Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0212000 |
| Transcript ID | LotjaGi1g1v0212000.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Wd40-repeat-like protein; TAIR: AT5G60940.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q8L4J2|CTF50_ARATH Cleavage stimulation factor subunit 50; TrEMBL-Plants: tr|I1KD31|I1KD31_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0212000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:46671927..46679742) extracted from Lotus japonicus Gifu genome v1.2.
AATGAACGAAGAAGAGGACACAGCAAAGTGGCGTCATTTTTAAAACGCATTGAAAGTGGCGGCAGCAAAACAAAGCGATG AGGAAGCAACAGCTCCTTCAATTTAACAGCTAACCAAATCAATAGATTAGATTAGATTCTAGGGTTTCAGATTCGAGATC AATCCTTTGTTTTTCTCTGTCAGAATCCATGGATAACAACAGTAACTCAGACCAAATTGTACTCGATGGCAAACTCTACA GACTCCTCAATTCTCTGATCGTCGCTCATCTTCGTGACAACAATCTCACTCAGGTTCAAACCTCCCTCGCATTCATTTTC ACCTATTTGCTCCATTTTCAGCTACTTGAAAATTGAAATCGTTGTTTTCATCAATCAGGCTGCAACTGCTGTTGCTTCAG CAACCATGTCACCACTGAATGTAGAAGCACCTCCCAACAGGCTTCTTGAGCTCTTTGCTAAGGTCCATACAATACATTTA CAATTTCGTAGCGGTAGACATATTATATATTAGTCCTTGATAATGCAAAAATTTCTCAAATGGTGGTCATGTTGTTAGTT ACTAAACATGAGATAATTGTTATTGAAGATATTTGTGATTTCTAGAGACTAGGTTGAAGCTTTTACATTCTCGAGGACTA GTGTGTTAGTTCCGCGAAGTCTTACTTGTAGGAATTTCCGGAGTTACTCCTTTCGTATGTGTAATTCAATCTATACCTTT TATTTGAGCATGAGGAAGCTTTGTTGTTTTAAGGAAATAACAGGGTCTTGCAGTGGAAAAAGATGATGTGTCAAGAAAGA CTTCATCTTCTCCCTTCCGCGATTTGGGTGCATCATTCCCAGTGCCTCGTCCTGGCGCAACAGCCATTGATTTCAGGCAA ATTTTTTACACTTGTTCTGTGGTTTTGGCTGCTCTCCTTTTGCATTTTAATTTAATGGAACAGCATTTCAAGTGTGTTTA TTTTGAAGTCGAATAGAATTCTCTTTTTTTACTTCAGTACATTTCGGTCAACCTTCATAGGAGGTAGATGGCTTCTATTA TAAACCTTCCAGGTATAAAACTAAATTCATTTTCTACTATCGTAGTCTCTTCCCGTAATCTATGTTCAATCATCTTTCCC ATAATTTCATATTGTGACTCATAAGTTTTATCCCCATATAGTTACCGCAATTTGAATATCCCCTTGCTTTTTATATAGTA CATCTCCTCCATGCATCTGCCATTTGTTTAGATCTCATTGAACAACCTAGTGAGCTAACTGATACCTTGGTCTTCTACAC ATTTCCAAACTTCAATAGGGATATTATCAAGACCTAGTGCTTTACCATTATCCATATGCTTAAGAACATCTTTAACTTCT CTGACTCGAATTCTACGATAGTAAGCCAGATTTTGCTCATCCTCTCCCACTACTAAGCCTTCCATGTTATAGTTTGATCA TTGTCCATCATTGAAAATTTTGTTGAAGTAATTCTTCTGTCTCTCTCCAATACCTTGATCAGTAACCAAAATTGTTCCCT CTTCATCTTTAATACATCTTACTTGATCCAAATCTCTTGGTTTTCTTTCTCAGTTTTTGGCAAGCTTATATATTTTTCGT