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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0212000 |
| Transcript ID | LotjaGi1g1v0212000.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transducin/WD40 repeat protein; TAIR: AT5G60940.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q8L4J2|CTF50_ARATH Cleavage stimulation factor subunit 50; TrEMBL-Plants: tr|G7IGS9|G7IGS9_MEDTR Cleavage stimulation factor 50 kDa subunit; Found in the gene: LotjaGi1g1v0212000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:46671896..46679818) extracted from Lotus japonicus Gifu genome v1.2.
GTTTCCTATGGTTTCCAATGCCAAATCGCCTAATGAACGAAGAAGAGGACACAGCAAAGTGGCGTCATTTTTAAAACGCA TTGAAAGTGGCGGCAGCAAAACAAAGCGATGAGGAAGCAACAGCTCCTTCAATTTAACAGCTAACCAAATCAATAGATTA GATTAGATTCTAGGGTTTCAGATTCGAGATCAATCCTTTGTTTTTCTCTGTCAGAATCCATGGATAACAACAGTAACTCA GACCAAATTGTACTCGATGGCAAACTCTACAGACTCCTCAATTCTCTGATCGTCGCTCATCTTCGTGACAACAATCTCAC TCAGGTTCAAACCTCCCTCGCATTCATTTTCACCTATTTGCTCCATTTTCAGCTACTTGAAAATTGAAATCGTTGTTTTC ATCAATCAGGCTGCAACTGCTGTTGCTTCAGCAACCATGTCACCACTGAATGTAGAAGCACCTCCCAACAGGCTTCTTGA GCTCTTTGCTAAGGTCCATACAATACATTTACAATTTCGTAGCGGTAGACATATTATATATTAGTCCTTGATAATGCAAA AATTTCTCAAATGGTGGTCATGTTGTTAGTTACTAAACATGAGATAATTGTTATTGAAGATATTTGTGATTTCTAGAGAC TAGGTTGAAGCTTTTACATTCTCGAGGACTAGTGTGTTAGTTCCGCGAAGTCTTACTTGTAGGAATTTCCGGAGTTACTC CTTTCGTATGTGTAATTCAATCTATACCTTTTATTTGAGCATGAGGAAGCTTTGTTGTTTTAAGGAAATAACAGGGTCTT GCAGTGGAAAAAGATGATGTGTCAAGAAAGACTTCATCTTCTCCCTTCCGCGATTTGGGTGCATCATTCCCAGTGCCTCG TCCTGGCGCAACAGCCATTGATTTCAGGCAAATTTTTTACACTTGTTCTGTGGTTTTGGCTGCTCTCCTTTTGCATTTTA ATTTAATGGAACAGCATTTCAAGTGTGTTTATTTTGAAGTCGAATAGAATTCTCTTTTTTTACTTCAGTACATTTCGGTC AACCTTCATAGGAGGTAGATGGCTTCTATTATAAACCTTCCAGGTATAAAACTAAATTCATTTTCTACTATCGTAGTCTC TTCCCGTAATCTATGTTCAATCATCTTTCCCATAATTTCATATTGTGACTCATAAGTTTTATCCCCATATAGTTACCGCA ATTTGAATATCCCCTTGCTTTTTATATAGTACATCTCCTCCATGCATCTGCCATTTGTTTAGATCTCATTGAACAACCTA