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LotjaGi1g1v0211100.1

Overview

Field Value
Gene ID LotjaGi1g1v0211100
Transcript ID LotjaGi1g1v0211100.1
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Protein COBRA; TAIR: AT5G60920.1 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family; Swiss-Prot: sp|Q94KT8|COBRA_ARATH Protein COBRA; TrEMBL-Plants: tr|A0A072V7V6|A0A072V7V6_MEDTR COBRA-like protein 2; Found in the gene: LotjaGi1g1v0211100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:46351817..46360352) extracted from Lotus japonicus Gifu genome v1.2.

GCACTATCATTTATCACCATTAGATCTCAGCATCTTAGAATATTCTTTGATTGAATGGTGAGGATTTGATGAATGTAAAA AGGGTAAAACTGTAAATGACTTAGACACTTCTTCCCCACCCTTCCCCTCCTTGCTGGAGAAGTGAATCACGGTGACACCT TCCATGAGGTACTACTTCCATCAATTCCATGAACCACCATTTCCATTATTTTTGGGTAAAGACAAAAAAGAAAACCAATG CAGAACACTGGTTGCAAACACATGGGAGAATTTACAAAGCAAACTAACGAGCTCAAAAGAAAAACTCAATTGCTATTCAT GCCTAGCTTTCCCCACCCAGTACAGAACTCGATGTGCAGCTGGAAGTTGAAATTAAAAAAGAAATAAAATTCCACCAGAT GCAAAAAAAATCTCAACCTCATTCAACCCTTCAAATCCCAAATACCCTTGATCAAGCCTCTCAAATACATCCAAACCCAG GAAAAAAATTAAAGCTTTCTGAAACCCATAAAACATAAAAAAACGGATCTGGTTCACCAAGAGAGATTGAGAGCGATCTG GGTCAGAGTTTTGAGTCAAAGCTTCAAAAGGGAAGGGAACCAGACGTGTATTCTGAAACAGTAGGAGAAATTGAGATCTA CTAAAACTCACTGACACTGAAACGTACATGAAGGAGAAGATGAAGAAGAGAACCAAACACACACCCAGACTTCTCCGCTC CTTGCCAATGAGAGCCGGACCAGATTGCCTGATGGTGTTTCAGACCAGATCTACCACTCTCCCCTTCCATCAACTCCTCT GCAATGTCATGCTTTGGTGAGGGGGAACTCTCCCCTTTTATCAAAATTGAAAAGAAAAGAAAAACAAAAGGAGAAATCAA AGGTGATTTTTGACGTTTTCTTCACGGTGGTGCTGATGGTGTTTGTGGGTGTTGTTGGAGATGACCGAAGTGAGAGGAGG GGAAAGTGGGAGGGAGAAAGAGGAGAAGGAAAAAGTCTAAAATACCCACAATAAAAAGTCTGAAATGCCCCGGGTGCACC GGTGGACCAAAATACTAATAGTCCACCCTAGTGGGCACGAGTGTTACAAATATGAAATATCTTTCTTGCATATACATGTC TTTACAACCTCTCTCCAGCCAGCACCGACAGATGGAAGGAGAGCTTCTCAACTTTTATTGATTAGTTTATGTTCCACATG CTCTTTCTGTCGGTGTCATTCTCTATACCCATATTATCCCTTAACTAATTTGCTGTGACAAACAACTTTAGTAATAAAAA ATATAAACCAATAAGTTTCCGTTTTTATTTTAGTCTGCACACCACGCCACACACTGGTAAGAAAAAGTTTCTGTATTTGT CGGTATAAGTGTTTATGCTGCCTACTACAAGGGTATTATTGATATTTGGTGCTGAATGTCTGTATCAGATCCCAACTGTG