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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0210200 |
| Transcript ID | LotjaGi1g1v0210200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT5G48050.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr|I3T814|I3T814_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0210200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:45991034..45993245) extracted from Lotus japonicus Gifu genome v1.2.
ATATCTTAGAGATTTTAACATGGTATCAAGAGCTCTGAACGATCCTAGGGATCTTTCTCTCTGATTTTTTTTTTTTTTTC GGTTTTCTTCTTCTTCATCACCATGGCTGATGAAGCTTCTGCTACTGCAACTGGAGTTGCTGCAACTCAGGTTCCACCTC CAGTTCCGCTTGCGGTTGCTCAACCGCAATTGAGTTCTTCCTCTCTGGTTCACAAGCTAATCTTGAAGCTTGATGATTCT AACTTCCTTTCATGGAAGCAGCACGTTGAAGGCATCGTGCGCACGCACAGGTTGCAGAGCTTTCTTGCTCATCCCGAGAT TCCCCCTCGCTGGCTCAGTGAGGATGATCGCGTGAATGCAGTGGAAAATCCTGCATATCAAACCTGGGAGCAACAAGATT CTGCACTGTTTACATGGCTTCTCTCGTCTCTTTCGCCATCAGTGCTTCCTACCGTGGTGAATTGCACTCAGTCTTGGCAA ATTTGGGAAGCGGTGCTTGATTTCTTTCAAGCACAGTCGCTCGCTCAATCTACGCAACTACGTTCAGAGTTGCGATCGAT AACCAAGGGCTCGAAGACTTCGTCGGAATTTCTCAAGCGCATCAAGTCCATCGTGAACGCGCTTGTCTCCATCGGAGATC CAGTTACCTATCGCGAGCACCTTGAGGCTATTTTCGATGGCCTTCCCGAAGATTACAGTCATCTCATGACCGTCATCTAT AATCGCGATGCTCTGTGCTCGATCTCGCATGTTGAATCCATGGTTATCGCGCATGAAGCGCGACTTGAGCGTTCTCGCAC TCGTCAGATGAGTGCAAATCCTCCGTCAGCACTTCTCGCTCAAGCCGCGCCACCGCCATCGACTCCAGCGCCGTCGTCTC CAGCGCCAGCATCAACTGTCTCTACACAATCGACTACATCCTCAGAAGCTAACTATGCTTCTAGTGCTGTCAACAACTCT TACGATGATCGCTCTTTTGATAATCGTGGTGGATATGATGATTCTCGCTCTCGCGGTGGCTATGGTGGTAGATCTGGTGG TCGAAACTCTCGTGGTGGAAGAAATGGTAATCGCAGTGGTGTTCAATGTCAGATCTGTTACAAGTTTGGACATGATGCTA GCATTTGCTATCATCGAGGTTCATCGGGATCTAGTGGCTCGTTTGGCATGCAATCTTCTGGTTATGGCATGCCTATGCCT ATGCATCCACAAATGCTACCACACTTTGGATTCTCACCTTTCTATGGTGTTCCACAATTTGGAAATCCTACTCAGTTTGG TAATTCTCAGTTTGGACATCTTCCTGGCATGATGTTTGGCCAGTATCCTCAAAATTCAGGCATGAACATGAGCAATTTTG CTCAGTCCTTTGGTCATTCTCCTTATGGTGGTGCACAGTGGCATCCTACACCTGCACAATTCCCTGGTGGCAATCCCAGG CCTGCAAATCCTCCAGCAAGAGCTCCACAGGCCATGCTTACTGGCCCTACTACTTCTACTGCTGCAGCAAATCTGAGCTC CTGGTTTCCTGACTCTGGAGCTACACATCATGTTACCAATGATGCATCTGTGATTTCTGATAGTGTATCTCTCACTGGTA ATGATCACATCCTAATGGGGAATGGACAAGGTTTGCCAATCCACTCTATTGGTTCAGCTTCTTTTCCTTCTCCTTATCAC AAAAACACTACACTCACTCTTAGTGATCTTCTTTTAGTTCCTAATATCACAAAGAATCTAGTCAGTGTTAGTAAATTTGC CAAGGATAATAATGTCTATTTTGAATTTCACTCATCCTATTGTGTTGTGAAATCTCAGGCAACTTCTAGGGTTCTACTCA GGGGTACAGTTGGTCCAGATGGTCTATATATCTTTGAGGGGATGCATACTCCAACCTTTCCTTCAGCCAGTCCTGTTAAA GCTTCTTCTGTTCCAGTTCCAGTTGCTGTTTCCTCTGTTAATACTGCTTCTTTACCTATTTCTGATGTACCTAGTCCTAG TATTTCTACTCATAATACTACCTCTGATGTAAATACTACTTCTTATGCCTTGTGGCACAATAGGCTAGGTCATCCTCATC ATGAGGCTTTGCATTCTGCTTTATCTGTTTGTAAAATACCAGTACCTAATAAAGCAAAGTTTTCAGTATGTTCAGCTTGT TGTTTGGCAAAGTCTCACAAATTACCTTCTTCTTCTTCTCATACTGTTTATA
