Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0215800 |
| Transcript ID | LotjaGi1g1v0215800.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin conjugating enzyme E2; TAIR: AT1G14400.1 ubiquitin carrier protein 1; Swiss-Prot: sp|P25865|UBC1_ARATH Ubiquitin-conjugating enzyme E2 1; TrEMBL-Plants: tr|A0A1J7FPK6|A0A1J7FPK6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0215800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:47564053..47565503) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCAACTCCTGCTAGGAAGAGGCTGATGAGAGATTTCAAGAGGCTGCAGCAAGACCCGCCTGCAGGAATCAGTGGTGC CCCACAGGATAACAACATCATGTTGTGGAATGCTGTCATATTTGGGTGGGGATTCAAACTCCTTTACTTCATTTTTTTTT ATTTTCATTAATCACCTTGTTTAGTTATTGATGGATAAGCAATTTCTGCTTTGGATTGCAGTCCTGATGATACTCCATGG GATGGAGGTGAGTCAATTCTTGCTCTGGAAGGAACTCTTATCTTGAAACAATTTTGAAACATGAATCACATCTTGTGTGT TATACTTATACCAATTTTTTGTATTTGAGCTTACTTGGAATTCTTGCACTGGAAGGAACAGTTATCTGGTTTTGAAACAT GTCTCACATCTTGTGTGTTATAATTGTACCAATTTGAGGAGTTTACTCGAAATATTGTTGTGAAATGTATCAAAGCCTGT TCATACTCAATGATTTTAAGTTAAATAGATATCTAGGTATTAAATGAAATTTTTTCTAGGGCTGGCAATTAAATGTTGCT ATGTAGTTTTATGGCATTTTATTAACACCCCCCCCCCCCCCAAACCCTCCTCCCTCTCTCCCTCACACACAAACAGTTCT GATTCTTCATAGTATATTTTCTTGTTCGGATTTGTCTCCTTTTTAGTGGCAAAGTCAATTTAGAGGATAAAAAGGGCTAT TACAGCATTTGGCTGAATATTGACCATGGCGGTGCCATGCCAGATATTTGGCAGCGTTTTTTGTTATGCATGTGAAAGCA TATGATTATAATTACGACTGATAATTACTCAATCAACGATTTTGAAGACTTACTTTACCATCTAAAGTGACTCCTTGCCC ACTCTAGGGGAGTCAAACTCGTCTTGTTGATACTCTATAACTGAACCTATTATAAATTGTATGATTGTATCTACACTTTC TGACTTTCTTGAGTAATATATTTTATATCACTAGAAAGTATTAGCATAATTCTTTTTTCCTCCATGGATTTGTGCTATAC TCTAGTTTTCAAAAACTAAATGAAAATTGAGTACGCATGGTGGGGTAGTCTGTGTATTTTCTGTATCTTCATATTACAGT ATTGTGGTTGTATTTACACTGACATGTTGACTTTTGAGTTATTCAGGTACGTTCAAGTTGACTCTCCAATTTAGTGAGGA TTATCCAAATAAACCACCAACTGTACGATTTGTGTCTCGAATGTTTCATCCTAATAGTAAGTTTTTAGGTGTAAAATCTT TACTTCTTATGATTGAATTAGCACTGTGGATGTACACTAATGTCATTTTTTCCACTTTGTATAGTTTACGCAGATGGAAG TATTTGTTTGGATATATTACAAAATCAGTGGAGTCCTATATATGATGTAGCTGCTATACTCACATCTATCCAGGTATCTT CTAGTTTTTAA
CDS sequence (LotjaGi1g1v0215800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAACTCCTGCTAGGAAGAGGCTGATGAGAGATTTCAAGAGGCTGCAGCAAGACCCGCCTGCAGGAATCAGTGGTGC CCCACAGGATAACAACATCATGTTGTGGAATGCTGTCATATTTGGTCCTGATGATACTCCATGGGATGGAGGTACGTTCA AGTTGACTCTCCAATTTAGTGAGGATTATCCAAATAAACCACCAACTGTACGATTTGTGTCTCGAATGTTTCATCCTAAT ATTTACGCAGATGGAAGTATTTGTTTGGATATATTACAAAATCAGTGGAGTCCTATATATGATGTAGCTGCTATACTCAC ATCTATCCAGGTATCTTCTAGTTTTTAA
Protein sequence (LotjaGi1g1v0215800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFSEDYPNKPPTVRFVSRMFHPN IYADGSICLDILQNQWSPIYDVAAILTSIQVSSSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 110 | 110 | 1.4E-78 | – | |
| PANTHER | 1 | 110 | 110 | 1.4E-78 | – | |
| SUPERFAMILY | 1 | 110 | 110 | 3.67E-47 | ||
| Gene3D | 1 | 114 | 114 | 3.4E-52 | ||
| SMART | 7 | 114 | 108 | 6.0E-31 | – | |
| CDD | 7 | 111 | 105 | 1.74187E-55 | ||
| ProSiteProfiles | 7 | 110 | 104 | 37.176 | ||
| Pfam | 8 | 111 | 104 | 7.1E-40 | ||
| ProSitePatterns | 77 | 92 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0215800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…