GTGAGCTAACTGATACCTTGGTCTTCTACACATTTCCAAACTTCAATAGGGATATTATCAAGACCTAGTGCTTTACCATT ATCCATATGCTTAAGAACATCTTTAACTTCTCTGACTCGAATTCTACGATAGTAAGCCAGATTTTGCTCATCCTCTCCCA CTACTAAGCCTTCCATGTTATAGTTTGATCATTGTCCATCATTGAAAATTTTGTTGAAGTAATTCTTCTGTCTCTCTCCA ATACCTTGATCAGTAACCAAAATTGTTCCCTCTTCATCTTTAATACATCTTACTTGATCCAAATCTCTTGGTTTTCTTTC TCAGTTTTTGGCAAGCTTATATATTTTTCGTTTTCCATTTTTTTGTCCTAAAGATCTCTATAAAGCTTCTCGTAGGTCAC GGATCGTGCGTCACTCACAGCTTTCACAACATCGTGCGTTGTCGCGTTCGTGTAAAGCCTTAAAAAAACACAACATTTTA TATTTTACCTTTTCTTTCACACTATCATTCCACCACCAAGACTCCTTTTTCTTTTGGTAAGCCCAAGACTCCTTATCTCT CAATCCAAAACCTTTAGATACACCCAATACTTCTTTGGCAACCCTCCTAACCTTCTTATATATACTCCCAAATGAGATTA ACATCACCTTGTGCCTCCCAGTTACCTTTCTCCGCAATTCCCTTAAAATTCAAAAGTTTCTCTCCCTTGAGCTGCCATAA CTTAATTCTTGGGTTTGTAACTCGTCGAGTTTTCTGATTATGGCTCTTAAAACGAACATCAAGGACCAAAACTCTATGTT GTGCAGTCAAGCTCTCTCCCAATATTACCTTGCAATCCTTCCAAACCCTATTATCTAAGCTCCTTACAAAAAAGATGTCA ATTTGTGACCTTGAGGTCCTGCTTTTATATGTGATGGGATGTTCCTCTTGCTTTTTAAATTAGTGTTTAAAATCTTGAGG TCATGCGATGGAAAAATCTAAAATAGGCTGCCCTTTCTCATTTAACTTTCCAAAACCAAAACCTCCATGAACTCGAGTAA AAGGCCCTGCCTCTCAATTGACGTGTTCGTTTAGATCACCACCTATAAACAACTTCTCTTCTTGTGGGATGCCTTGAACG ACACTCTCCAAATCCTCCCAAAACTTTTCTTTCAAAAAATCTTCTGATCCTACTTGAGGGACATAAGCACTAATGATATT GATAGTCTCTTGAGCCACAAATAATTTTGAAGATCAGTTTGGGTCCTAACCTTTTGACATTCACTACATTCTTTTTCCAG TTGTCCACAATAATACCACGCCATTCCTTCCTCTGACATTCCTGGTGTACTAAAGCTTAAATCTTGTAGTGTCTAGCTCC TTAGATTTTTCCCCAACCCATGTAGTTTCTTGAAGGCACATTATATTAATCCTTCTTTGACTCATAATGTCCACCACCTC CATAGATTTACCTGTGAAAGTACCAATATTCCAAGAACCAAACCTAATCAAGCATTCCTGGGATAGCTTCTTTACCACAT CCGCCTAGGAAAATTTGAAGACCCTTGCTCATTTAACATTGCATCCTTGTGCCAATGCAACGACTCTAGCCTATTTAAAC TGTACTCGACCTAGCATTAGCACAAATCTGTAACGTTTGATCCATATTTAAGATAATGGTCAGTTTTATGTTAGCTTTCG TAGGCTTAACACAATCTTCCTCCTTTACTCGGACTTAGGACTTTCTATGACAAGAGTTTCATCAAGCATAATTTGTTATA TTTAATTTTGGTCTCATGCTAGTAGTAACAATACTATGTTCCTTCATTTTCATATCATAAATGAGATAACGGTAATCTTA ATTCATCCTTTGGTGCTATGCTCTAAAAATGAACCCTGAAAAATTGCATTTTGTTATAACAGCTTTGTGCCAGATATAAA