TGTTTCCAATTTCTTACATAATAAGACAGTGATTATATTGAAGTTTTCATCAAGATTCTTAGTTCATTATTGTTCCTATA GAGCTGAGAGTCCCTTTTAGTGTTGCAGATCTTTAAGTTGAACTAAGTTTTCAAAGCAAATCTACGACCAGAAATGGAGT CTATGAGGTTATCTACAATTGGATCTCGTGGTGGCTTGCCATTCTTGCTCCTGTTGGTGCTTTCTTGCTCCACATTCACT TCTACAGGTAATAGCTATAGCTCTCTCTCAAATAGTCTCTTGTCAATGGAGCTTAAATCTAGTTCTTGGAGGTTTGACTT TTGTGAGTTCTAGTTCTGGTCCTATATCACTGAGTTAATAATGAGTTCCCATTTTCTGTTTTCTCAAAAGTTTGACTCTT TTGATAGAACTATGGTGAAGGAGCTTCATGGTATATTGTAGTGCGTGTTTGGATCAGCGTTTGTCACGATTGATTCTTAG TAAAATTGATTTAAGTAAAAGTGATTGAAAGTAAAGCGATTTATATTTGGATACAATTATGAAAAAGCGATCTTTGTTGA GTAATGATTTGAAATTCAGTTGTAAAATCTCACAATTTGATCTTGTTGAATGCATAAGCTTCTATGAGAAATGTTTTTGG ATCTGAGATTAACTCTTCAAAAGGACTCTCAAACATCAATATTTTCATCTAGAATTGATTTTACTCTACCAGAATTGATT TGTGGGTAGCCAAACACACTACTAATTGTTTCCTTCAATCTCCTTGCTGTCAATTTGGACCATCCCTTCTTTATGTCGGT TCAAATATTCTATTTTTGGCATCTTAGCTGATAGGTAAGAGCTCTTGGGTATTTTCAAATCAGACATGGGGCAAGTGTGA TGTTACTCATGGATACGAATTACACTCACTTATTTTTCTATATTTGTTTGAATCTCCACTTGAAAAACAATTGAGAAAGA TATATGCAGATCTAAGTTGTTAAAACTTTTGCATTGGAGATTACTGAGAATTTCAAACTTACCAATTTTCCCTGCTTGTT CATGTACAGAAGCCTATGATGCACTTGATCCAACTGGCAATATAACAATTAAATGGGATGTCATTAGCTGGACTCCAGAT GGCTATGTTGTAAGTGACCAAAACTACTTCCTTAATGTGATAAAGTTCTAGGAAAAGCATATAGTGGGTATGACTTGCGC AATGGAAACTTCTATGGAATCAGTAAAGACTTTGAATCTGTTTGTATGCGGACTGAAGAATGCTTATTGGAGCTTAGCAA CTAGAAAAGCACTAGATAAGCTCCAATAAGTTTGCTAGTCCGCATTCAAACCGATTCTATGTAAGACTAGGACTTGCTTT TAGCTTGACTGATCTTCTTAGAGTTACATACCTTGTTTGAGAAGGACTTGAAAGGCTGTCTGATTAGGAAATTTTAACAT TTTATCAGCCATTTAACATATTGTACACCGCCATTATTGGACTAAACAATGAATAACTTCATATGTCAAGGAATCAACTG AATTATTTCCATTTGCTTTAAATTCAAATGTAAATGAAATATCGGCCGCTTCTATTTGTTTCTGTTGCTTAATTCTAATT GAGTGTTCTTGCTTGGTTGAGCAGGCTACTGTTACAATGTACAACTTTCAACAGTATCGTCATATTCAGGCCCCTGGATG GTCATTAGGGTGGACATGGGCTAAAAAGGAAGTAATTTGGAACATGATGGGAGGCCAAACTACAGAGCAAGGAGATTGTT CGAAGTTCAAAGCCGGCATACCACATTGTTGTAAAAAGGATCCAACAGTAGTGGATTTATTGCCAGGAACTCCTTACAAC CAGCAGGTTGCAAATTGTTGCAAAGGTGGAGTCTTAAATTCTTGGGCTCAGGATCCAGGCAATGCAGTGAGTTCTTTTCA