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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0212000 |
| Transcript ID | LotjaGi1g1v0212000.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Wd40-repeat-like protein; TAIR: AT5G60940.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q8L4J2|CTF50_ARATH Cleavage stimulation factor subunit 50; TrEMBL-Plants: tr|I1KD31|I1KD31_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0212000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:46674780..46679348) extracted from Lotus japonicus Gifu genome v1.2.
CTCGACCTAGCATTAGCACAAATCTGTAACGTTTGATCCATATTTAAGATAATGGTCAGTTTTATGTTAGCTTTCGTAGG CTTAACACAATCTTCCTCCTTTACTCGGACTTAGGACTTTCTATGACAAGAGTTTCATCAAGCATAATTTGTTATATTTA ATTTTGGTCTCATGCTAGTAGTAACAATACTATGTTCCTTCATTTTCATATCATAAATGAGATAACGGTAATCTTAATTC ATCCTTTGGTGCTATGCTCTAAAAATGAACCCTGAAAAATTGCATTTTGTTATAACAGCTTTGTGCCAGATATAAAAGGT TCATCCAAGAGCTTCCCAAAGCATGAGACACGACATCTTTCAGAACACAAGGTATGTAATATGCTTTGATAACTTGTAAG TTCCTACAGTATCAATTTTAATTTCTTAATATCATGCAAACCCTACTAATAAGTATTAGCTTTCTAATTACCGGTGTTTT TGGACTGATTGGCTTAATTTCTAGAATATTGTCAGATGTGCTAAGTTTAGTCCTGATGGAAGGTTTGTTGCCACTGGAAG TGCAGATACATCAATAAAGCTATTTGAGGTGATGATGATTTATTGTTAAGGTTAGATGTTTTGCTCTCTCTTTGACATGA CTTTCGAACTTATGCGTTCATTTATTTGGCAGGTTTCAAAGATCAAGCAGATGTTGCTTCCTGAAGCAAAGGATGGTCCT GTGCGGTCCGTCATACGAACATATTATGACCATATACAAGTATACTGGCATTTCTCCAAGTTCTTTTGAATTTATAACGT TGAACTGTTTCTTCTACCCCAAAATTCGATATTTAGATGATATAAAACCAATAATTGACTTCTGCGCTACTATTGATGTT GACACAGCTTCGTGATAGGAATGTGATTTCTAACATGCCAAATAACTAGTTTGTTTGATTTGAAAATATTATAGATTGCT AACTAGCCATTTGAAATCTAACAATATTGAACATTTTAAGGATACTAGATAGGCAGGTGCAAGGTTAGCATACCTTTCTC TGAAAAATAGAGCATCAGCTTATGGTGGTCAGCAATACTTCTGCGCTACTATTGATGTTGACACAACTTCATGATAGGAA TGTGATTTCTAACATGCCAAATAACTAGTTTCTTTGACTTTGGAAATATTGTAGATTGCTAATTAATCATTTGAAATCTA ACAATATTGAACATTTTAAGAATACTAGATAGGCAGGTGCAAAGTTAGCATAACTTTCTCTGAAAAATAGAGCATCAGCT TATGATGGTCAGCAAATTTACTAGTAACTAAATTACATGCTTTTTTTATGATATTTATTCTTTTCAAGTATATTGCACCA GATTGTGGAAGTTCATAATTCAAAATATGTTAACTTAATGAATTTACTTAACACAAACATTATATATCACCGTGCCAACT TCTATTTGTCTTTGTTGTAGTAGAGGTTTTTTAACCAACGTGAAGCTTGCTCTTACATTGATGAGTTTTTGCAGATACTT CTTTTCACATATCGCATTAGGCATTTACTTTTGAAAATTTAAAGTTTGTAAAATAATCTTGATAAACTATCCTTGTTTAT TTAACTTTTTATATAACAAAACTGCAGCCAATAAATGATTTGGATTTTCATCCGCAAGGTACTATCCTGATTTCTGGAGC CAAAGATCAAACAATAAAGTACGATCTCTTACAGTATAACTCTGTAATTTTGTTCTGTATTATGCATCTCATCTGTACTC CTTTTTCAAGTTTCTGCGTTCTGCCCTTTTTCTTTTGGAAATGCTCTTATTCTTGTTTAACATTGTTTAGGTTTTTTGAT