AGGTTCATCCAAGAGCTTCCCAAAGCATGAGACACGACATCTTTCAGAACACAAGGTATGTAATATGCTTTGATAACTTG TAAGTTCCTACAGTATCAATTTTAATTTCTTAATATCATGCAAACCCTACTAATAAGTATTAGCTTTCTAATTACCGGTG TTTTTGGACTGATTGGCTTAATTTCTAGAATATTGTCAGATGTGCTAAGTTTAGTCCTGATGGAAGGTTTGTTGCCACTG GAAGTGCAGATACATCAATAAAGCTATTTGAGGTGATGATGATTTATTGTTAAGGTTAGATGTTTTGCTCTCTCTTTGAC ATGACTTTCGAACTTATGCGTTCATTTATTTGGCAGGTTTCAAAGATCAAGCAGATGTTGCTTCCTGAAGCAAAGGATGG TCCTGTGCGGTCCGTCATACGAACATATTATGACCATATACAAGTATACTGGCATTTCTCCAAGTTCTTTTGAATTTATA ACGTTGAACTGTTTCTTCTACCCCAAAATTCGATATTTAGATGATATAAAACCAATAATTGACTTCTGCGCTACTATTGA TGTTGACACAGCTTCGTGATAGGAATGTGATTTCTAACATGCCAAATAACTAGTTTGTTTGATTTGAAAATATTATAGAT TGCTAACTAGCCATTTGAAATCTAACAATATTGAACATTTTAAGGATACTAGATAGGCAGGTGCAAGGTTAGCATACCTT TCTCTGAAAAATAGAGCATCAGCTTATGGTGGTCAGCAATACTTCTGCGCTACTATTGATGTTGACACAACTTCATGATA GGAATGTGATTTCTAACATGCCAAATAACTAGTTTCTTTGACTTTGGAAATATTGTAGATTGCTAATTAATCATTTGAAA TCTAACAATATTGAACATTTTAAGAATACTAGATAGGCAGGTGCAAAGTTAGCATAACTTTCTCTGAAAAATAGAGCATC AGCTTATGATGGTCAGCAAATTTACTAGTAACTAAATTACATGCTTTTTTTATGATATTTATTCTTTTCAAGTATATTGC ACCAGATTGTGGAAGTTCATAATTCAAAATATGTTAACTTAATGAATTTACTTAACACAAACATTATATATCACCGTGCC AACTTCTATTTGTCTTTGTTGTAGTAGAGGTTTTTTAACCAACGTGAAGCTTGCTCTTACATTGATGAGTTTTTGCAGAT ACTTCTTTTCACATATCGCATTAGGCATTTACTTTTGAAAATTTAAAGTTTGTAAAATAATCTTGATAAACTATCCTTGT TTATTTAACTTTTTATATAACAAAACTGCAGCCAATAAATGATTTGGATTTTCATCCGCAAGGTACTATCCTGATTTCTG GAGCCAAAGATCAAACAATAAAGTACGATCTCTTACAGTATAACTCTGTAATTTTGTTCTGTATTATGCATCTCATCTGT ACTCCTTTTTCAAGTTTCTGCGTTCTGCCCTTTTTCTTTTGGAAATGCTCTTATTCTTGTTTAACATTGTTTAGGTTTTT TGATATTTCAAAAACCAATGCAAAGAGATCATCCAGGGTTATCCAGGTTCGGCTCTACTGCATTTATAGTATAAGCAACA AATAGCAAATATAAGAATTGAGCATAAACTTCCATTCTTGTTCGATTATGTTCTGCAGGACACACACAATGTTCGCTCTG TTTCTTTTCACCCCTCTGGGGATTTTCTGCTGGCTGGTATTTATTTTTATCAGATCTTTCTTGCTTATCATCTCTAGTGA TATTATTTTCTGTAATCCCACTGATTCAATCTCCAATTCCAAATTCTTGTATTTCTTAATTGTGTGTGCAAATTTGCAAT TACAAATCCTGCGCTGATATATTTGTTGTGGAGCAATTTTCATTGTATATTTCTGTTAGCTTAGGAAATGGCTCAGTCAA