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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0210800 |
| Transcript ID | LotjaGi1g1v0210800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT1G52640.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640, mitochondrial; TrEMBL-Plants: tr|I1LG12|I1LG12_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0210800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:46316956..46318527) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTTTCCGGTCACTCTTCTCTAGGTATAAAAACTTAACCTCTGTGGTTTGTCCTCTTTTCCAACACAAGCAAAACTG CCATCACTTTCACTCTTTGCCAACCCCACAAGTGTTTAACCCATTATTACCAGACCTTGTGAGTGAGATTTCTCGTGTAG TCAGTGATCATCGACACCCTCACCATGATCTAGAACTCTCTCTCAATCAATTTTCAGCACAAATTTCCTCTGATTTAGTT GAGCAAGTCTTGAAAAGGTGTAAGAATCTCGGCTTCTCAGCCCACAGATTCTTCCTTTGGGCTAAATCAATTCCAGGTTT TCAGCACAGTGTTGAAAGTTTCCACATTTTGGTAGAAATCTTAGGAAGTTGTAAACAATTTGCCATACTCTGGGATTTTC TCACAGAAATGAGAGAATCTTCTTGTTGTGAAATCAACAGTGATATTTTCTGGCTCATTTTCAAGGCCTATAGCCGGGCT AATTTACCAGATGGCGCAATCCGGTCTTTCTTGAGAATGGATGAATTTGGAATTAAGCCGACTATTCATGATTTTGATAT GCTTTTGTACTTTTTATGCAAAAGGAAGCACGTCAAGCAGGCTCAGCAATTTTTTGATCAAGCTAAGAGTCATTTCTTGT TAACTGCTAAAACTTACAGCATTTTGATAAGTGGATGGGGTAAGATTGGTGATTCTGGGAAGGCGCGTGAGCTGTTTCAA GCAATGCTTGACCAAGGATGTCCAGTGGATTTGCTTGCATATAATAATTTCTTAGACGCACTCTGCAAAGGAGGTTGTGT GGATGAAGCTACAAATATTTTTCATGATATGTTGTCAAAAAGAGTTGAGCCAGATGCTTTTACTTACTCAATATTCATTC ACACATATTGTGACGCAAATGATATACATTCAGCTTTCAGGGTTCTTGATAAAATGAGAAGATGTAACCTTTTGCCAAAT GTGTTTACATACAATTGTATTATAAAGCGACTTTGTAAGAATGATAAAGTGGAAGAAGCTTATGAATTGTTGGATGAAAT GATTTTAAGAGGAGTAAAACCAGACACTTGGAGTTATAATGCAATACAAGCTCACCATTGTGATCATTGTGAGGTCAGTA GGGCTCTAAGGTTAATGTCTAGAATGGAAAAGGATAACTGTTTTCCTGATCGACATACATATAACATGGTGCTCAAATTG CTGATTAGGATAGGAAGGTTTGATAAGGCAACTGAAGTTTGGGAGAACATGGGGCATACGAATTTTTATCCTTCTGTCTC AACATATTCTGTCATGATTCATGGTCTCTGTAAGAAGAAGGGAAAGCTAGAGGAGGCATGTAAGTACTTTGAGATGATGA TTGATGAAGGAATACCGCCTTATGTTACTACAGTTGAAATGCTAAGGAATCGGCTCTTGGGTTTAGGGCTTTTGGATCAC ATTGACATACTTGCTGATAAGATGAGGCAGGGTACTTCATGTTCAATCCATGAATTGGCAAATATTATGAGTGGTGTTAG AGCAGCTCATAAGGCTTCAAGGCGTGATGAGACTGATATAGAAAGTGACTGA
CDS sequence (LotjaGi1g1v0210800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTCCGGTCACTCTTCTCTAGGTATAAAAACTTAACCTCTGTGGTTTGTCCTCTTTTCCAACACAAGCAAAACTG CCATCACTTTCACTCTTTGCCAACCCCACAAGTGTTTAACCCATTATTACCAGACCTTGTGAGTGAGATTTCTCGTGTAG TCAGTGATCATCGACACCCTCACCATGATCTAGAACTCTCTCTCAATCAATTTTCAGCACAAATTTCCTCTGATTTAGTT GAGCAAGTCTTGAAAAGGTGTAAGAATCTCGGCTTCTCAGCCCACAGATTCTTCCTTTGGGCTAAATCAATTCCAGGTTT TCAGCACAGTGTTGAAAGTTTCCACATTTTGGTAGAAATCTTAGGAAGTTGTAAACAATTTGCCATACTCTGGGATTTTC TCACAGAAATGAGAGAATCTTCTTGTTGTGAAATCAACAGTGATATTTTCTGGCTCATTTTCAAGGCCTATAGCCGGGCT AATTTACCAGATGGCGCAATCCGGTCTTTCTTGAGAATGGATGAATTTGGAATTAAGCCGACTATTCATGATTTTGATAT GCTTTTGTACTTTTTATGCAAAAGGAAGCACGTCAAGCAGGCTCAGCAATTTTTTGATCAAGCTAAGAGTCATTTCTTGT TAACTGCTAAAACTTACAGCATTTTGATAAGTGGATGGGGTAAGATTGGTGATTCTGGGAAGGCGCGTGAGCTGTTTCAA