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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0215800 |
| Transcript ID | LotjaGi1g1v0215800.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin conjugating enzyme E2; TAIR: AT2G02760.1 ubiquiting-conjugating enzyme 2; Swiss-Prot: sp|P42745|UBC2_ARATH Ubiquitin-conjugating enzyme E2 2; TrEMBL-Plants: tr|D7TND2|D7TND2_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0215800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:47564053..47569683) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCAACTCCTGCTAGGAAGAGGCTGATGAGAGATTTCAAGAGGCTGCAGCAAGACCCGCCTGCAGGAATCAGTGGTGC CCCACAGGATAACAACATCATGTTGTGGAATGCTGTCATATTTGGGTGGGGATTCAAACTCCTTTACTTCATTTTTTTTT ATTTTCATTAATCACCTTGTTTAGTTATTGATGGATAAGCAATTTCTGCTTTGGATTGCAGTCCTGATGATACTCCATGG GATGGAGGTGAGTCAATTCTTGCTCTGGAAGGAACTCTTATCTTGAAACAATTTTGAAACATGAATCACATCTTGTGTGT TATACTTATACCAATTTTTTGTATTTGAGCTTACTTGGAATTCTTGCACTGGAAGGAACAGTTATCTGGTTTTGAAACAT GTCTCACATCTTGTGTGTTATAATTGTACCAATTTGAGGAGTTTACTCGAAATATTGTTGTGAAATGTATCAAAGCCTGT TCATACTCAATGATTTTAAGTTAAATAGATATCTAGGTATTAAATGAAATTTTTTCTAGGGCTGGCAATTAAATGTTGCT ATGTAGTTTTATGGCATTTTATTAACACCCCCCCCCCCCCCAAACCCTCCTCCCTCTCTCCCTCACACACAAACAGTTCT GATTCTTCATAGTATATTTTCTTGTTCGGATTTGTCTCCTTTTTAGTGGCAAAGTCAATTTAGAGGATAAAAAGGGCTAT TACAGCATTTGGCTGAATATTGACCATGGCGGTGCCATGCCAGATATTTGGCAGCGTTTTTTGTTATGCATGTGAAAGCA TATGATTATAATTACGACTGATAATTACTCAATCAACGATTTTGAAGACTTACTTTACCATCTAAAGTGACTCCTTGCCC ACTCTAGGGGAGTCAAACTCGTCTTGTTGATACTCTATAACTGAACCTATTATAAATTGTATGATTGTATCTACACTTTC TGACTTTCTTGAGTAATATATTTTATATCACTAGAAAGTATTAGCATAATTCTTTTTTCCTCCATGGATTTGTGCTATAC TCTAGTTTTCAAAAACTAAATGAAAATTGAGTACGCATGGTGGGGTAGTCTGTGTATTTTCTGTATCTTCATATTACAGT ATTGTGGTTGTATTTACACTGACATGTTGACTTTTGAGTTATTCAGGTACGTTCAAGTTGACTCTCCAATTTAGTGAGGA TTATCCAAATAAACCACCAACTGTACGATTTGTGTCTCGAATGTTTCATCCTAATAGTAAGTTTTTAGGTGTAAAATCTT TACTTCTTATGATTGAATTAGCACTGTGGATGTACACTAATGTCATTTTTTCCACTTTGTATAGTTTACGCAGATGGAAG TATTTGTTTGGATATATTACAAAATCAGTGGAGTCCTATATATGATGTAGCTGCTATACTCACATCTATCCAGGTATCTT CTAGTTTTTAACTATAGTGAATGATACTTGTATTCCTTTTGTATATTTTGCAAATGAACTAAAGAAACATATCTTGTACA TCGTTCAACCTATGTCAGAAGTTTCAGTTTTCAATCCAAGAAAGTTATACTCGTCTCTGCGACATTAGATTCTTGTATCT CTGGATCTGTAGTTCTGTACTGTTTCATACTTTTGTGCACAGATGGAAATGAAATCCAGTCACCCTGCACATGTTAGGAA TCCATGACGGATAGAGAGAAGAAAAGAGAACTCTTATCACTTAAATGAAAATGAACAAAACAAGGAGAAAGAGTTCTCCT ATTCCTCTTTTATAAAAACTTTCTAACTTATCTCCATATACCCCTATTTATCTTACTAATACCCCCTCTGGCCGACTTAC CTGTCTCACTGTCCCTATCTGATTTCCCCCAATTATGTCTTCCCAATTGTCTACACTAACAATCCACCCCTCTTCCCCAA