TACTTCCTTGTCCTATTTTCTATGAATCCACCCTGATTTCTGAGTAGGCAATAACTCTGCATTCTGGAATTTGAATGATT TTCTCTCTTAAACCACTGATATTGAGTGCCAGGGGAAAGCCTGTCTTTGTCTCTAAATCAACTTCCAATCCGCATCCTAG TTTTCTTCCTTGATTTTTTCTCACAACAAAAGTAAAGATGATAAATATTAACTTTTGACAGGGACTGATCATGCAATTCC ACATTTGTATGATATAAACACCTTTCAGTGTTATCTATCAGCAAATCTCCTGGATATTAGTCCTAATGGAGCCATAAACC AGGCATGTAAATTCTCTCTTGTTCACAAACTGATTGACCTATGTTTTACTTTTATCGACGTTGAAGTGATGCCAATCATT TCTTGCCTGACCTATATAGGTCAGATATTCTTCTACAGGTGCCATGTATGTTACAGCTTGTAAAGATGGTGCTATTCGGT TATGGGATGGCATCACCGCCAATTGTGTGCGCACAATAATTGGAGCACATGGAACAGCTGAGGCTACCAGTGCAATTTTT ACAAGAGATCAAAGGTATAAATGCATTTTAGTGCAAATGACACTCACATGCATTGATGCACTAATAGACCATGACAATGA TAGTGCCACCGCCATCATGAGTTATGTCTCGATAGTGAATAGCATGACTAGCGGTTTGTCTTCAGCCATGTATTTGTGGA CCTCCGAACCTTTGATGTCTAAAGAAATTACAATGGAGATTTGATAGGATTGCTAGTCAAGTTAGGCCCCCTATTAGGGA AGTTTATGCGAGAAGGAACCGAGCTACATAGCTCTTAGCTCTTGTGATTCTGTTTTGCTGAGCTGTGCCAGTTGTAATTC CTAGCAGATTAGTTAGGAATGATTAGTATAAATAAGTGAAGCTTAGTCTTCATTAGTTAGGCAGTTATAGAGTTGATTGG TTAGAACTGAATTGCCCTGCAATTCAGTTGGCATCTCTGTAACCGTTTGCTATCTTGCAACTGTTTTCTATCTCAGGTTT CAATACTCAGTTCTATAGTGTTCATCTTCTTCCTCAGAATTCTTGGTTCTCTCTGGTTCACAGTACCAGATCTATCAAGA TTTTTTCTTTGGGGCAAGGGACAGGGGGATGGGTGTGTGTGCAGTGAATAAGGGTGTGATTGACTTTGAAGCCGAAGCAA AAACTAATTTTTGCTTTAAAGTGGGTGCTTCGCTTGCTGTTCCAAACCTTAATTAGTCTTAACATCAGAGTTAACAATCT CCGATCAAAATCCTGTTTACTACAGCACACATTAAGAGCTTATGTTTTATTTGAACTATACAATTTTTAGCTGAAAGCGA AATCACCAACCCCCCCCCCCCCCCTCTCTTGGGAATAAAAAGAAGATAAAAGTAATTCCATTCTTTACCAGTCCATTGCT TTTGATGCAACGGACATTGACAGTTGACAAACTTTTTATACTTCGCTGTAGTTTCCTGATAGGCTTAAATTGGTTTAGCA ATATAACAGTCTGTTTTCTAGGTTTGTCCTCTCCTGCGGGAAGGATTCTACCATAAAGCTTTGGGAAGTCGCCTCTGGAA GATTAGTCAAACAGTATCTCGGAGCTACACATACACAGCTAAGATGCCAGGTAAATACATGTGTTCCGTTTAGTATTTTT TATAAATTAATCTTGGTCAATTCATATACGATGTTTGTGGTATAAGTCATGCAAATTCATGGATTTTTACCTTGCACTGA GCGATGTTTGTGTTTTTGTTTTCTTCTCCTTTTTTCGGTATCTAGCTTTGTCCAACATTTATAAAAATAGTTCTTGATAT ATTTCTCCCAGTCACAAGGAATCATTGTTTGTCAATTGCCACTATCATTGGAATTAAAAAGCTTTAGTGAAAACTTCAAT