TTTCCATTTTTTTGTCCTAAAGATCTCTATAAAGCTTCTCGTAGGTCACGGATCGTGCGTCACTCACAGCTTTCACAACA TCGTGCGTTGTCGCGTTCGTGTAAAGCCTTAAAAAAACACAACATTTTATATTTTACCTTTTCTTTCACACTATCATTCC ACCACCAAGACTCCTTTTTCTTTTGGTAAGCCCAAGACTCCTTATCTCTCAATCCAAAACCTTTAGATACACCCAATACT TCTTTGGCAACCCTCCTAACCTTCTTATATATACTCCCAAATGAGATTAACATCACCTTGTGCCTCCCAGTTACCTTTCT CCGCAATTCCCTTAAAATTCAAAAGTTTCTCTCCCTTGAGCTGCCATAACTTAATTCTTGGGTTTGTAACTCGTCGAGTT TTCTGATTATGGCTCTTAAAACGAACATCAAGGACCAAAACTCTATGTTGTGCAGTCAAGCTCTCTCCCAATATTACCTT GCAATCCTTCCAAACCCTATTATCTAAGCTCCTTACAAAAAAGATGTCAATTTGTGACCTTGAGGTCCTGCTTTTATATG TGATGGGATGTTCCTCTTGCTTTTTAAATTAGTGTTTAAAATCTTGAGGTCATGCGATGGAAAAATCTAAAATAGGCTGC CCTTTCTCATTTAACTTTCCAAAACCAAAACCTCCATGAACTCGAGTAAAAGGCCCTGCCTCTCAATTGACGTGTTCGTT TAGATCACCACCTATAAACAACTTCTCTTCTTGTGGGATGCCTTGAACGACACTCTCCAAATCCTCCCAAAACTTTTCTT TCAAAAAATCTTCTGATCCTACTTGAGGGACATAAGCACTAATGATATTGATAGTCTCTTGAGCCACAAATAATTTTGAA GATCAGTTTGGGTCCTAACCTTTTGACATTCACTACATTCTTTTTCCAGTTGTCCACAATAATACCACGCCATTCCTTCC TCTGACATTCCTGGTGTACTAAAGCTTAAATCTTGTAGTGTCTAGCTCCTTAGATTTTTCCCCAACCCATGTAGTTTCTT GAAGGCACATTATATTAATCCTTCTTTGACTCATAATGTCCACCACCTCCATAGATTTACCTGTGAAAGTACCAATATTC CAAGAACCAAACCTAATCAAGCATTCCTGGGATAGCTTCTTTACCACATCCGCCTAGGAAAATTTGAAGACCCTTGCTCA TTTAACATTGCATCCTTGTGCCAATGCAACGACTCTAGCCTATTTAAACTGTACTCGACCTAGCATTAGCACAAATCTGT AACGTTTGATCCATATTTAAGATAATGGTCAGTTTTATGTTAGCTTTCGTAGGCTTAACACAATCTTCCTCCTTTACTCG GACTTAGGACTTTCTATGACAAGAGTTTCATCAAGCATAATTTGTTATATTTAATTTTGGTCTCATGCTAGTAGTAACAA TACTATGTTCCTTCATTTTCATATCATAAATGAGATAACGGTAATCTTAATTCATCCTTTGGTGCTATGCTCTAAAAATG AACCCTGAAAAATTGCATTTTGTTATAACAGCTTTGTGCCAGATATAAAAGGTTCATCCAAGAGCTTCCCAAAGCATGAG ACACGACATCTTTCAGAACACAAGGTATGTAATATGCTTTGATAACTTGTAAGTTCCTACAGTATCAATTTTAATTTCTT AATATCATGCAAACCCTACTAATAAGTATTAGCTTTCTAATTACCGGTGTTTTTGGACTGATTGGCTTAATTTCTAGAAT ATTGTCAGATGTGCTAAGTTTAGTCCTGATGGAAGGTTTGTTGCCACTGGAAGTGCAGATACATCAATAAAGCTATTTGA GGTGATGATGATTTATTGTTAAGGTTAGATGTTTTGCTCTCTCTTTGACATGACTTTCGAACTTATGCGTTCATTTATTT GGCAGGTTTCAAAGATCAAGCAGATGTTGCTTCCTGAAGCAAAGGATGGTCCTGTGCGGTCCGTCATACGAACATATTAT GACCATATACAAGTATACTGGCATTTCTCCAAGTTCTTTTGAATTTATAACGTTGAACTGTTTCTTCTACCCCAAAATTC