GATTAGTGTTGGCTCTGCCGGAACAACTAACAAAACGGTCAAATTGCCCAAAAATTTCACCCTCAAAGCACCAGGACCTG GCTATACTTGTGGCCCTGCAAAAAATGTGAGACCGACTAAATATATTACCAGCGACAAGAGGAGAATCACCCAAGCCTTG AGTAAGTTACTTTCAAACTAGTTCACTTAAGCTTTTTAACATGTTCATTTGTCTCTTGTAAACTTTCTTGATAGAACCAA CATCTAGATTTCTAGATATCAGATAAGTAAATAGTATTCTTCGTTATACAAAACTGAGATGACTCACAAGTTATAAAGTT GAACCTCCTTTTGATGTTTTATTATTCTTTTTAACTATGGCAGTTCATGTTTTCCCATTTTCTGAGCTTTCATAGAATAG CCTTTGTGGATGAGATGGATTTAAATTTCATCAACAAAATAATTAGCAATATGGATAATTATTTAGGCTTTACACATTGG TGAGAGTTGAGCATGAAAATCAAATTTTAGCTTCTATTATTAACCTGCATATTTTGTGGCAGTGACCTGGAATGTTACAT GCACATATTCTCAATTCCTGGCTCAAAAGACACCAAGTTGTTGTGTTTCCCTCTCATCCTTCTATAATGACTCTATTGTA AACTGCCCAACCTGCACGTGTGGCTGCAAAAACAAAACAGATCCTGGAAGCTGTGTTAAGTAAGTCTCAATTTATATTTT TACAGATATCTGAAACTTTCTTTCCCTTCTTCTTTTTGTTCTTCAAAGTATGTTTCAATACTATAGTAGCTTTTATTTTT GATCATTTCCTCATTCATGTGATTGATTTATTTTTCTGAATCCATCTTACAGTCCAGACTCCCCACATTTGTCTTCTGTT GTATCATCATCATCAAGCAAAGATATAAATACACCTCTAGTCCAGTGTACCAGTCACATGTGTCCTATTCGAGTGCATTG GCACGTGAAGCTTAATTATAAAGAGTACTGGAGGGTCAAGATCACTATTACAAATTTCAACTACAGAATGAACTACTCAC AATGGAACCTTGTTGTGCAGCACCCCAATTTTGATAATCTTACCGAGATTTTCAGCTTTCAATACAAGTCACTAACACCC TATGAGGGCTTAAGTAAGTTCTTCCTTTCCATATTCCTACATGCTCTTAATTGTGAAGAAAACATTCCAGTTCTAATGTT ATTTCTTCGGATATGTTTTACAGATGATACCGGTATGCTGTGGGGAACGAAGTTCTACAATGATTTTCTTTCTTCAGCTT CTGAAAAAAATCTTGGTAATGTGCAGTCAGAAATCTTATTTAGGAAGGACAAATCAACCTTCACTTTTGATAAGGGATGG GCCTTCCCAAGAAGGATTTATTTCAACGGCGATAACTGTGTTATGCCTCCACCAGATGCCTATCCTTGGCAACCAAATGC AAGTTCGAAACTAGCTTTCTCTCTACTATGTACAGTCATGGCCACTTTGGCATATTTGGTAATCTTATTAAACTAAACAT AGATAATTATCTATGTTGAGACATAAAGATACCTTCTTCTCTTTTGGAATATTGTATACTTCTTTTCTGCACCAGATTCT CAAAGCTGAAGTGAACTCCATTGTAAAAAATGCCTAGGAACTACCCTGGAGCAATAAAAAGTGACAGCTGCATGATTGGT TACCACAAGAATTGTCTCCTATTGGCTTTGATTTACTTTGGGGGTTGATTTTTACCTCCCATAATTTATTTGTAGCTTTT GTGCTGTATAATTATTTAAAGTTATTTGCCTGGATGATTATTATTTTCTCCAATTATAGAATATCCAATTTAGTTTTCAG CGTTGATATGAAGAATTAAAGCAGATATTCTAGGTAGGACTTCTGCTTCCCCTTGTTAAGTTTTTTGTTAACCATTTATG CTCATTTGGCTATTTTGGCAAAATCCAAAAACCAAAGCAAACGGCTTTATCTGTTTAACATATATCTAAAACCACTGTGT