AAGGTGATTGTAGTGAATAACCAAATATAATAGTTGGACTAAGTCAAATTGGTAATTTTTCTTGCATGTCCCTTTGGAGC CCAGGTATCACATATACCCCCAAAATAAAAAGCCTTGAAGACTAGAAGAAAATCCCCCTATACCTAACAAGATTAAGTGA ATACCCAAAAGTGTAGTCATTTTATTACGCCCTGAGTTTAACCTTGCCCCCAAAGTTGAAATTATGGAGGTGGAAATGAA CCTGAGTTAAATCCTCCCAAATGGCTTTTCGAACAGCCTTTTTTAGGTTGGATTCTTAAACAGCATGGTACATGTGAGAG ATTGTTCTAGGAGCTGATGCTGAAATGCAAATGCAGTCATCTGCTTGTGGATGAAATATATTTTCAATGGACATTTTGGC AATTCATATACTTGTGCTTCACCCCTTAGTTCAAAAATTGGCCTCAGTTAGCGGGTTTACTATGTCCCAACACCGTTTCG TGAATCCAAATCTGAGAAGATTAGGCCTCATCCCTTAAGGTTAAAATACTGAACCATGTTCTGGGATTTCGTCAAGCCCC TTATTCCATGATCCTTAGGATTTGTTGGTGTTGCTGTCCTGCACCGGGTCTTGCTCCAATGAACATGTGAGTGAATGATT TTCCACACCATAAAAAAATCTCACAACGTCCCTGTTATCTTTGTCATGAACCTGTCATTCTAAAATCTAACGTTGTTTGG TGAAAGAACATAGTTTCCCCATCTATCATTATCATCCTTCTCTCTCTCTCTCATTTCTATGTAACTTTAAATTAGTGTTG TATTTTGATGTGTTGTATCTTTTCTGTTTCCTATCATATTCAAGTTTTGTCGTATCCCAGATACCATGATGTGTCAGTAC TCAGTCCTTGCAGGGATAGAACCATCAATAAGGAAATATGATGTAACATGTGAAGTTGAGAAGAAATAAAAGTAGAAAAA TAAAAACTGGAAGATTCAAAAGCTAATTTGTAATAGTGTGTGTGGATTTTCCTTAGCAAGGCTTAAAAGCACTTTCAAAG AAATTCATGTCTCAATAGGAAGTGATTTTATGTGAACGTAACGGAAATCCAAACACACTATTGAGCTTCTTTTGGGTCTT TTGAATACAGCCAATTGCATTTTACTGGTTTTAGTTTCACCTCTGGTCCCCTGTTACTGGTGGTGGATCTTGACAACCTC CAGTTAGGGATGTCAATCAGAAGGGACAGGGAGTGTTCCCTTGCCTTCACTAGTAAATTTGTTTCCTGTCTTTTCCCTTG TCCCTGCCATAGGGGGAATCCCCATCATAGCCTATCTCTAATAAGAAAGCAGGGATTCACGGTTATATGTATCTAACTAA ATTTAGGGGGGAAATAATCTAGAACAGTGTTATCAAATCGCGATCGCGGACCATTGCGGTGAGCCAAAAATCCGCTATTT CGGTCGCTATTTGGCGGCGAATAGCGGAAATAGCGGCGTCGCGATTAGCCAAAAATCCGCTACGCTATAGCGGCATAGCC GCTATTTGATAACACTGATCTAGAAATGGCCTAGCCAAAAGAATAGAATGTAGAAAGTGTAGCATCACTGTCCTCATCTT TGTCCTACAACATAAGATTTCAGAAGTATATAAGTTTAGTAGTATACAGCTGTCTCCAACAAGCATAAAAAAAAAACAAG GAGCAACATGAAATTCAACAGTAAGTTTAATAGTTTTCAGTTCAAATCATGATATTAAAATGAAACTTAAATTTCTAAAA CGTGTGTGCATGCATGTACATGTCCGTGTTGTGTTGTTTTTACTAAAAGACATTTTGTAGTATGGTTAATGGACCTCTAG CCCTGTTTATTAATAGGGAGAAACTGCATCCCTACCCCATAAGGGTAGGAAACCCTCCCTTTTCATTTCTTTTTAACTCG AGGCGGGAATAACATCCCTCCCGGGGTCAACAATATATAATGTGTAAATTCAATAGTTAACTGGGGAATATCATTCACAA GTTGAGGAAGTTGGAATGAGATTAACAAAGAGGGTGGCTCAAAGGATTGAGAAGATAGTGATGGTTCTTCATTGGGAATA GGAGATTCTAGGAGAGAACATCTGTAACTGGGTAGTTTACTGGAAGCCTATGAAGTAGGGGGACTTAGGGATTATAATTT GTAAAACTAGTAGTGGCTAAACCTAACTGATTGTGCTACTTCCCTTCGGAATCGTGCTCCCTTTGAAATAGGGTGATAAG GACTGTGGTTTACTGTCACAATGGTTGGTGATGCCAAGCTTGGGGTCAATACTATGTAGATGCTGGAAGTTTATTTTGCT GCTAAGCCCTCATTTTATCCTTTGACCTGTGCTTTTTCTGAGCGAAGAAGTTGGGGAAATCTCTTTTCTCCATCCATGCA TACGACATTAATTATTTCATTTTCTATTGAACTTTTCCTTGAAATTTTAGTTTTTCTCACAACTGATTTCTATACTAATT