GATATTTAGATGATATAAAACCAATAATTGACTTCTGCGCTACTATTGATGTTGACACAGCTTCGTGATAGGAATGTGAT TTCTAACATGCCAAATAACTAGTTTGTTTGATTTGAAAATATTATAGATTGCTAACTAGCCATTTGAAATCTAACAATAT TGAACATTTTAAGGATACTAGATAGGCAGGTGCAAGGTTAGCATACCTTTCTCTGAAAAATAGAGCATCAGCTTATGGTG GTCAGCAATACTTCTGCGCTACTATTGATGTTGACACAACTTCATGATAGGAATGTGATTTCTAACATGCCAAATAACTA GTTTCTTTGACTTTGGAAATATTGTAGATTGCTAATTAATCATTTGAAATCTAACAATATTGAACATTTTAAGAATACTA GATAGGCAGGTGCAAAGTTAGCATAACTTTCTCTGAAAAATAGAGCATCAGCTTATGATGGTCAGCAAATTTACTAGTAA CTAAATTACATGCTTTTTTTATGATATTTATTCTTTTCAAGTATATTGCACCAGATTGTGGAAGTTCATAATTCAAAATA TGTTAACTTAATGAATTTACTTAACACAAACATTATATATCACCGTGCCAACTTCTATTTGTCTTTGTTGTAGTAGAGGT TTTTTAACCAACGTGAAGCTTGCTCTTACATTGATGAGTTTTTGCAGATACTTCTTTTCACATATCGCATTAGGCATTTA CTTTTGAAAATTTAAAGTTTGTAAAATAATCTTGATAAACTATCCTTGTTTATTTAACTTTTTATATAACAAAACTGCAG CCAATAAATGATTTGGATTTTCATCCGCAAGGTACTATCCTGATTTCTGGAGCCAAAGATCAAACAATAAAGTACGATCT CTTACAGTATAACTCTGTAATTTTGTTCTGTATTATGCATCTCATCTGTACTCCTTTTTCAAGTTTCTGCGTTCTGCCCT TTTTCTTTTGGAAATGCTCTTATTCTTGTTTAACATTGTTTAGGTTTTTTGATATTTCAAAAACCAATGCAAAGAGATCA TCCAGGGTTATCCAGGTTCGGCTCTACTGCATTTATAGTATAAGCAACAAATAGCAAATATAAGAATTGAGCATAAACTT CCATTCTTGTTCGATTATGTTCTGCAGGACACACACAATGTTCGCTCTGTTTCTTTTCACCCCTCTGGGGATTTTCTGCT GGCTGGTATTTATTTTTATCAGATCTTTCTTGCTTATCATCTCTAGTGATATTATTTTCTGTAATCCCACTGATTCAATC TCCAATTCCAAATTCTTGTATTTCTTAATTGTGTGTGCAAATTTGCAATTACAAATCCTGCGCTGATATATTTGTTGTGG AGCAATTTTCATTGTATATTTCTGTTAGCTTAGGAAATGGCTCAGTCAATACTTCCTTGTCCTATTTTCTATGAATCCAC CCTGATTTCTGAGTAGGCAATAACTCTGCATTCTGGAATTTGAATGATTTTCTCTCTTAAACCACTGATATTGAGTGCCA GGGGAAAGCCTGTCTTTGTCTCTAAATCAACTTCCAATCCGCATCCTAGTTTTCTTCCTTGATTTTTTCTCACAACAAAA GTAAAGATGATAAATATTAACTTTTGACAGGGACTGATCATGCAATTCCACATTTGTATGATATAAACACCTTTCAGTGT TATCTATCAGCAAATCTCCTGGATATTAGTCCTAATGGAGCCATAAACCAGGCATGTAAATTCTCTCTTGTTCACAAACT GATTGACCTATGTTTTACTTTTATCGACGTTGAAGTGATGCCAATCATTTCTTGCCTGACCTATATAGGTCAGATATTCT TCTACAGGTGCCATGTATGTTACAGCTTGTAAAGATGGTGCTATTCGGTTATGGGATGGCATCACCGCCAATTGTGTGCG CACAATAATTGGAGCACATGGAACAGCTGAGGCTACCAGTGCAATTTTTACAAGAGATCAAAGGTATAAATGCATTTTAG TGCAAATGACACTCACATGCATTGATGCACTAATAGACCATGACAATGATAGTGCCACCGCCATCATGAGTTATGTCTCG