Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0211100 |
| Transcript ID | LotjaGi1g1v0211100.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein COBRA; TAIR: AT5G60920.1 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family; Swiss-Prot: sp|Q94KT8|COBRA_ARATH Protein COBRA; TrEMBL-Plants: tr|A0A072V7V6|A0A072V7V6_MEDTR COBRA-like protein 2; Found in the gene: LotjaGi1g1v0211100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:46355123..46359040) extracted from Lotus japonicus Gifu genome v1.2.
GTCTGCACACCACGCCACACACTGGTAAGAAAAAGTTTCTGTATTTGTCGGTATAAGTGTTTATGCTGCCTACTACAAGG GTATTATTGATATTTGGTGCTGAATGTCTGTATCAGATCCCAACTGTGTGTTTCCAATTTCTTACATAATAAGACAGTGA TTATATTGAAGTTTTCATCAAGATTCTTAGTTCATTATTGTTCCTATAGAGCTGAGAGTCCCTTTTAGTGTTGCAGATCT TTAAGTTGAACTAAGTTTTCAAAGCAAATCTACGACCAGAAATGGAGTCTATGAGGTTATCTACAATTGGATCTCGTGGT GGCTTGCCATTCTTGCTCCTGTTGGTGCTTTCTTGCTCCACATTCACTTCTACAGGTAATAGCTATAGCTCTCTCTCAAA TAGTCTCTTGTCAATGGAGCTTAAATCTAGTTCTTGGAGGTTTGACTTTTGTGAGTTCTAGTTCTGGTCCTATATCACTG AGTTAATAATGAGTTCCCATTTTCTGTTTTCTCAAAAGTTTGACTCTTTTGATAGAACTATGGTGAAGGAGCTTCATGGT ATATTGTAGTGCGTGTTTGGATCAGCGTTTGTCACGATTGATTCTTAGTAAAATTGATTTAAGTAAAAGTGATTGAAAGT AAAGCGATTTATATTTGGATACAATTATGAAAAAGCGATCTTTGTTGAGTAATGATTTGAAATTCAGTTGTAAAATCTCA CAATTTGATCTTGTTGAATGCATAAGCTTCTATGAGAAATGTTTTTGGATCTGAGATTAACTCTTCAAAAGGACTCTCAA ACATCAATATTTTCATCTAGAATTGATTTTACTCTACCAGAATTGATTTGTGGGTAGCCAAACACACTACTAATTGTTTC CTTCAATCTCCTTGCTGTCAATTTGGACCATCCCTTCTTTATGTCGGTTCAAATATTCTATTTTTGGCATCTTAGCTGAT AGGTAAGAGCTCTTGGGTATTTTCAAATCAGACATGGGGCAAGTGTGATGTTACTCATGGATACGAATTACACTCACTTA TTTTTCTATATTTGTTTGAATCTCCACTTGAAAAACAATTGAGAAAGATATATGCAGATCTAAGTTGTTAAAACTTTTGC ATTGGAGATTACTGAGAATTTCAAACTTACCAATTTTCCCTGCTTGTTCATGTACAGAAGCCTATGATGCACTTGATCCA ACTGGCAATATAACAATTAAATGGGATGTCATTAGCTGGACTCCAGATGGCTATGTTGTAAGTGACCAAAACTACTTCCT TAATGTGATAAAGTTCTAGGAAAAGCATATAGTGGGTATGACTTGCGCAATGGAAACTTCTATGGAATCAGTAAAGACTT TGAATCTGTTTGTATGCGGACTGAAGAATGCTTATTGGAGCTTAGCAACTAGAAAAGCACTAGATAAGCTCCAATAAGTT TGCTAGTCCGCATTCAAACCGATTCTATGTAAGACTAGGACTTGCTTTTAGCTTGACTGATCTTCTTAGAGTTACATACC TTGTTTGAGAAGGACTTGAAAGGCTGTCTGATTAGGAAATTTTAACATTTTATCAGCCATTTAACATATTGTACACCGCC ATTATTGGACTAAACAATGAATAACTTCATATGTCAAGGAATCAACTGAATTATTTCCATTTGCTTTAAATTCAAATGTA AATGAAATATCGGCCGCTTCTATTTGTTTCTGTTGCTTAATTCTAATTGAGTGTTCTTGCTTGGTTGAGCAGGCTACTGT TACAATGTACAACTTTCAACAGTATCGTCATATTCAGGCCCCTGGATGGTCATTAGGGTGGACATGGGCTAAAAAGGAAG TAATTTGGAACATGATGGGAGGCCAAACTACAGAGCAAGGAGATTGTTCGAAGTTCAAAGCCGGCATACCACATTGTTGT AAAAAGGATCCAACAGTAGTGGATTTATTGCCAGGAACTCCTTACAACCAGCAGGTTGCAAATTGTTGCAAAGGTGGAGT