AGATACTCACTCATCCATAGGTTGTATTTTCGGGTACATTGGGATGTATTAGTTATCCTCATTCCTTAGTCCACGTGAAA TTCTCATACCAATTACCATTCTATGAACCCTTTTTTGCAGGCAATGTTTAATGAGACAGAAGAATTTATTCTTTCTGTAG ATGAATTCAGCAATGAGGTTTGTTCAGTTGTCTACTGTGTGCTAACGTTAGCTTGATCAAATGAATATTATTTGAGCTAT CTGGTATACTTTTGCAGATCGTTATCTGGGATGCGATAACATCAGAAAAAGTAGCAAAGTGGCCTTCTAATCATGTCGGT GCACCCCGCTGGCTTGAACACTCACCAGTAGAGTCTGCTTTTATTTCATGTGGAACTGATAGGTCAGTTCGGTTTTGGAA GGAAAATCTATAGGTACAAAGTGAAGGAGTTCAAAGATAGACGCTAAATAACGATCCTCTTTCTCACACTTTGAATTTTA CCCTGTAACATCAGTAAACGCATTCACAACATGAAATTGGTGGATAATCTTTTAGCAGTGTTTGAGTGAGAATCAAATTG ATTGATGTTCTAAAACTCAATCTTTAAATCTTTTTGTTGATCTTAGTTTGGTGTCTATGGGTGAGCAGAAATACTGAATC AGCCCGAAACCGAGCAGTAATAAGTTTTGAAAATCATAAGATTTGCCCAAATTTTGCCTGAACAAGATCCCATCTCACTA ACAGTAGTCATTTTTTGGTGCTTGCTGTGGTACCTTCAGTCAGATCAAGGTGTGGTATTTGAAATGATGTGTACCAATAG AAAGCATGTTGTAATTGAGTCAGTATTCATGTATTTGTATTAATACTTTCTTTTAAAATTTAAGTGTTAATATTATGATC ATT
CDS sequence (LotjaGi1g1v0212000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATAACAACAGTAACTCAGACCAAATTGTACTCGATGGCAAACTCTACAGACTCCTCAATTCTCTGATCGTCGCTCA TCTTCGTGACAACAATCTCACTCAGGCTGCAACTGCTGTTGCTTCAGCAACCATGTCACCACTGAATGTAGAAGCACCTC CCAACAGGCTTCTTGAGCTCTTTGCTAAGGGTCTTGCAGTGGAAAAAGATGATGTGTCAAGAAAGACTTCATCTTCTCCC TTCCGCGATTTGGGTGCATCATTCCCAGTGCCTCGTCCTGGCGCAACAGCCATTGATTTCAGCTTTGTGCCAGATATAAA AGGTTCATCCAAGAGCTTCCCAAAGCATGAGACACGACATCTTTCAGAACACAAGAATATTGTCAGATGTGCTAAGTTTA GTCCTGATGGAAGGTTTGTTGCCACTGGAAGTGCAGATACATCAATAAAGCTATTTGAGGTTTCAAAGATCAAGCAGATG TTGCTTCCTGAAGCAAAGGATGGTCCTGTGCGGTCCGTCATACGAACATATTATGACCATATACAACCAATAAATGATTT GGATTTTCATCCGCAAGGTACTATCCTGATTTCTGGAGCCAAAGATCAAACAATAAAGTTTTTTGATATTTCAAAAACCA ATGCAAAGAGATCATCCAGGGTTATCCAGGACACACACAATGTTCGCTCTGTTTCTTTTCACCCCTCTGGGGATTTTCTG CTGGCTGGGACTGATCATGCAATTCCACATTTGTATGATATAAACACCTTTCAGTGTTATCTATCAGCAAATCTCCTGGA TATTAGTCCTAATGGAGCCATAAACCAGGTCAGATATTCTTCTACAGGTGCCATGTATGTTACAGCTTGTAAAGATGGTG CTATTCGGTTATGGGATGGCATCACCGCCAATTGTGTGCGCACAATAATTGGAGCACATGGAACAGCTGAGGCTACCAGT