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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0212000 |
| Transcript ID | LotjaGi1g1v0212000.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Wd40-repeat-like protein; TAIR: AT5G60940.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q8L4J2|CTF50_ARATH Cleavage stimulation factor subunit 50; TrEMBL-Plants: tr|I1KD31|I1KD31_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0212000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:46672115..46679348) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATAACAACAGTAACTCAGACCAAATTGTACTCGATGGCAAACTCTACAGACTCCTCAATTCTCTGATCGTCGCTCA TCTTCGTGACAACAATCTCACTCAGGTTCAAACCTCCCTCGCATTCATTTTCACCTATTTGCTCCATTTTCAGCTACTTG AAAATTGAAATCGTTGTTTTCATCAATCAGGCTGCAACTGCTGTTGCTTCAGCAACCATGTCACCACTGAATGTAGAAGC ACCTCCCAACAGGCTTCTTGAGCTCTTTGCTAAGGTCCATACAATACATTTACAATTTCGTAGCGGTAGACATATTATAT ATTAGTCCTTGATAATGCAAAAATTTCTCAAATGGTGGTCATGTTGTTAGTTACTAAACATGAGATAATTGTTATTGAAG ATATTTGTGATTTCTAGAGACTAGGTTGAAGCTTTTACATTCTCGAGGACTAGTGTGTTAGTTCCGCGAAGTCTTACTTG TAGGAATTTCCGGAGTTACTCCTTTCGTATGTGTAATTCAATCTATACCTTTTATTTGAGCATGAGGAAGCTTTGTTGTT TTAAGGAAATAACAGGGTCTTGCAGTGGAAAAAGATGATGTGTCAAGAAAGACTTCATCTTCTCCCTTCCGCGATTTGGG TGCATCATTCCCAGTGCCTCGTCCTGGCGCAACAGCCATTGATTTCAGGCAAATTTTTTACACTTGTTCTGTGGTTTTGG CTGCTCTCCTTTTGCATTTTAATTTAATGGAACAGCATTTCAAGTGTGTTTATTTTGAAGTCGAATAGAATTCTCTTTTT TTACTTCAGTACATTTCGGTCAACCTTCATAGGAGGTAGATGGCTTCTATTATAAACCTTCCAGGTATAAAACTAAATTC ATTTTCTACTATCGTAGTCTCTTCCCGTAATCTATGTTCAATCATCTTTCCCATAATTTCATATTGTGACTCATAAGTTT TATCCCCATATAGTTACCGCAATTTGAATATCCCCTTGCTTTTTATATAGTACATCTCCTCCATGCATCTGCCATTTGTT TAGATCTCATTGAACAACCTAGTGAGCTAACTGATACCTTGGTCTTCTACACATTTCCAAACTTCAATAGGGATATTATC AAGACCTAGTGCTTTACCATTATCCATATGCTTAAGAACATCTTTAACTTCTCTGACTCGAATTCTACGATAGTAAGCCA GATTTTGCTCATCCTCTCCCACTACTAAGCCTTCCATGTTATAGTTTGATCATTGTCCATCATTGAAAATTTTGTTGAAG TAATTCTTCTGTCTCTCTCCAATACCTTGATCAGTAACCAAAATTGTTCCCTCTTCATCTTTAATACATCTTACTTGATC CAAATCTCTTGGTTTTCTTTCTCAGTTTTTGGCAAGCTTATATATTTTTCGTTTTCCATTTTTTTGTCCTAAAGATCTCT ATAAAGCTTCTCGTAGGTCACGGATCGTGCGTCACTCACAGCTTTCACAACATCGTGCGTTGTCGCGTTCGTGTAAAGCC