AAAGGGAATCCAATATACAGAAACATAACTTGCTGTGATGCAATGTTGTGGGGATCAAGATACTACGATCGGAAGGAGGG AGGAGGGGGTGCAGAAGTATATAAAGTACACATACATATGGTAGTGCACTAGAAAAAATGCAACATTGAAACATGTTAGT GATGACAAGAAAGTCCATCTTGCATATATATCACCCCATCTACATCATCAGTCTGAGCTGTGTAAACTTGATAACTAAGA TGCCAATATTAGACCTCACAGAAGACTCACAACAAAATGAAAAAATGATGTGAAAATGACATAGGCTGCCATCAAAACAG TACTTGGTAATCTATGAGCAGAGTTTGGCAAGAAAGGGTATGAATCAGGAGGTGGCAGCATGCATTCATCACCATTAAAG TAGACCCTCCTAGGAAATGCCCATCCCTGCTTAAGTGTAAATGTGTTCTTGTCCTTCTTCATAAGCACCTCAGACTGAAC ATTCCCCTTAGGCCCAGCTTCCATCAATAGATCATTGTAATATTTCAAACCATAGAACATGCCTGTATCATCTGCATATA TACATATAAACGTAAGTATATGCACATGGTTAAGAAGTATTAAAATATTTTGTCTCTGTTTGATTTCTCATTTCTTGTCT CACCAATAAAATTGTGTCAAGTCATTTAAAAAATGTATGAATATGACAGTTATAACTTTATGCGAGTAGTTTTAAATGAC ATGACAATTTTTATTATTGGAACATGAAATAGGACATCAAACGAGAACAAAGAATTTCAATCCGGTTAAGAAACCTCTTT ATGCCTATGGAGCTATAACACCGAAATTATGTGTTCATTTCAAAGAACTCACTTATGGCCTGATATGGAAGAAGTGGCAA GTACTCAAAGCTATAGACTTGGGTGACATTATTGAGATTGGGATGTTGTACAACAAGAGACCATTGAGTGTAGTTCATTC GATAGTCGAAATTGATGATGGCAATCTTGACCCTCCAATAGTCCTTGTAGTTTTCTTTAATGTGCCAGTGCACCCGAACA TGACACAGGTGGTGTGTGCATCTTAGCAATGGTTTTGGTGTGATATCTGTCTTATGTGTCTTAGTTGTATTTTCTTGCAG GATCTTTGAATCACTCCTGCATGCACATTCATCATGAGAAATCAAAATCAGCATTCTTGTTACCCAATTAAGTACATAAA GTTGGTATGAATTTAATATACTAAGGTGAAACTATAGAACTTTGATCCTCTCCCGCAAAATCTTAACCCTATGTTTATCT TTAATGGCTCAGATTATTTCATGATTAATAAATTTATTTGGACAGGTAGTTAAAAGCATATAGTATTGCTGTTGCAGAAG AATACAGAGAACAGTTGGCCGAAGAGGATACAAAAGGGTGGCTTACGTCACACAAGTATCATTATTCTGGCAACCACAAG CACAAGTTGGGCAAGCTGTCACTTTATCATTGTAGAAAGATGACAAAGAAACACAGCAGCTTGGATTCTTGTAGGCAAGA AACTGTGAATAGGTACATGTCACATTCCAGGACACTGCATAGAAAACCAAAGAATAGATGCAATAAATACTAGGACTCGG GTTCCCTGCCGTTAAGGATAGAGATTCAATGCATTCACGCAATCATGCAATGTGAGCCATGCGATTAAGATCGGCTAGTT CATATATTTCATCAAGAAGTGACCATAGATATAAATTTAAAATATGAGCCATACAAATTTATAAGTGGAATGTTCAGTTA CACTATAGCATGCACAGTTAAGGGATGAAGGGAATTAGTAAGCATACTCAAAGCTTGAGCTTTTCTCCTGTGATCATCTG TGGGGATTACAGTGGATGGAACCATCTTTGCAGGGCCACATGAGTAACCTGGTCCTGGTCCAAGCAATTTGAAGTTCTTG GGGAGTTTCACTGTCTTGTTAGAGGTTCCAGAGAGCCCCACAGCCATCTGAAATGCTGAGACAGTACCTGAAGGGTCCTG