACCTGAAAAGGCTTTGGACTTGTATCTTGTGATGAAAGATTCT GGCTTGGATCCTGATTGCTTTACAATTGGTAGCCTTCTTTTGGCTTGTGCCCACCTGAAATTCCTGCGCCAGGGGAAAGC GATTCATGGTTTTATGTTGCGAAACGGTTTAGAATTGGACGAATTTATTGGGATATCATTGCTGTCACTTTATGTTCACT GCGGGAAAATATTCGCAGCCAAGTTATTTTTTGATAAGATGAAAGACAAAAGCTCAGTTTGCTGGAATACAATGATTAGT GGCTTTTCCCAGAATGAGTTTCCTTCTGAGGCCCTTGATACATTTCGTCAAATGCTTTCAAGTGGAACTCAGCCTCATGA GATCGCCATAATGGGTGTTTTGGGGGCTTGTTCACAGGTGTCGGCATTGCGGCTTGGGAAGGAAGTTCACTCCTTTGCAA TAAAAGCTCATCTCACGAAGGACACATTTGTTACTTGTTCATTGATAGACATGTATGCGAAATGTGGATGCATGGAACAA TCTCAGAACATTTTTGACGGGCTGAATGTGAAAGATGAAGCATCATGGAATGTTATAATTGCGGGATATGGAATTCATGG GCATGGAGAGAAGGCTATAGAGATGTTTAAATTAATGCAAAGTGCTGGCTGCAGACCAGATTCTTTTACGTTTATAGGAT TGCTAATAGCCTGTAACCATTCTGGCTTAGTATCAGAAGGGTTGAATTATCTTGGTCAGATGCAAAGTTTATATGGTTTA AAGCCAAAACTGGAGCATTATGCTTGCGTTGTCGATATGCTTGGTCGGGCAGGACAACTGAAGGAAGCTTTGAAGCTTAT AAATGAGCTACCAGATGAACCAGATTCAGGGATATGGAGTTCATTGCTCAGTTCCTGTAGGAATTATGGGGATCTGGATA TTGGTGAGGAAGTTTCCAAGAAGTTATTAGAGTTGGGGCCTGACAAAGCTGAGAATTATGTATTGATATCAAACTTATAT GCTGGATTAGGAAAATGGGATGAGGTCAGAAAGGTGCGGCAGAGGATGAAGGATATTGGCCTTCAGAAAGATGCTGGATG CAGTTGGATTGAAATAGGAGGAAAGGTTTATAGATTTCATGTTGGTGATGGATCTCTTTTGGAATCAAATAAAATTCAGC TGAGTTGGATTAAACTGGAGAAGAAAATAAGAAAGTTTGGATATAAACCAGACACTAGTTGCGTGCTTCATGAACTGGAG GAAGAGGAAAAGATTAAGATACTGAAGAACCATAGTGAGAAGCTTGCAATTTCTTTTGGTTTATTAAATACGGCTGAGGG TACTACACTGAGGGTTTGCAAAAATCTACGTATTTGTGTAGACTGTCACAATGCCATTAAATTAGTATCAAGGGTTGTTG GAAGGGAGATTATTGTAAGGGACAACAAGCGCTTTCATCATTTCAAAAATGGATCTTGTACCTGTGGAGATTACTGGTAG
Protein sequence (LotjaGi1g1v0208600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASLVLQPLSCHHHLHHTLAIHKRTTTTTTNATTTITPSITFSPQQHFQRLCDSGNLNEALNMLHRDTVSSSDLKEAFGL LLQSCGRQKNLEVGRRVHALVSASSLFRNDVVLNTRIVTMYSTCGSPSESRSVFDALQRKNLFLWNALISGYAKNTLFFD AVSLFVELLSAAELAPDNFTLPCVIKACSGLSDAAEVGGAVHAFALKTGLFLDVFVGNALIAMYGKFGFVDSALKVFETM PVKNLVSWNSMMCVYSENRIFESSYGLLKGLLNGEEGFVPDVATVVTVVPACAAHGELEIGMVLHGLALKLGLCGELMVN NSLMDMYAKCGYLREARVLFDMNGDKNVVTWNSMIGAYSKKGDSLGTFELLRRMQMDEKIRVDGVTLLNVLPACAEEVQL LTLKELHGYAFRNGFIQRDELVANAFVAGYAKCGSLDYAERAFHGIEAKTVSSWNALIGAHAQNGLPEKALDLYLVMKDS GLDPDCFTIGSLLLACAHLKFLRQGKAIHGFMLRNGLELDEFIGISLLSLYVHCGKIFAAKLFFDKMKDKSSVCWNTMIS GFSQNEFPSEALDTFRQMLSSGTQPHEIAIMGVLGACSQVSALRLGKEVHSFAIKAHLTKDTFVTCSLIDMYAKCGCMEQ SQNIFDGLNVKDEASWNVIIAGYGIHGHGEKAIEMFKLMQSAGCRPDSFTFIGLLIACNHSGLVSEGLNYLGQMQSLYGL KPKLEHYACVVDMLGRAGQLKEALKLINELPDEPDSGIWSSLLSSCRNYGDLDIGEEVSKKLLELGPDKAENYVLISNLY AGLGKWDEVRKVRQRMKDIGLQKDAGCSWIEIGGKVYRFHVGDGSLLESNKIQLSWIKLEKKIRKFGYKPDTSCVLHELE EEEKIKILKNHSEKLAISFGLLNTAEGTTLRVCKNLRICVDCHNAIKLVSRVVGREIIVRDNKRFHHFKNGSCTCGDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 45 | 192 | 148 | 3.7E-16 | ||