TTAAAAAAACACAACATTTTATATTTTACCTTTTCTTTCACACTATCATTCCACCACCAAGACTCCTTTTTCTTTTGGTA AGCCCAAGACTCCTTATCTCTCAATCCAAAACCTTTAGATACACCCAATACTTCTTTGGCAACCCTCCTAACCTTCTTAT ATATACTCCCAAATGAGATTAACATCACCTTGTGCCTCCCAGTTACCTTTCTCCGCAATTCCCTTAAAATTCAAAAGTTT CTCTCCCTTGAGCTGCCATAACTTAATTCTTGGGTTTGTAACTCGTCGAGTTTTCTGATTATGGCTCTTAAAACGAACAT CAAGGACCAAAACTCTATGTTGTGCAGTCAAGCTCTCTCCCAATATTACCTTGCAATCCTTCCAAACCCTATTATCTAAG CTCCTTACAAAAAAGATGTCAATTTGTGACCTTGAGGTCCTGCTTTTATATGTGATGGGATGTTCCTCTTGCTTTTTAAA TTAGTGTTTAAAATCTTGAGGTCATGCGATGGAAAAATCTAAAATAGGCTGCCCTTTCTCATTTAACTTTCCAAAACCAA AACCTCCATGAACTCGAGTAAAAGGCCCTGCCTCTCAATTGACGTGTTCGTTTAGATCACCACCTATAAACAACTTCTCT TCTTGTGGGATGCCTTGAACGACACTCTCCAAATCCTCCCAAAACTTTTCTTTCAAAAAATCTTCTGATCCTACTTGAGG GACATAAGCACTAATGATATTGATAGTCTCTTGAGCCACAAATAATTTTGAAGATCAGTTTGGGTCCTAACCTTTTGACA TTCACTACATTCTTTTTCCAGTTGTCCACAATAATACCACGCCATTCCTTCCTCTGACATTCCTGGTGTACTAAAGCTTA AATCTTGTAGTGTCTAGCTCCTTAGATTTTTCCCCAACCCATGTAGTTTCTTGAAGGCACATTATATTAATCCTTCTTTG ACTCATAATGTCCACCACCTCCATAGATTTACCTGTGAAAGTACCAATATTCCAAGAACCAAACCTAATCAAGCATTCCT GGGATAGCTTCTTTACCACATCCGCCTAGGAAAATTTGAAGACCCTTGCTCATTTAACATTGCATCCTTGTGCCAATGCA ACGACTCTAGCCTATTTAAACTGTACTCGACCTAGCATTAGCACAAATCTGTAACGTTTGATCCATATTTAAGATAATGG TCAGTTTTATGTTAGCTTTCGTAGGCTTAACACAATCTTCCTCCTTTACTCGGACTTAGGACTTTCTATGACAAGAGTTT CATCAAGCATAATTTGTTATATTTAATTTTGGTCTCATGCTAGTAGTAACAATACTATGTTCCTTCATTTTCATATCATA AATGAGATAACGGTAATCTTAATTCATCCTTTGGTGCTATGCTCTAAAAATGAACCCTGAAAAATTGCATTTTGTTATAA CAGCTTTGTGCCAGATATAAAAGGTTCATCCAAGAGCTTCCCAAAGCATGAGACACGACATCTTTCAGAACACAAGGTAT GTAATATGCTTTGATAACTTGTAAGTTCCTACAGTATCAATTTTAATTTCTTAATATCATGCAAACCCTACTAATAAGTA TTAGCTTTCTAATTACCGGTGTTTTTGGACTGATTGGCTTAATTTCTAGAATATTGTCAGATGTGCTAAGTTTAGTCCTG ATGGAAGGTTTGTTGCCACTGGAAGTGCAGATACATCAATAAAGCTATTTGAGGTGATGATGATTTATTGTTAAGGTTAG ATGTTTTGCTCTCTCTTTGACATGACTTTCGAACTTATGCGTTCATTTATTTGGCAGGTTTCAAAGATCAAGCAGATGTT GCTTCCTGAAGCAAAGGATGGTCCTGTGCGGTCCGTCATACGAACATATTATGACCATATACAAGTATACTGGCATTTCT CCAAGTTCTTTTGAATTTATAACGTTGAACTGTTTCTTCTACCCCAAAATTCGATATTTAGATGATATAAAACCAATAAT TGACTTCTGCGCTACTATTGATGTTGACACAGCTTCGTGATAGGAATGTGATTTCTAACATGCCAAATAACTAGTTTGTT TGATTTGAAAATATTATAGATTGCTAACTAGCCATTTGAAATCTAACAATATTGAACATTTTAAGGATACTAGATAGGCA