ATAGTGAATAGCATGACTAGCGGTTTGTCTTCAGCCATGTATTTGTGGACCTCCGAACCTTTGATGTCTAAAGAAATTAC AATGGAGATTTGATAGGATTGCTAGTCAAGTTAGGCCCCCTATTAGGGAAGTTTATGCGAGAAGGAACCGAGCTACATAG CTCTTAGCTCTTGTGATTCTGTTTTGCTGAGCTGTGCCAGTTGTAATTCCTAGCAGATTAGTTAGGAATGATTAGTATAA ATAAGTGAAGCTTAGTCTTCATTAGTTAGGCAGTTATAGAGTTGATTGGTTAGAACTGAATTGCCCTGCAATTCAGTTGG CATCTCTGTAACCGTTTGCTATCTTGCAACTGTTTTCTATCTCAGGTTTCAATACTCAGTTCTATAGTGTTCATCTTCTT CCTCAGAATTCTTGGTTCTCTCTGGTTCACAGTACCAGATCTATCAAGATTTTTTCTTTGGGGCAAGGGACAGGGGGATG GGTGTGTGTGCAGTGAATAAGGGTGTGATTGACTTTGAAGCCGAAGCAAAAACTAATTTTTGCTTTAAAGTGGGTGCTTC GCTTGCTGTTCCAAACCTTAATTAGTCTTAACATCAGAGTTAACAATCTCCGATCAAAATCCTGTTTACTACAGCACACA TTAAGAGCTTATGTTTTATTTGAACTATACAATTTTTAGCTGAAAGCGAAATCACCAACCCCCCCCCCCCCCCTCTCTTG GGAATAAAAAGAAGATAAAAGTAATTCCATTCTTTACCAGTCCATTGCTTTTGATGCAACGGACATTGACAGTTGACAAA CTTTTTATACTTCGCTGTAGTTTCCTGATAGGCTTAAATTGGTTTAGCAATATAACAGTCTGTTTTCTAGGTTTGTCCTC TCCTGCGGGAAGGATTCTACCATAAAGCTTTGGGAAGTCGCCTCTGGAAGATTAGTCAAACAGTATCTCGGAGCTACACA TACACAGCTAAGATGCCAGGTAAATACATGTGTTCCGTTTAGTATTTTTTATAAATTAATCTTGGTCAATTCATATACGA TGTTTGTGGTATAAGTCATGCAAATTCATGGATTTTTACCTTGCACTGAGCGATGTTTGTGTTTTTGTTTTCTTCTCCTT TTTTCGGTATCTAGCTTTGTCCAACATTTATAAAAATAGTTCTTGATATATTTCTCCCAGTCACAAGGAATCATTGTTTG TCAATTGCCACTATCATTGGAATTAAAAAGCTTTAGTGAAAACTTCAATAGATACTCACTCATCCATAGGTTGTATTTTC GGGTACATTGGGATGTATTAGTTATCCTCATTCCTTAGTCCACGTGAAATTCTCATACCAATTACCATTCTATGAACCCT TTTTTGCAGGCAATGTTTAATGAGACAGAAGAATTTATTCTTTCTGTAGATGAATTCAGCAATGAGGTTTGTTCAGTTGT CTACTGTGTGCTAACGTTAGCTTGATCAAATGAATATTATTTGAGCTATCTGGTATACTTTTGCAGATCGTTATCTGGGA TGCGATAACATCAGAAAAAGTAGCAAAGTGGCCTTCTAATCATGTCGGTGCACCCCGCTGGCTTGAACACTCACCAGTAG AGTCTGCTTTTATTTCATGTGGAACTGATAGGTCAGTTCGGTTTTGGAAGGAAAATCTATAGGTACAAAGTGAAGGAGTT CAAAGATAGACGCTAAATAACGATCCTCTTTCTCACACTTTGAATTTTACCCTGTAACATCAGTAAACGCATTCACAACA TGAAATTGGTGGATAATCTTTTAGCAGTGTTTGAGTGAGAATCAAATTGATTGATGTTCTAAAACTCAATCTTTAAATCT TTTTGTTGATCTTAGTTTGGTGTCTATGGGTGAGCAGAAATACTGAATCAGCCCGAAACCGAGCAGTAATAAGTTTTGAA AATCATAAGATTTGCCCAAATTTTGCCTGAACAAGATCCCATCTCACTAACAGTAGTCATTTTTTGGTGCTTGCTGTGGT ACCTTCAGTCAGATCAAGGTGTGGTATTTGAAATGATGTGTACCAATAGAAAGCAT