GCAATTTTTACAAGAGATCAAAGGTTTGTCCTCTCCTGCGGGAAGGATTCTACCATAAAGCTTTGGGAAGTCGCCTCTGG AAGATTAGTCAAACAGTATCTCGGAGCTACACATACACAGCTAAGATGCCAGGCAATGTTTAATGAGACAGAAGAATTTA TTCTTTCTGTAGATGAATTCAGCAATGAGATCGTTATCTGGGATGCGATAACATCAGAAAAAGTAGCAAAGTGGCCTTCT AATCATGTCGGTGCACCCCGCTGGCTTGAACACTCACCAGTAGAGTCTGCTTTTATTTCATGTGGAACTGATAGGTCAGT TCGGTTTTGGAAGGAAAATCTATAG
Protein sequence (LotjaGi1g1v0212000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDNNSNSDQIVLDGKLYRLLNSLIVAHLRDNNLTQAATAVASATMSPLNVEAPPNRLLELFAKGLAVEKDDVSRKTSSSP FRDLGASFPVPRPGATAIDFSFVPDIKGSSKSFPKHETRHLSEHKNIVRCAKFSPDGRFVATGSADTSIKLFEVSKIKQM LLPEAKDGPVRSVIRTYYDHIQPINDLDFHPQGTILISGAKDQTIKFFDISKTNAKRSSRVIQDTHNVRSVSFHPSGDFL LAGTDHAIPHLYDINTFQCYLSANLLDISPNGAINQVRYSSTGAMYVTACKDGAIRLWDGITANCVRTIIGAHGTAEATS AIFTRDQRFVLSCGKDSTIKLWEVASGRLVKQYLGATHTQLRCQAMFNETEEFILSVDEFSNEIVIWDAITSEKVAKWPS NHVGAPRWLEHSPVESAFISCGTDRSVRFWKENL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 433 | 426 | 1.5E-211 | – | |
| Gene3D | 107 | 434 | 328 | 2.5E-59 | ||
| SUPERFAMILY | 113 | 431 | 319 | 1.83E-59 | ||
| SMART | 114 | 153 | 40 | 3.1E-7 | ||
| CDD | 117 | 431 | 315 | 5.44572E-52 | – | |
| Pfam | 118 | 152 | 35 | 2.9E-7 | ||
| ProSiteProfiles | 121 | 162 | 42 | 12.413 | ||
| ProSiteProfiles | 121 | 434 | 314 | 36.49 | ||
| SMART | 170 | 209 | 40 | 2.0E-7 | ||
| Pfam | 173 | 209 | 37 | 4.6E-6 | ||
| ProSiteProfiles | 177 | 218 | 42 | 12.146 | ||
| SMART | 215 | 253 | 39 | 3.8 | ||
| Pfam | 225 | 248 | 24 | 0.016 | ||
| SMART | 262 | 299 | 38 | 0.035 | ||
| Pfam | 273 | 299 | 27 | 0.1 | ||
| ProSiteProfiles | 274 | 308 | 35 | 10.074 | ||
| SMART | 302 | 343 | 42 | 8.1E-4 | ||
| Pfam | 304 | 342 | 39 | 0.0016 | ||
| ProSiteProfiles | 323 | 352 | 30 | 10.107 | ||
| ProSitePatterns | 330 | 344 | 15 | - | ||
| SMART | 391 | 431 | 41 | 0.8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0212000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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