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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0217700 |
| Transcript ID | LotjaGi1g1v0217700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Kelch repeat-containing protein; TAIR: AT1G74510.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9CA63|FBK29_ARATH F-box/kelch-repeat protein At1g74510; TrEMBL-Plants: tr|A0A0S3RG77|A0A0S3RG77_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0217700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:48194009..48195334) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTGGAGGGTCCATCGTTTCTCGTTTCAAGGGACTTACCAAGCTCATGTGAGCAAGAGACAGAGTGGATTTACAATAC TTGCCGTGTGATGGAGCTCACGAACAATAAGCGTCGACTGGAACTAGAGGAAGAAGCTGTGTTGAGAAAGTCATGCAAGC TTTCAGATGCTGCTGAGGAACAAGAAACAAGGAAGAATTTCCTTGAGCTTTCCCTTTCCCTCAACCAATCGAATGACCAA AACCGTGCAGGTGATCAATCAGACTCAAGTTCTCTTATCCACCAATTAGGCCGGGACATAACAATTAACTGTCTCCTACG ATGCTCGAGATCTGATTACGGTTCGATTGCCTCGTTGAACCAGAGTTTTCGTTCTCTCATCCGGAGTGGAGAGCTTTATC GGCTGAGGCGGCAAATGGGTATCATAGAACACTGGGTTTACTTCTCTTGCAATCTTCCTGAATGGGAGGCATTTGATCCG AACAGCGGCAGGTGGATGCGCTTGCCGAGAATGCCTTCTAATGAATGTTTTATCTGTTCTGATAAGGAGTCACTGGCTGT TGGGACAGAGCTTCTTGTTTTTGGAAAGGAAATTATGTCTCCTGTCATTTACAGATATAGCATTCTGATGAACTCATGGT CATCTGGTATGGAAATGAACATCCCTAGATGCTTGTTCGGTTCCGCCAGCCTTGGAGAAGTCGCCATATTAGCCGGCGGT TGTGACCCACACGGCAACATCTTGAGCTCTGCTGAGCTTTATAACTCAGAAACTGGAACCTGGGAGATTCTTCCAAACAT GAATAAAGCAAGAAAGATGTGTTCTGGTGTGTTTTTAGATGGGAAATTTTATGTCATAGGTGGGATTGGGATAGGTTGCT CAAAGCAGTTAACATCCGGTGAGGAGTTTGATCTGCAGACGAGAAAATGGCGTGAAATTCCCAACATGTTCCCGAGGAGA AATGGAGGATCTGGGGTGACTGAGTTACCACCTGCCGCAGAGGCACCTCCTTTGGTTGCAGTTGTAAATAATGTACTTTA TGCTGCAGATTATGCACTGCAAGAGGTGAGGAGATACTATATAGAAAATAACTCATGGGTTACTATTGGAAGATTACCGG AGCGGATAGTCTCGATGAATGGCTGGGGATTAGCCTTTCGAGCTTGTGGGAATCGCCTAATTGTTATTGGCGGTCCAAGA GCCTTGGATGGAAGGGTGATCGAAGTTAATGCTTGTGTCCCCGGCGAAGGTGAACCAGAGTGGAACCTGCTAGCCAGCCG GCAATCCGGGAGCTTCGTGTATAATTGTGCGGTGATGGGATGCTGA