GGTGCAAGGTTAGCATACCTTTCTCTGAAAAATAGAGCATCAGCTTATGGTGGTCAGCAATACTTCTGCGCTACTATTGA TGTTGACACAACTTCATGATAGGAATGTGATTTCTAACATGCCAAATAACTAGTTTCTTTGACTTTGGAAATATTGTAGA TTGCTAATTAATCATTTGAAATCTAACAATATTGAACATTTTAAGAATACTAGATAGGCAGGTGCAAAGTTAGCATAACT TTCTCTGAAAAATAGAGCATCAGCTTATGATGGTCAGCAAATTTACTAGTAACTAAATTACATGCTTTTTTTATGATATT TATTCTTTTCAAGTATATTGCACCAGATTGTGGAAGTTCATAATTCAAAATATGTTAACTTAATGAATTTACTTAACACA AACATTATATATCACCGTGCCAACTTCTATTTGTCTTTGTTGTAGTAGAGGTTTTTTAACCAACGTGAAGCTTGCTCTTA CATTGATGAGTTTTTGCAGATACTTCTTTTCACATATCGCATTAGGCATTTACTTTTGAAAATTTAAAGTTTGTAAAATA ATCTTGATAAACTATCCTTGTTTATTTAACTTTTTATATAACAAAACTGCAGCCAATAAATGATTTGGATTTTCATCCGC AAGGTACTATCCTGATTTCTGGAGCCAAAGATCAAACAATAAAGTACGATCTCTTACAGTATAACTCTGTAATTTTGTTC TGTATTATGCATCTCATCTGTACTCCTTTTTCAAGTTTCTGCGTTCTGCCCTTTTTCTTTTGGAAATGCTCTTATTCTTG TTTAACATTGTTTAGGTTTTTTGATATTTCAAAAACCAATGCAAAGAGATCATCCAGGGTTATCCAGGTTCGGCTCTACT GCATTTATAGTATAAGCAACAAATAGCAAATATAAGAATTGAGCATAAACTTCCATTCTTGTTCGATTATGTTCTGCAGG ACACACACAATGTTCGCTCTGTTTCTTTTCACCCCTCTGGGGATTTTCTGCTGGCTGGTATTTATTTTTATCAGATCTTT CTTGCTTATCATCTCTAGTGATATTATTTTCTGTAATCCCACTGATTCAATCTCCAATTCCAAATTCTTGTATTTCTTAA TTGTGTGTGCAAATTTGCAATTACAAATCCTGCGCTGATATATTTGTTGTGGAGCAATTTTCATTGTATATTTCTGTTAG CTTAGGAAATGGCTCAGTCAATACTTCCTTGTCCTATTTTCTATGAATCCACCCTGATTTCTGAGTAGGCAATAACTCTG CATTCTGGAATTTGAATGATTTTCTCTCTTAAACCACTGATATTGAGTGCCAGGGGAAAGCCTGTCTTTGTCTCTAAATC AACTTCCAATCCGCATCCTAGTTTTCTTCCTTGATTTTTTCTCACAACAAAAGTAAAGATGATAAATATTAACTTTTGAC AGGGACTGATCATGCAATTCCACATTTGTATGATATAAACACCTTTCAGTGTTATCTATCAGCAAATCTCCTGGATATTA GTCCTAATGGAGCCATAAACCAGGCATGTAAATTCTCTCTTGTTCACAAACTGATTGACCTATGTTTTACTTTTATCGAC GTTGAAGTGATGCCAATCATTTCTTGCCTGACCTATATAGGTCAGATATTCTTCTACAGGTGCCATGTATGTTACAGCTT GTAAAGATGGTGCTATTCGGTTATGGGATGGCATCACCGCCAATTGTGTGCGCACAATAATTGGAGCACATGGAACAGCT GAGGCTACCAGTGCAATTTTTACAAGAGATCAAAGGTATAAATGCATTTTAGTGCAAATGACACTCACATGCATTGATGC ACTAATAGACCATGACAATGATAGTGCCACCGCCATCATGAGTTATGTCTCGATAGTGAATAGCATGACTAGCGGTTTGT CTTCAGCCATGTATTTGTGGACCTCCGAACCTTTGATGTCTAAAGAAATTACAATGGAGATTTGATAGGATTGCTAGTCA AGTTAGGCCCCCTATTAGGGAAGTTTATGCGAGAAGGAACCGAGCTACATAGCTCTTAGCTCTTGTGATTCTGTTTTGCT