CDS sequence (LotjaGi1g1v0212000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGCTTCCTGAAGCAAAGGATGGTCCTGTGCGGTCCGTCATACGAACATATTATGACCATATACAACCAATAAATGA TTTGGATTTTCATCCGCAAGGTACTATCCTGATTTCTGGAGCCAAAGATCAAACAATAAAGTTTTTTGATATTTCAAAAA CCAATGCAAAGAGATCATCCAGGGTTATCCAGGACACACACAATGTTCGCTCTGTTTCTTTTCACCCCTCTGGGGATTTT CTGCTGGCTGGGACTGATCATGCAATTCCACATTTGTATGATATAAACACCTTTCAGTGTTATCTATCAGCAAATCTCCT GGATATTAGTCCTAATGGAGCCATAAACCAGGTCAGATATTCTTCTACAGGTGCCATGTATGTTACAGCTTGTAAAGATG GTGCTATTCGGTTATGGGATGGCATCACCGCCAATTGTGTGCGCACAATAATTGGAGCACATGGAACAGCTGAGGCTACC AGTGCAATTTTTACAAGAGATCAAAGGTTTGTCCTCTCCTGCGGGAAGGATTCTACCATAAAGCTTTGGGAAGTCGCCTC TGGAAGATTAGTCAAACAGTATCTCGGAGCTACACATACACAGCTAAGATGCCAGGCAATGTTTAATGAGACAGAAGAAT TTATTCTTTCTGTAGATGAATTCAGCAATGAGATCGTTATCTGGGATGCGATAACATCAGAAAAAGTAGCAAAGTGGCCT TCTAATCATGTCGGTGCACCCCGCTGGCTTGAACACTCACCAGTAGAGTCTGCTTTTATTTCATGTGGAACTGATAGGTC AGTTCGGTTTTGGAAGGAAAATCTATAG
Protein sequence (LotjaGi1g1v0212000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLPEAKDGPVRSVIRTYYDHIQPINDLDFHPQGTILISGAKDQTIKFFDISKTNAKRSSRVIQDTHNVRSVSFHPSGDF LLAGTDHAIPHLYDINTFQCYLSANLLDISPNGAINQVRYSSTGAMYVTACKDGAIRLWDGITANCVRTIIGAHGTAEAT SAIFTRDQRFVLSCGKDSTIKLWEVASGRLVKQYLGATHTQLRCQAMFNETEEFILSVDEFSNEIVIWDAITSEKVAKWP SNHVGAPRWLEHSPVESAFISCGTDRSVRFWKENL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 274 | 272 | 1.8E-150 | – | |
| Gene3D | 3 | 275 | 273 | 3.0E-48 | ||
| SMART | 11 | 50 | 40 | 2.0E-7 | ||
| SUPERFAMILY | 13 | 272 | 260 | 1.1E-47 | ||
| Pfam | 14 | 50 | 37 | 2.4E-6 | ||
| ProSiteProfiles | 18 | 275 | 258 | 31.006 | ||
| ProSiteProfiles | 18 | 59 | 42 | 12.146 | ||
| SMART | 56 | 94 | 39 | 3.8 | ||
| Pfam | 66 | 89 | 24 | 0.0086 | ||
| SMART | 103 | 140 | 38 | 0.035 | ||
| Pfam | 114 | 140 | 27 | 0.055 | ||
| ProSiteProfiles | 115 | 149 | 35 | 10.074 | ||
| SMART | 143 | 184 | 42 | 8.1E-4 | ||
| Pfam | 145 | 183 | 39 | 8.4E-4 | ||
| ProSiteProfiles | 164 | 193 | 30 | 10.107 | ||
| ProSitePatterns | 171 | 185 | 15 | - | ||
| SMART | 232 | 272 | 41 | 0.8 | ||
| Pfam | 252 | 272 | 21 | 0.18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0212000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…