ACCCCAGGATGTTAGCACACCCCCTTTGCAGCAGTTGGTGTACTGCATGTTGAAAGATGCTCCTGGTAGCAAGTCAACCA CTTGGGGGTTCCTCTTGCAGCTGTGAGGAATCTTCAACTTGAACTTGGAACAGTCTCCTTGTTCTGTAGCCTGAGCTCCC ATCATGGCCATGATGACTTCTTTCTTTGCCCATGTCCATCCTAGATTCCACCCAGGGTTCATAATGTTCCGGTACAGTTG GAAGTTAAACAATGTCACAGTGGCCTGCCAGAGTTTAATTATAATGATCACTTTGATGATAACTGGACCACTGTTTGGGT GAAATCCAAGTTTCTTTTTAGCCTAAGGGTATCGGTGGCCGATGTGATCTTGAGCTAGTTTAGCTCATTGGTATTCATTC ACATAAAGCCAGTAATTTCTATTTTCTAGAGGCCTGTTGGCATTTGGTTGGAGTTCTAAATTGCAGTTCGAAACCGCAAT TGCGGCTGGAATGTAAAGGGTTTCAAGATCTCCGCATCGGCATCGCAATCGCAGTTTCGAAACCCATATTTGTTCTCAAT TCTGCAGTGCCGCAACCGCAATTTAAAGCTTCAAACCATTACACGGGCATTTACTTTTTCTTCAGTTCAGATATATAGTT AACAATCAATACAAATTAATATAAAATGATCAGAATTTAGAAGTTACCATATAACCATCTGATGTCCAGGACATGATGTC CCATCTTATTGTCACGTTCCCAGTTGGATCCAAAGGATCAAAAGCGTCTACAAGCACAAGACAAAGAAGTTAGAATGAAT CCATGAGAAAATAACATATATATTCTCACTTCTAGTTTCCCATGTTTTGCATATAGGCAAGTAATTTACCAGCAGGAGAG ATTAGAATGAGACATAGAGTAATGAAGGAAACCAACTTCAGCTTCTCAAATGTGCAGCTTTGCTGCTTTTTACCATTATC TAATTCCATGCCTAAAGATGATGTTCACTGAATCACAAGTTCTAATGTGGTACACAATGTTCTAATAATGTGCAAATTTG CTAGTGTGTTTATAGCAAAAAGTGCTTATACCCTTGTAGTTGTTAGGTCCTTGTAATATCATCTTCACATGAAATATTCT GTCTCCCTCTCTTTTATCATTCCCTGGTAATATCTGAGTTGAGGCAAAACATAGAC 

CDS sequence (LotjaGi1g1v0211100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGTCTATGAGGTTATCTACAATTGGATCTCGTGGTGGCTTGCCATTCTTGCTCCTGTTGGTGCTTTCTTGCTCCAC ATTCACTTCTACAGAAGCCTATGATGCACTTGATCCAACTGGCAATATAACAATTAAATGGGATGTCATTAGCTGGACTC CAGATGGCTATGTTGCTACTGTTACAATGTACAACTTTCAACAGTATCGTCATATTCAGGCCCCTGGATGGTCATTAGGG TGGACATGGGCTAAAAAGGAAGTAATTTGGAACATGATGGGAGGCCAAACTACAGAGCAAGGAGATTGTTCGAAGTTCAA AGCCGGCATACCACATTGTTGTAAAAAGGATCCAACAGTAGTGGATTTATTGCCAGGAACTCCTTACAACCAGCAGGTTG CAAATTGTTGCAAAGGTGGAGTCTTAAATTCTTGGGCTCAGGATCCAGGCAATGCAGTGAGTTCTTTTCAGATTAGTGTT GGCTCTGCCGGAACAACTAACAAAACGGTCAAATTGCCCAAAAATTTCACCCTCAAAGCACCAGGACCTGGCTATACTTG TGGCCCTGCAAAAAATGTGAGACCGACTAAATATATTACCAGCGACAAGAGGAGAATCACCCAAGCCTTGATGACCTGGA ATGTTACATGCACATATTCTCAATTCCTGGCTCAAAAGACACCAAGTTGTTGTGTTTCCCTCTCATCCTTCTATAATGAC