CDS sequence (LotjaGi1g1v0210200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGATGAAGCTTCTGCTACTGCAACTGGAGTTGCTGCAACTCAGGTTCCACCTCCAGTTCCGCTTGCGGTTGCTCA ACCGCAATTGAGTTCTTCCTCTCTGGTTCACAAGCTAATCTTGAAGCTTGATGATTCTAACTTCCTTTCATGGAAGCAGC ACGTTGAAGGCATCGTGCGCACGCACAGGTTGCAGAGCTTTCTTGCTCATCCCGAGATTCCCCCTCGCTGGCTCAGTGAG GATGATCGCGTGAATGCAGTGGAAAATCCTGCATATCAAACCTGGGAGCAACAAGATTCTGCACTGTTTACATGGCTTCT CTCGTCTCTTTCGCCATCAGTGCTTCCTACCGTGGTGAATTGCACTCAGTCTTGGCAAATTTGGGAAGCGGTGCTTGATT TCTTTCAAGCACAGTCGCTCGCTCAATCTACGCAACTACGTTCAGAGTTGCGATCGATAACCAAGGGCTCGAAGACTTCG TCGGAATTTCTCAAGCGCATCAAGTCCATCGTGAACGCGCTTGTCTCCATCGGAGATCCAGTTACCTATCGCGAGCACCT TGAGGCTATTTTCGATGGCCTTCCCGAAGATTACAGTCATCTCATGACCGTCATCTATAATCGCGATGCTCTGTGCTCGA TCTCGCATGTTGAATCCATGGTTATCGCGCATGAAGCGCGACTTGAGCGTTCTCGCACTCGTCAGATGAGTGCAAATCCT CCGTCAGCACTTCTCGCTCAAGCCGCGCCACCGCCATCGACTCCAGCGCCGTCGTCTCCAGCGCCAGCATCAACTGTCTC TACACAATCGACTACATCCTCAGAAGCTAACTATGCTTCTAGTGCTGTCAACAACTCTTACGATGATCGCTCTTTTGATA ATCGTGGTGGATATGATGATTCTCGCTCTCGCGGTGGCTATGGTGGTAGATCTGGTGGTCGAAACTCTCGTGGTGGAAGA AATGGTAATCGCAGTGGTGTTCAATGTCAGATCTGTTACAAGTTTGGACATGATGCTAGCATTTGCTATCATCGAGGTTC ATCGGGATCTAGTGGCTCGTTTGGCATGCAATCTTCTGGTTATGGCATGCCTATGCCTATGCATCCACAAATGCTACCAC ACTTTGGATTCTCACCTTTCTATGGTGTTCCACAATTTGGAAATCCTACTCAGTTTGGTAATTCTCAGTTTGGACATCTT CCTGGCATGATGTTTGGCCAGTATCCTCAAAATTCAGGCATGAACATGAGCAATTTTGCTCAGTCCTTTGGTCATTCTCC TTATGGTGGTGCACAGTGGCATCCTACACCTGCACAATTCCCTGGTGGCAATCCCAGGCCTGCAAATCCTCCAGCAAGAG CTCCACAGGCCATGCTTACTGGCCCTACTACTTCTACTGCTGCAGCAAATCTGAGCTCCTGGTTTCCTGACTCTGGAGCT ACACATCATGTTACCAATGATGCATCTGTGATTTCTGATAGTGTATCTCTCACTGGTAATGATCACATCCTAATGGGGAA TGGACAAGGCAACTTCTAG
Protein sequence (LotjaGi1g1v0210200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADEASATATGVAATQVPPPVPLAVAQPQLSSSSLVHKLILKLDDSNFLSWKQHVEGIVRTHRLQSFLAHPEIPPRWLSE DDRVNAVENPAYQTWEQQDSALFTWLLSSLSPSVLPTVVNCTQSWQIWEAVLDFFQAQSLAQSTQLRSELRSITKGSKTS SEFLKRIKSIVNALVSIGDPVTYREHLEAIFDGLPEDYSHLMTVIYNRDALCSISHVESMVIAHEARLERSRTRQMSANP PSALLAQAAPPPSTPAPSSPAPASTVSTQSTTSSEANYASSAVNNSYDDRSFDNRGGYDDSRSRGGYGGRSGGRNSRGGR NGNRSGVQCQICYKFGHDASICYHRGSSGSSGSFGMQSSGYGMPMPMHPQMLPHFGFSPFYGVPQFGNPTQFGNSQFGHL PGMMFGQYPQNSGMNMSNFAQSFGHSPYGGAQWHPTPAQFPGGNPRPANPPARAPQAMLTGPTTSTAAANLSSWFPDSGA THHVTNDASVISDSVSLTGNDHILMGNGQGNF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 39 | 496 | 458 | 6.9E-77 | – | |
| PANTHER | 39 | 496 | 458 | 6.9E-77 | – | |
| Pfam | 95 | 229 | 135 | 5.1E-20 | – | |
| MobiDBLite | 231 | 323 | 93 | - | – | |
| MobiDBLite | 245 | 259 | 15 | - | – | |
| MobiDBLite | 260 | 291 | 32 | - | – | |
| MobiDBLite | 436 | 455 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0210200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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