CTTAAATTCTTGGGCTCAGGATCCAGGCAATGCAGTGAGTTCTTTTCAGATTAGTGTTGGCTCTGCCGGAACAACTAACA AAACGGTCAAATTGCCCAAAAATTTCACCCTCAAAGCACCAGGACCTGGCTATACTTGTGGCCCTGCAAAAAATGTGAGA CCGACTAAATATATTACCAGCGACAAGAGGAGAATCACCCAAGCCTTGAGTAAGTTACTTTCAAACTAGTTCACTTAAGC TTTTTAACATGTTCATTTGTCTCTTGTAAACTTTCTTGATAGAACCAACATCTAGATTTCTAGATATCAGATAAGTAAAT AGTATTCTTCGTTATACAAAACTGAGATGACTCACAAGTTATAAAGTTGAACCTCCTTTTGATGTTTTATTATTCTTTTT AACTATGGCAGTTCATGTTTTCCCATTTTCTGAGCTTTCATAGAATAGCCTTTGTGGATGAGATGGATTTAAATTTCATC AACAAAATAATTAGCAATATGGATAATTATTTAGGCTTTACACATTGGTGAGAGTTGAGCATGAAAATCAAATTTTAGCT TCTATTATTAACCTGCATATTTTGTGGCAGTGACCTGGAATGTTACATGCACATATTCTCAATTCCTGGCTCAAAAGACA CCAAGTTGTTGTGTTTCCCTCTCATCCTTCTATAATGACTCTATTGTAAACTGCCCAACCTGCACGTGTGGCTGCAAAAA CAAAACAGATCCTGGAAGCTGTGTTAAGTAAGTCTCAATTTATATTTTTACAGATATCTGAAACTTTCTTTCCCTTCTTC TTTTTGTTCTTCAAAGTATGTTTCAATACTATAGTAGCTTTTATTTTTGATCATTTCCTCATTCATGTGATTGATTTATT TTTCTGAATCCATCTTACAGTCCAGACTCCCCACATTTGTCTTCTGTTGTATCATCATCATCAAGCAAAGATATAAATAC ACCTCTAGTCCAGTGTACCAGTCACATGTGTCCTATTCGAGTGCATTGGCACGTGAAGCTTAATTATAAAGAGTACTGGA GGGTCAAGATCACTATTACAAATTTCAACTACAGAATGAACTACTCACAATGGAACCTTGTTGTGCAGCACCCCAATTTT GATAATCTTACCGAGATTTTCAGCTTTCAATACAAGTCACTAACACCCTATGAGGGCTTAAGTAAGTTCTTCCTTTCCAT ATTCCTACATGCTCTTAATTGTGAAGAAAACATTCCAGTTCTAATGTTATTTCTTCGGATATGTTTTACAGATGATACCG GTATGCTGTGGGGAACGAAGTTCTACAATGATTTTCTTTCTTCAGCTTCTGAAAAAAATCTTGGTAATGTGCAGTCAGAA ATCTTATTTAGGAAGGACAAATCAACCTTCACTTTTGATAAGGGATGGGCCTTCCCAAGAAGGATTTATTTCAACGGCGA TAACTGTGTTATGCCTCCACCAGATGCCTATCCTTGGCAACCAAATGCAAGTTCGAAACTAGCTTTCTCTCTACTATGTA CAGTCATGGCCACTTTGGCATATTTGGTAATCTTATTAAACTAAACATAGATAATTATCTATGTTGAGACATAAAGATAC CTTCTTCTCTTTTGGAATATTGTATACTTCTTTTCTGCACCAGATTCTCAAAGCTGAAGTGAACTCCATTGTAAAAAATG CCTAGGAACTACCCTGGAGCAATAAAAAGTGACAGCTGCATGATTGGTTACCACAAGAATTGTCTCCTATTGGCTTTGAT TTACTTTGGGGGTTGATTTTTACCTCCCATAATTTATTTGTAGCTTTTGTGCTGTATAATTATTTAAAGTTATTTGCCTG GATGATTATTATTTTCTCCAATTATAGAATATCCAATTTAGTTTTCAGCGTTGATATGAAGAATTAAAGCAGATATTC
CDS sequence (LotjaGi1g1v0211100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTCTATGAGGTTATCTACAATTGGATCTCGTGGTGGCTTGCCATTCTTGCTCCTGTTGGTGCTTTCTTGCTCCAC ATTCACTTCTACAGAAGCCTATGATGCACTTGATCCAACTGGCAATATAACAATTAAATGGGATGTCATTAGCTGGACTC CAGATGGCTATGTTGCTACTGTTACAATGTACAACTTTCAACAGTATCGTCATATTCAGGCCCCTGGATGGTCATTAGGG TGGACATGGGCTAAAAAGGAAGTAATTTGGAACATGATGGGAGGCCAAACTACAGAGCAAGGAGATTGTTCGAAGTTCAA AGCCGGCATACCACATTGTTGTAAAAAGGATCCAACAGTAGTGGATTTATTGCCAGGAACTCCTTACAACCAGCAGGTTG CAAATTGTTGCAAAGGTGGAGTCTTAAATTCTTGGGCTCAGGATCCAGGCAATGCAGTGAGTTCTTTTCAGATTAGTGTT