TCTATTGTAAACTGCCCAACCTGCACGTGTGGCTGCAAAAACAAAACAGATCCTGGAAGCTGTGTTAATCCAGACTCCCC ACATTTGTCTTCTGTTGTATCATCATCATCAAGCAAAGATATAAATACACCTCTAGTCCAGTGTACCAGTCACATGTGTC CTATTCGAGTGCATTGGCACGTGAAGCTTAATTATAAAGAGTACTGGAGGGTCAAGATCACTATTACAAATTTCAACTAC AGAATGAACTACTCACAATGGAACCTTGTTGTGCAGCACCCCAATTTTGATAATCTTACCGAGATTTTCAGCTTTCAATA CAAGTCACTAACACCCTATGAGGGCTTAAATGATACCGGTATGCTGTGGGGAACGAAGTTCTACAATGATTTTCTTTCTT CAGCTTCTGAAAAAAATCTTGGTAATGTGCAGTCAGAAATCTTATTTAGGAAGGACAAATCAACCTTCACTTTTGATAAG GGATGGGCCTTCCCAAGAAGGATTTATTTCAACGGCGATAACTGTGTTATGCCTCCACCAGATGCCTATCCTTGGCAACC AAATGCAAGTTCGAAACTAGCTTTCTCTCTACTATGTACAGTCATGGCCACTTTGGCATATTTGGTAATCTTATTAAACT AA 

Protein sequence (LotjaGi1g1v0211100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MESMRLSTIGSRGGLPFLLLLVLSCSTFTSTEAYDALDPTGNITIKWDVISWTPDGYVATVTMYNFQQYRHIQAPGWSLG WTWAKKEVIWNMMGGQTTEQGDCSKFKAGIPHCCKKDPTVVDLLPGTPYNQQVANCCKGGVLNSWAQDPGNAVSSFQISV GSAGTTNKTVKLPKNFTLKAPGPGYTCGPAKNVRPTKYITSDKRRITQALMTWNVTCTYSQFLAQKTPSCCVSLSSFYND SIVNCPTCTCGCKNKTDPGSCVNPDSPHLSSVVSSSSSKDINTPLVQCTSHMCPIRVHWHVKLNYKEYWRVKITITNFNY RMNYSQWNLVVQHPNFDNLTEIFSFQYKSLTPYEGLNDTGMLWGTKFYNDFLSSASEKNLGNVQSEILFRKDKSTFTFDK GWAFPRRIYFNGDNCVMPPPDAYPWQPNASSKLAFSLLCTVMATLAYLVILLN 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles 1 25 25 5.0
SignalP_EUK 1 33 33 -
Phobius 1 16 16 -
Phobius 1 33 33 -
PIRSF 12 453 442 1.7E-245
Phobius 17 28 12 -
PANTHER 17 449 433 1.8E-260
PANTHER 17 449 433 1.8E-260
Phobius 29 33 5 -
Phobius 34 432 399 -
Pfam 57 220 164 1.8E-73
TMHMM 433 452 20 -
Phobius 433 452 20 -
Phobius 453 453 1 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Cellulose microfibril organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cellulose microfibril, any of the cellulose structures laid down in orthogonal layers in a plant cell wall.
Cellular component Anchored component of membrane The component of a membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0211100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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