GAGCTGTGCCAGTTGTAATTCCTAGCAGATTAGTTAGGAATGATTAGTATAAATAAGTGAAGCTTAGTCTTCATTAGTTA GGCAGTTATAGAGTTGATTGGTTAGAACTGAATTGCCCTGCAATTCAGTTGGCATCTCTGTAACCGTTTGCTATCTTGCA ACTGTTTTCTATCTCAGGTTTCAATACTCAGTTCTATAGTGTTCATCTTCTTCCTCAGAATTCTTGGTTCTCTCTGGTTC ACAGTACCAGATCTATCAAGATTTTTTCTTTGGGGCAAGGGACAGGGGGATGGGTGTGTGTGCAGTGAATAAGGGTGTGA TTGACTTTGAAGCCGAAGCAAAAACTAATTTTTGCTTTAAAGTGGGTGCTTCGCTTGCTGTTCCAAACCTTAATTAGTCT TAACATCAGAGTTAACAATCTCCGATCAAAATCCTGTTTACTACAGCACACATTAAGAGCTTATGTTTTATTTGAACTAT ACAATTTTTAGCTGAAAGCGAAATCACCAACCCCCCCCCCCCCCCTCTCTTGGGAATAAAAAGAAGATAAAAGTAATTCC ATTCTTTACCAGTCCATTGCTTTTGATGCAACGGACATTGACAGTTGACAAACTTTTTATACTTCGCTGTAGTTTCCTGA TAGGCTTAAATTGGTTTAGCAATATAACAGTCTGTTTTCTAGGTTTGTCCTCTCCTGCGGGAAGGATTCTACCATAAAGC TTTGGGAAGTCGCCTCTGGAAGATTAGTCAAACAGTATCTCGGAGCTACACATACACAGCTAAGATGCCAGGTAAATACA TGTGTTCCGTTTAGTATTTTTTATAAATTAATCTTGGTCAATTCATATACGATGTTTGTGGTATAAGTCATGCAAATTCA TGGATTTTTACCTTGCACTGAGCGATGTTTGTGTTTTTGTTTTCTTCTCCTTTTTTCGGTATCTAGCTTTGTCCAACATT TATAAAAATAGTTCTTGATATATTTCTCCCAGTCACAAGGAATCATTGTTTGTCAATTGCCACTATCATTGGAATTAAAA AGCTTTAGTGAAAACTTCAATAGATACTCACTCATCCATAGGTTGTATTTTCGGGTACATTGGGATGTATTAGTTATCCT CATTCCTTAGTCCACGTGAAATTCTCATACCAATTACCATTCTATGAACCCTTTTTTGCAGGCAATGTTTAATGAGACAG AAGAATTTATTCTTTCTGTAGATGAATTCAGCAATGAGGTTTGTTCAGTTGTCTACTGTGTGCTAACGTTAGCTTGATCA AATGAATATTATTTGAGCTATCTGGTATACTTTTGCAGATCGTTATCTGGGATGCGATAACATCAGAAAAAGTAGCAAAG TGGCCTTCTAATCATGTCGGTGCACCCCGCTGGCTTGAACACTCACCAGTAGAGTCTGCTTTTATTTCATGTGGAACTGA TAGGTCAGTTCGGTTTTGGAAGGAAAATCTATAG
CDS sequence (LotjaGi1g1v0212000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATAACAACAGTAACTCAGACCAAATTGTACTCGATGGCAAACTCTACAGACTCCTCAATTCTCTGATCGTCGCTCA TCTTCGTGACAACAATCTCACTCAGGCTGCAACTGCTGTTGCTTCAGCAACCATGTCACCACTGAATGTAGAAGCACCTC CCAACAGGCTTCTTGAGCTCTTTGCTAAGATTGCATTTTGTTATAACAGCTTTGTGCCAGATATAAAAGGTTCATCCAAG AGCTTCCCAAAGCATGAGACACGACATCTTTCAGAACACAAGAATATTGTCAGATGTGCTAAGTTTAGTCCTGATGGAAG GTTTGTTGCCACTGGAAGTGCAGATACATCAATAAAGCTATTTGAGGTTTCAAAGATCAAGCAGATGTTGCTTCCTGAAG CAAAGGATGGTCCTGTGCGGTCCCCAATAAATGATTTGGATTTTCATCCGCAAGGTACTATCCTGATTTCTGGAGCCAAA GATCAAACAATAAAGTTTTTTGATATTTCAAAAACCAATGCAAAGAGATCATCCAGGGTTATCCAGGACACACACAATGT TCGCTCTGTTTCTTTTCACCCCTCTGGGGATTTTCTGCTGGCTGGGACTGATCATGCAATTCCACATTTGTATGATATAA