ATTTCAAAAACCAATGCAAAGAGATCATCCAGGGTTATCCAGGTTCGGCTCTACTGCATTTATAGTATAAGCAACAAATA GCAAATATAAGAATTGAGCATAAACTTCCATTCTTGTTCGATTATGTTCTGCAGGACACACACAATGTTCGCTCTGTTTC TTTTCACCCCTCTGGGGATTTTCTGCTGGCTGGTATTTATTTTTATCAGATCTTTCTTGCTTATCATCTCTAGTGATATT ATTTTCTGTAATCCCACTGATTCAATCTCCAATTCCAAATTCTTGTATTTCTTAATTGTGTGTGCAAATTTGCAATTACA AATCCTGCGCTGATATATTTGTTGTGGAGCAATTTTCATTGTATATTTCTGTTAGCTTAGGAAATGGCTCAGTCAATACT TCCTTGTCCTATTTTCTATGAATCCACCCTGATTTCTGAGTAGGCAATAACTCTGCATTCTGGAATTTGAATGATTTTCT CTCTTAAACCACTGATATTGAGTGCCAGGGGAAAGCCTGTCTTTGTCTCTAAATCAACTTCCAATCCGCATCCTAGTTTT CTTCCTTGATTTTTTCTCACAACAAAAGTAAAGATGATAAATATTAACTTTTGACAGGGACTGATCATGCAATTCCACAT TTGTATGATATAAACACCTTTCAGTGTTATCTATCAGCAAATCTCCTGGATATTAGTCCTAATGGAGCCATAAACCAGGC ATGTAAATTCTCTCTTGTTCACAAACTGATTGACCTATGTTTTACTTTTATCGACGTTGAAGTGATGCCAATCATTTCTT GCCTGACCTATATAGGTCAGATATTCTTCTACAGGTGCCATGTATGTTACAGCTTGTAAAGATGGTGCTATTCGGTTATG GGATGGCATCACCGCCAATTGTGTGCGCACAATAATTGGAGCACATGGAACAGCTGAGGCTACCAGTGCAATTTTTACAA GAGATCAAAGGTATAAATGCATTTTAGTGCAAATGACACTCACATGCATTGATGCACTAATAGACCATGACAATGATAGT GCCACCGCCATCATGAGTTATGTCTCGATAGTGAATAGCATGACTAGCGGTTTGTCTTCAGCCATGTATTTGTGGACCTC CGAACCTTTGATGTCTAAAGAAATTACAATGGAGATTTGATAGGATTGCTAGTCAAGTTAGGCCCCCTATTAGGGAAGTT TATGCGAGAAGGAACCGAGCTACATAGCTCTTAGCTCTTGTGATTCTGTTTTGCTGAGCTGTGCCAGTTGTAATTCCTAG CAGATTAGTTAGGAATGATTAGTATAAATAAGTGAAGCTTAGTCTTCATTAGTTAGGCAGTTATAGAGTTGATTGGTTAG AACTGAATTGCCCTGCAATTCAGTTGGCATCTCTGTAACCGTTTGCTATCTTGCAACTGTTTTCTATCTCAGGTTTCAAT ACTCAGTTCTATAGTGTTCATCTTCTTCCTCAGAATTCTTGGTTCTCTCTGGTTCACAGTACCAGATCTATCAAGATTTT TTCTTTGGGGCAAGGGACAGGGGGATGGGTGTGTGTGCAGTGAATAAGGGTGTGATTGACTTTGAAGCCGAAGCAAAAAC TAATTTTTGCTTTAAAGTGGGTGCTTCGCTTGCTGTTCCAAACCTTAATTAGTCTTAACATCAGAGTTAACAATCTCCGA TCAAAATCCTGTTTACTACAGCACACATTAAGAGCTTATGTTTTATTTGAACTATACAATTTTTAGCTGAAAGCGAAATC ACCAACCCCCCCCCCCCCCCTCTCTTGGGAATAAAAAGAAGATAAAAGTAATTCCATTCTTTACCAGTCCATTGCTTTTG ATGCAACGGACATTGACAGTTGACAAACTTTTTATACTTCGCTGTAGTTTCCTGATAGGCTTAAATTGGTTTAGCAATAT AACAGTCTGTTTTCTAGGTTTGTCCTCTCCTGCGGGAAGGATTCTACCATAAAGCTTTGGGAAGTCGCCTCTGGAAGATT AGTCAAACAGTATCTCGGAGCTACACATACACAGCTAAGATGCCAGGTAAATACATGTGTTCCGTTTAGTATTTTTTATA AATTAATCTTGGTCAATTCATATACGATGTTTGTGGTATAAGTCATGCAAATTCATGGATTTTTACCTTGCACTGAGCGA TGTTTGTGTTTTTGTTTTCTTCTCCTTTTTTCGGTATCTAGCTTTGTCCAACATTTATAAAAATAGTTCTTGATATATTT CTCCCAGTCACAAGGAATCATTGTTTGTCAATTGCCACTATCATTGGAATTAAAAAGCTTTAGTGAAAACTTCAATAGAT ACTCACTCATCCATAGGTTGTATTTTCGGGTACATTGGGATGTATTAGTTATCCTCATTCCTTAGTCCACGTGAAATTCT CATACCAATTACCATTCTATGAACCCTTTTTTGCAGGCAATGTTTAATGAGACAGAAGAATTTATTCTTTCTGTAGATGA ATTCAGCAATGAGGTTTGTTCAGTTGTCTACTGTGTGCTAACGTTAGCTTGATCAAATGAATATTATTTGAGCTATCTGG TATACTTTTGCAGATCGTTATCTGGGATGCGATAACATCAGAAAAAGTAGCAAAGTGGCCTTCTAATCATGTCGGTGCAC CCCGCTGGCTTGAACACTCACCAGTAGAGTCTGCTTTTATTTCATGTGGAACTGATAGGTCAGTTCGGTTTTGGAAGGAA AATCTATAG