GCAATGCTTGACCAAGGATGTCCAGTGGATTTGCTTGCATATAATAATTTCTTAGACGCACTCTGCAAAGGAGGTTGTGT GGATGAAGCTACAAATATTTTTCATGATATGTTGTCAAAAAGAGTTGAGCCAGATGCTTTTACTTACTCAATATTCATTC ACACATATTGTGACGCAAATGATATACATTCAGCTTTCAGGGTTCTTGATAAAATGAGAAGATGTAACCTTTTGCCAAAT GTGTTTACATACAATTGTATTATAAAGCGACTTTGTAAGAATGATAAAGTGGAAGAAGCTTATGAATTGTTGGATGAAAT GATTTTAAGAGGAGTAAAACCAGACACTTGGAGTTATAATGCAATACAAGCTCACCATTGTGATCATTGTGAGGTCAGTA GGGCTCTAAGGTTAATGTCTAGAATGGAAAAGGATAACTGTTTTCCTGATCGACATACATATAACATGGTGCTCAAATTG CTGATTAGGATAGGAAGGTTTGATAAGGCAACTGAAGTTTGGGAGAACATGGGGCATACGAATTTTTATCCTTCTGTCTC AACATATTCTGTCATGATTCATGGTCTCTGTAAGAAGAAGGGAAAGCTAGAGGAGGCATGTAAGTACTTTGAGATGATGA TTGATGAAGGAATACCGCCTTATGTTACTACAGTTGAAATGCTAAGGAATCGGCTCTTGGGTTTAGGGCTTTTGGATCAC ATTGACATACTTGCTGATAAGATGAGGCAGGGTACTTCATGTTCAATCCATGAATTGGCAAATATTATGAGTGGTGTTAG AGCAGCTCATAAGGCTTCAAGGCGTGATGAGACTGATATAGAAAGTGACTGA
Protein sequence (LotjaGi1g1v0210800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFRSLFSRYKNLTSVVCPLFQHKQNCHHFHSLPTPQVFNPLLPDLVSEISRVVSDHRHPHHDLELSLNQFSAQISSDLV EQVLKRCKNLGFSAHRFFLWAKSIPGFQHSVESFHILVEILGSCKQFAILWDFLTEMRESSCCEINSDIFWLIFKAYSRA NLPDGAIRSFLRMDEFGIKPTIHDFDMLLYFLCKRKHVKQAQQFFDQAKSHFLLTAKTYSILISGWGKIGDSGKARELFQ AMLDQGCPVDLLAYNNFLDALCKGGCVDEATNIFHDMLSKRVEPDAFTYSIFIHTYCDANDIHSAFRVLDKMRRCNLLPN VFTYNCIIKRLCKNDKVEEAYELLDEMILRGVKPDTWSYNAIQAHHCDHCEVSRALRLMSRMEKDNCFPDRHTYNMVLKL LIRIGRFDKATEVWENMGHTNFYPSVSTYSVMIHGLCKKKGKLEEACKYFEMMIDEGIPPYVTTVEMLRNRLLGLGLLDH IDILADKMRQGTSCSIHELANIMSGVRAAHKASRRDETDIESD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 47 | 199 | 153 | 5.2E-14 | ||
| PANTHER | 94 | 301 | 208 | 3.1E-80 | – | |
| ProSiteProfiles | 110 | 144 | 35 | 6.533 | ||
| ProSiteProfiles | 146 | 180 | 35 | 8.912 | ||
| Pfam | 154 | 178 | 25 | 1.4 | ||
| ProSiteProfiles | 181 | 211 | 31 | 6.281 | ||
| SUPERFAMILY | 193 | 459 | 267 | 1.6E-6 | – | |
| Gene3D | 210 | 315 | 106 | 4.0E-27 | ||
| ProSiteProfiles | 215 | 249 | 35 | 10.611 | ||
| TIGRFAM | 218 | 250 | 33 | 4.2E-7 | ||
| Pfam | 218 | 247 | 30 | 6.4E-5 | ||
| ProSiteProfiles | 250 | 284 | 35 | 11.805 | ||
| Pfam | 251 | 298 | 48 | 1.6E-13 | ||
| TIGRFAM | 253 | 286 | 34 | 8.4E-8 | ||
| PANTHER | 280 | 493 | 214 | 3.1E-80 | – | |
| ProSiteProfiles | 285 | 319 | 35 | 11.433 | ||
| TIGRFAM | 287 | 321 | 35 | 3.1E-7 | ||
| Pfam | 319 | 361 | 43 | 8.2E-15 | ||
| ProSiteProfiles | 320 | 354 | 35 | 13.625 | ||
| TIGRFAM | 322 | 356 | 35 | 9.9E-11 | ||
| Gene3D | 328 | 522 | 195 | 2.0E-38 | ||
| ProSiteProfiles | 355 | 389 | 35 | 9.065 | ||
| Pfam | 389 | 438 | 50 | 2.3E-13 | ||
| ProSiteProfiles | 390 | 424 | 35 | 10.939 | ||
| TIGRFAM | 392 | 425 | 34 | 1.4E-5 | ||
| ProSiteProfiles | 425 | 460 | 36 | 13.208 | ||
| TIGRFAM | 428 | 460 | 33 | 2.5E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0210800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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