ACACCTTTCAGTGTTATCTATCAGCAAATCTCCTGGATGTCAGATATTCTTCTACAGGTGCCATGTATGTTACAGCTTGT AAAGATGGTGCTATTCGGTTATGGGATGGCATCACCGCCAATTGTGTGCGCACAATAATTGGAGCACATGGAACAGCTGA GGCTACCAGTGCAATTTTTACAAGAGATCAAAGGTTTGTCCTCTCCTGCGGGAAGGATTCTACCATAAAGCTTTGGGAAG TCGCCTCTGGAAGATTAGTCAAACAGTATCTCGGAGCTACACATACACAGCTAAGATGCCAGGCAATGTTTAATGAGACA GAAGAATTTATTCTTTCTGTAGATGAATTCAGCAATGAGATCGTTATCTGGGATGCGATAACATCAGAAAAAGTAGCAAA GTGGCCTTCTAATCATGTCGGTGCACCCCGCTGGCTTGAACACTCACCAGTAGAGTCTGCTTTTATTTCATGTGGAACTG ATAGGTCAGTTCGGTTTTGGAAGGAAAATCTATAG
Protein sequence (LotjaGi1g1v0212000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDNNSNSDQIVLDGKLYRLLNSLIVAHLRDNNLTQAATAVASATMSPLNVEAPPNRLLELFAKIAFCYNSFVPDIKGSSK SFPKHETRHLSEHKNIVRCAKFSPDGRFVATGSADTSIKLFEVSKIKQMLLPEAKDGPVRSPINDLDFHPQGTILISGAK DQTIKFFDISKTNAKRSSRVIQDTHNVRSVSFHPSGDFLLAGTDHAIPHLYDINTFQCYLSANLLDVRYSSTGAMYVTAC KDGAIRLWDGITANCVRTIIGAHGTAEATSAIFTRDQRFVLSCGKDSTIKLWEVASGRLVKQYLGATHTQLRCQAMFNET EEFILSVDEFSNEIVIWDAITSEKVAKWPSNHVGAPRWLEHSPVESAFISCGTDRSVRFWKENL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 63 | 56 | 1.7E-178 | – | |
| PANTHER | 70 | 383 | 314 | 1.7E-178 | – | |
| Gene3D | 77 | 384 | 308 | 5.0E-55 | ||
| SUPERFAMILY | 82 | 381 | 300 | 1.56E-56 | ||
| SMART | 83 | 122 | 40 | 3.1E-7 | ||
| CDD | 86 | 381 | 296 | 6.58398E-49 | – | |
| Pfam | 87 | 121 | 35 | 2.4E-7 | ||
| ProSiteProfiles | 90 | 384 | 295 | 29.952 | ||
| ProSiteProfiles | 90 | 131 | 42 | 12.413 | ||
| SMART | 135 | 168 | 34 | 0.0021 | ||
| Pfam | 141 | 168 | 28 | 4.9E-4 | ||
| ProSiteProfiles | 143 | 177 | 35 | 9.807 | ||
| SMART | 174 | 212 | 39 | 3.8 | ||
| Pfam | 184 | 207 | 24 | 0.013 | ||
| SMART | 215 | 249 | 35 | 1.8 | ||
| ProSiteProfiles | 227 | 258 | 32 | 9.472 | ||
| SMART | 252 | 293 | 42 | 8.1E-4 | ||
| Pfam | 254 | 292 | 39 | 0.0014 | ||
| ProSiteProfiles | 273 | 302 | 30 | 10.107 | ||
| ProSitePatterns | 280 | 294 | 15 | - | ||
| SMART | 341 | 381 | 41 | 0.8 | ||
| Pfam | 361 | 381 | 21 | 0.27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0212000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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