| PANTHER | 52 | 191 | 140 | 3.6E-154 | – | |
| ProSiteProfiles | 110 | 140 | 31 | 6.127 | ||
| ProSiteProfiles | 141 | 176 | 36 | 8.835 | ||
| TIGRFAM | 144 | 177 | 34 | 0.0029 | ||
| Pfam | 144 | 169 | 26 | 6.2E-4 | ||
| Gene3D | 193 | 304 | 112 | 3.8E-14 | ||
| PANTHER | 197 | 302 | 106 | 3.6E-154 | – | |
| ProSiteProfiles | 213 | 247 | 35 | 9.065 | ||
| Pfam | 218 | 244 | 27 | 0.003 | ||
| ProSiteProfiles | 281 | 315 | 35 | 5.525 | ||
| PANTHER | 305 | 396 | 92 | 3.6E-154 | – | |
| Gene3D | 312 | 402 | 91 | 1.8E-13 | ||
| ProSiteProfiles | 316 | 346 | 31 | 6.138 | ||
| Pfam | 321 | 341 | 21 | 0.034 | ||
| ProSiteProfiles | 347 | 377 | 31 | 9.109 | ||
| TIGRFAM | 349 | 383 | 35 | 2.0E-4 | ||
| Pfam | 349 | 376 | 28 | 2.6E-5 | ||
| Gene3D | 403 | 512 | 110 | 1.0E-17 | ||
| PANTHER | 404 | 512 | 109 | 3.6E-154 | – | |
| ProSiteProfiles | 419 | 449 | 31 | 6.862 | ||
| ProSiteProfiles | 450 | 484 | 35 | 11.575 | ||
| Pfam | 450 | 497 | 48 | 1.8E-9 | ||
| TIGRFAM | 453 | 486 | 34 | 5.4E-7 | ||
| ProSiteProfiles | 485 | 519 | 35 | 6.982 | ||
| PANTHER | 504 | 608 | 105 | 3.6E-154 | – | |
| Gene3D | 516 | 611 | 96 | 2.7E-14 | ||
| ProSiteProfiles | 520 | 550 | 31 | 6.445 | ||
| Pfam | 526 | 550 | 25 | 0.24 | ||
| ProSiteProfiles | 551 | 585 | 35 | 11.641 | ||
| TIGRFAM | 553 | 585 | 33 | 9.1E-7 | ||
| Pfam | 553 | 582 | 30 | 3.6E-7 | ||
| PANTHER | 603 | 817 | 215 | 3.6E-154 | – | |
| ProSiteProfiles | 621 | 651 | 31 | 6.281 | ||
| Gene3D | 628 | 838 | 211 | 1.5E-35 | ||
| Pfam | 651 | 698 | 48 | 7.3E-10 | ||
| ProSiteProfiles | 652 | 686 | 35 | 11.948 | ||
| TIGRFAM | 655 | 688 | 34 | 5.6E-9 | ||
| ProSiteProfiles | 687 | 722 | 36 | 6.347 | ||
| ProSiteProfiles | 723 | 753 | 31 | 7.399 | ||
| Pfam | 727 | 751 | 25 | 0.17 | ||
| ProSiteProfiles | 755 | 785 | 31 | 6.478 | ||
| ProSiteProfiles | 789 | 823 | 35 | 7.607 | ||
| Pfam | 826 | 949 | 124 | 1.2E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0208600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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