CDS sequence (LotjaGi1g1v0212000.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGCTTCCTGAAGCAAAGGATGGTCCTGTGCGGTCCGTCATACGAACATATTATGACCATATACAACCAATAAATGA TTTGGATTTTCATCCGCAAGGTACTATCCTGATTTCTGGAGCCAAAGATCAAACAATAAAGTTTTTTGATATTTCAAAAA CCAATGCAAAGAGATCATCCAGGGTTATCCAGGACACACACAATGTTCGCTCTGTTTCTTTTCACCCCTCTGGGGATTTT CTGCTGGCTGGGACTGATCATGCAATTCCACATTTGTATGATATAAACACCTTTCAGTGTTATCTATCAGCAAATCTCCT GGATGTCAGATATTCTTCTACAGGTGCCATGTATGTTACAGCTTGTAAAGATGGTGCTATTCGGTTATGGGATGGCATCA CCGCCAATTGTGTGCGCACAATAATTGGAGCACATGGAACAGCTGAGGCTACCAGTGCAATTTTTACAAGAGATCAAAGG TTTGTCCTCTCCTGCGGGAAGGATTCTACCATAAAGCTTTGGGAAGTCGCCTCTGGAAGATTAGTCAAACAGTATCTCGG AGCTACACATACACAGCTAAGATGCCAGGCAATGTTTAATGAGACAGAAGAATTTATTCTTTCTGTAGATGAATTCAGCA ATGAGATCGTTATCTGGGATGCGATAACATCAGAAAAAGTAGCAAAGTGGCCTTCTAATCATGTCGGTGCACCCCGCTGG CTTGAACACTCACCAGTAGAGTCTGCTTTTATTTCATGTGGAACTGATAGGTCAGTTCGGTTTTGGAAGGAAAATCTATA G
Protein sequence (LotjaGi1g1v0212000.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLPEAKDGPVRSVIRTYYDHIQPINDLDFHPQGTILISGAKDQTIKFFDISKTNAKRSSRVIQDTHNVRSVSFHPSGDF LLAGTDHAIPHLYDINTFQCYLSANLLDVRYSSTGAMYVTACKDGAIRLWDGITANCVRTIIGAHGTAEATSAIFTRDQR FVLSCGKDSTIKLWEVASGRLVKQYLGATHTQLRCQAMFNETEEFILSVDEFSNEIVIWDAITSEKVAKWPSNHVGAPRW LEHSPVESAFISCGTDRSVRFWKENL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 265 | 263 | 2.0E-143 | – | |
| Gene3D | 3 | 266 | 264 | 8.6E-46 | ||
| SMART | 11 | 50 | 40 | 2.0E-7 | ||
| SUPERFAMILY | 13 | 263 | 251 | 1.7E-46 | ||
| Pfam | 14 | 50 | 37 | 2.3E-6 | ||
| ProSiteProfiles | 18 | 266 | 249 | 24.864 | ||
| ProSiteProfiles | 18 | 59 | 42 | 12.146 | ||
| SMART | 56 | 94 | 39 | 3.8 | ||
| Pfam | 66 | 89 | 24 | 0.0082 | ||
| SMART | 97 | 131 | 35 | 1.8 | ||
| Pfam | 107 | 131 | 25 | 0.26 | ||
| ProSiteProfiles | 109 | 140 | 32 | 9.472 | ||
| SMART | 134 | 175 | 42 | 8.1E-4 | ||
| Pfam | 136 | 174 | 39 | 8.0E-4 | ||
| ProSiteProfiles | 155 | 184 | 30 | 10.107 | ||
| ProSitePatterns | 162 | 176 | 15 | - | ||
| SMART | 223 | 263 | 41 | 0.8 | ||
| Pfam | 243 | 263 | 21 | 0.16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0212000.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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