TCTAAGATGTTTTTGCTTAAACCAAACTTCATTCAGATTTATAATCTTTCTCTGCAAATTTCAGCTTTAAGTAAATCCTC TTAGAAATCAACTCCTCTCCGAAGTCGAGGCTTTTGTTTGGATATTGTATTTGACAAGATTAAATAGCAATTATTTGGTA TACAATACAGATACTCACACTACTTGAGTTCGTTTTTATGCTATGTTCTTCACAAGTGAAAAAGCAGCTACCACATTTTG TACTATAAGGTAGCTTGGCAATTTAGGTTCTGTTTGGATGATGGGTTTAGGAGAGCAAGGGGAGGAAGTTAAAGGCTTAT GGTTAGCTTAATAGCCTTCCATTTCTTGTAAAAAGAGGGGAAAAGAATGAGGGATTTTCAGACTCTAAAGCCCTTCTCTT ATGCAGTTATGCATATTTGGAGTTCCCCAAATTTGGAGGGGTCTTGGATGAGAAAACAAATATATATATATATATATATA CACATATATATATATACATATATATATATATGCACACTTCCCCCGTTCAAGTTGCAAAAATAAATTTGTAATTTACATTG TAATTAATCATTTAAATTTGACAAACCTTCCGTTTCCTTTCCTTTGTTTTCCTTACTCTTACTTCCCCTTGAACCTTGTT CTTTCCTGTCCCTCCAAACTCCTTTGGAAGTCGCCTTCTCTGTCAATTGCAGAGCCCCTTGGAGTAGGAGGGATATTAGG CCCTTTGGAAATGTGTTATGCTTTATGGAACATGCGTATTTTCTTACTTCCCTCTTACTGATCTTACAAGCAATCGTGAT CCTAATTCCTAACGGAACAAGTTTTCTGTTGAGATGAGTATTACTCAGGCACAACAAACTAGCCAAACAGTGCATCTATG AATAAACAGTAAACACTGAACACACTTGGACACCATTGTGCTTGTCCAAGGGGTCATCTTCCAAAGTCTAGTGTTTGGCA TAGCATTCATATCTAAATTGGCAGATGTTTTCATTCATATCTAAATAAATTCTTTTACCATATATTTTCTCTTAATGGTT TTCTTTTTCCTGTGTTGATCCACATGTTATAATTATTTTCTGAAATCATTCTTTCTTGACAGTCATTGCTTTGTGATCCC AACCCAAACTCTCCTGCAAACTCCGAAGCAGCTCGAATGTTTAGTGAGAACAAGCGTGAGTACAACCGCAGAGTGAGGGA AATTGTGGAGCAGAGTTGGACAGCAGACTAA
CDS sequence (LotjaGi1g1v0215800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAACTCCTGCTAGGAAGAGGCTGATGAGAGATTTCAAGAGGCTGCAGCAAGACCCGCCTGCAGGAATCAGTGGTGC CCCACAGGATAACAACATCATGTTGTGGAATGCTGTCATATTTGGTCCTGATGATACTCCATGGGATGGAGGTACGTTCA AGTTGACTCTCCAATTTAGTGAGGATTATCCAAATAAACCACCAACTGTACGATTTGTGTCTCGAATGTTTCATCCTAAT ATTTACGCAGATGGAAGTATTTGTTTGGATATATTACAAAATCAGTGGAGTCCTATATATGATGTAGCTGCTATACTCAC ATCTATCCAGTCATTGCTTTGTGATCCCAACCCAAACTCTCCTGCAAACTCCGAAGCAGCTCGAATGTTTAGTGAGAACA AGCGTGAGTACAACCGCAGAGTGAGGGAAATTGTGGAGCAGAGTTGGACAGCAGACTAA
Protein sequence (LotjaGi1g1v0215800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFSEDYPNKPPTVRFVSRMFHPN IYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 152 | 152 | 7.5E-111 | – | |
| PANTHER | 1 | 152 | 152 | 7.5E-111 | – | |
| Gene3D | 1 | 152 | 152 | 5.5E-72 | ||
| SUPERFAMILY | 1 | 150 | 150 | 2.49E-63 | ||
| SMART | 7 | 150 | 144 | 1.1E-68 | – | |
| CDD | 7 | 145 | 139 | 4.08351E-75 | ||
| ProSiteProfiles | 7 | 139 | 133 | 47.393 | ||
| Pfam | 8 | 144 | 137 | 8.3E-53 | ||
| ProSitePatterns | 77 | 92 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0215800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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