CDS sequence (LotjaGi1g1v0217700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGAGGGTCCATCGTTTCTCGTTTCAAGGGACTTACCAAGCTCATGTGAGCAAGAGACAGAGTGGATTTACAATAC TTGCCGTGTGATGGAGCTCACGAACAATAAGCGTCGACTGGAACTAGAGGAAGAAGCTGTGTTGAGAAAGTCATGCAAGC TTTCAGATGCTGCTGAGGAACAAGAAACAAGGAAGAATTTCCTTGAGCTTTCCCTTTCCCTCAACCAATCGAATGACCAA AACCGTGCAGGTGATCAATCAGACTCAAGTTCTCTTATCCACCAATTAGGCCGGGACATAACAATTAACTGTCTCCTACG ATGCTCGAGATCTGATTACGGTTCGATTGCCTCGTTGAACCAGAGTTTTCGTTCTCTCATCCGGAGTGGAGAGCTTTATC GGCTGAGGCGGCAAATGGGTATCATAGAACACTGGGTTTACTTCTCTTGCAATCTTCCTGAATGGGAGGCATTTGATCCG AACAGCGGCAGGTGGATGCGCTTGCCGAGAATGCCTTCTAATGAATGTTTTATCTGTTCTGATAAGGAGTCACTGGCTGT TGGGACAGAGCTTCTTGTTTTTGGAAAGGAAATTATGTCTCCTGTCATTTACAGATATAGCATTCTGATGAACTCATGGT CATCTGGTATGGAAATGAACATCCCTAGATGCTTGTTCGGTTCCGCCAGCCTTGGAGAAGTCGCCATATTAGCCGGCGGT TGTGACCCACACGGCAACATCTTGAGCTCTGCTGAGCTTTATAACTCAGAAACTGGAACCTGGGAGATTCTTCCAAACAT GAATAAAGCAAGAAAGATGTGTTCTGGTGTGTTTTTAGATGGGAAATTTTATGTCATAGGTGGGATTGGGATAGGTTGCT CAAAGCAGTTAACATCCGGTGAGGAGTTTGATCTGCAGACGAGAAAATGGCGTGAAATTCCCAACATGTTCCCGAGGAGA AATGGAGGATCTGGGGTGACTGAGTTACCACCTGCCGCAGAGGCACCTCCTTTGGTTGCAGTTGTAAATAATGTACTTTA TGCTGCAGATTATGCACTGCAAGAGGTGAGGAGATACTATATAGAAAATAACTCATGGGTTACTATTGGAAGATTACCGG AGCGGATAGTCTCGATGAATGGCTGGGGATTAGCCTTTCGAGCTTGTGGGAATCGCCTAATTGTTATTGGCGGTCCAAGA GCCTTGGATGGAAGGGTGATCGAAGTTAATGCTTGTGTCCCCGGCGAAGGTGAACCAGAGTGGAACCTGCTAGCCAGCCG GCAATCCGGGAGCTTCGTGTATAATTGTGCGGTGATGGGATGCTGA
Protein sequence (LotjaGi1g1v0217700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLEGPSFLVSRDLPSSCEQETEWIYNTCRVMELTNNKRRLELEEEAVLRKSCKLSDAAEEQETRKNFLELSLSLNQSNDQ NRAGDQSDSSSLIHQLGRDITINCLLRCSRSDYGSIASLNQSFRSLIRSGELYRLRRQMGIIEHWVYFSCNLPEWEAFDP NSGRWMRLPRMPSNECFICSDKESLAVGTELLVFGKEIMSPVIYRYSILMNSWSSGMEMNIPRCLFGSASLGEVAILAGG CDPHGNILSSAELYNSETGTWEILPNMNKARKMCSGVFLDGKFYVIGGIGIGCSKQLTSGEEFDLQTRKWREIPNMFPRR NGGSGVTELPPAAEAPPLVAVVNNVLYAADYALQEVRRYYIENNSWVTIGRLPERIVSMNGWGLAFRACGNRLIVIGGPR ALDGRVIEVNACVPGEGEPEWNLLASRQSGSFVYNCAVMGC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 441 | 441 | 2.8E-227 | – | |
| PANTHER | 1 | 441 | 441 | 2.8E-227 | – | |
| Coils | 30 | 50 | 21 | - | – | |
| Gene3D | 146 | 435 | 290 | 1.4E-42 | ||
| SUPERFAMILY | 150 | 438 | 289 | 5.36E-48 | ||
| Pfam | 222 | 268 | 47 | 1.0E-10 | ||
| SMART | 234 | 281 | 48 | 1.5E-7 | ||
| Pfam | 270 | 316 | 47 | 2.6E-8 | ||
| SMART | 282 | 329 | 48 | 0.23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0217700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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