GGCTCTGCCGGAACAACTAACAAAACGGTCAAATTGCCCAAAAATTTCACCCTCAAAGCACCAGGACCTGGCTATACTTG TGGCCCTGCAAAAAATGTGAGACCGACTAAATATATTACCAGCGACAAGAGGAGAATCACCCAAGCCTTGATGACCTGGA ATGTTACATGCACATATTCTCAATTCCTGGCTCAAAAGACACCAAGTTGTTGTGTTTCCCTCTCATCCTTCTATAATGAC TCTATTGTAAACTGCCCAACCTGCACGTGTGGCTGCAAAAACAAAACAGATCCTGGAAGCTGTGTTAATCCAGACTCCCC ACATTTGTCTTCTGTTGTATCATCATCATCAAGCAAAGATATAAATACACCTCTAGTCCAGTGTACCAGTCACATGTGTC CTATTCGAGTGCATTGGCACGTGAAGCTTAATTATAAAGAGTACTGGAGGGTCAAGATCACTATTACAAATTTCAACTAC AGAATGAACTACTCACAATGGAACCTTGTTGTGCAGCACCCCAATTTTGATAATCTTACCGAGATTTTCAGCTTTCAATA CAAGTCACTAACACCCTATGAGGGCTTAAATGATACCGGTATGCTGTGGGGAACGAAGTTCTACAATGATTTTCTTTCTT CAGCTTCTGAAAAAAATCTTGGTAATGTGCAGTCAGAAATCTTATTTAGGAAGGACAAATCAACCTTCACTTTTGATAAG GGATGGGCCTTCCCAAGAAGGATTTATTTCAACGGCGATAACTGTGTTATGCCTCCACCAGATGCCTATCCTTGGCAACC AAATGCAAGTTCGAAACTAGCTTTCTCTCTACTATGTACAGTCATGGCCACTTTGGCATATTTGGTAATCTTATTAAACT AA
Protein sequence (LotjaGi1g1v0211100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESMRLSTIGSRGGLPFLLLLVLSCSTFTSTEAYDALDPTGNITIKWDVISWTPDGYVATVTMYNFQQYRHIQAPGWSLG WTWAKKEVIWNMMGGQTTEQGDCSKFKAGIPHCCKKDPTVVDLLPGTPYNQQVANCCKGGVLNSWAQDPGNAVSSFQISV GSAGTTNKTVKLPKNFTLKAPGPGYTCGPAKNVRPTKYITSDKRRITQALMTWNVTCTYSQFLAQKTPSCCVSLSSFYND SIVNCPTCTCGCKNKTDPGSCVNPDSPHLSSVVSSSSSKDINTPLVQCTSHMCPIRVHWHVKLNYKEYWRVKITITNFNY RMNYSQWNLVVQHPNFDNLTEIFSFQYKSLTPYEGLNDTGMLWGTKFYNDFLSSASEKNLGNVQSEILFRKDKSTFTFDK GWAFPRRIYFNGDNCVMPPPDAYPWQPNASSKLAFSLLCTVMATLAYLVILLN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 25 | 25 | 5.0 | – | |
| SignalP_EUK | 1 | 33 | 33 | - | – | |
| Phobius | 1 | 16 | 16 | - | – | |
| Phobius | 1 | 33 | 33 | - | – | |
| PIRSF | 12 | 453 | 442 | 1.7E-245 | ||
| Phobius | 17 | 28 | 12 | - | – | |
| PANTHER | 17 | 449 | 433 | 1.8E-260 | ||
| PANTHER | 17 | 449 | 433 | 1.8E-260 | – | |
| Phobius | 29 | 33 | 5 | - | – | |
| Phobius | 34 | 432 | 399 | - | – | |
| Pfam | 57 | 220 | 164 | 1.8E-73 | ||
| TMHMM | 433 | 452 | 20 | - | – | |
| Phobius | 433 | 452 | 20 | - | – | |
| Phobius | 453 | 453 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cellulose microfibril organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cellulose microfibril, any of the cellulose structures laid down in orthogonal layers in a plant cell wall. | ||
| Cellular component | Anchored component of membrane | The component of a membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. |
Expression pattern of LotjaGi1g1v0211100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…