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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0219300 |
| Transcript ID | LotjaGi1g1v0219300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB family protein; TAIR: AT5G62470.2 myb domain protein 96; Swiss-Prot: sp|P81392|MYB06_ANTMA Myb-related protein 306; TrEMBL-Plants: tr|A0A0L9VN26|A0A0L9VN26_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0219300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:48624149..48626295) extracted from Lotus japonicus Gifu genome v1.2.
ATCTTCTCTTGTTTATATCTGTCTATATATATACATACACGAGCCTAATGCAACAGACAAGGCAGCCCCAGTTCTATACT CTTGTCCCTGCATTTCAAAGAAAGCAAGGAATAAAGAGAAGAGAAAGATTATTAGAATCTCTTTCTGAGAATGAATTAAG AGTAGTTGTATAACATAATAACAATCAGTTTCATTTCTCTCTTATAAAATGGTGAGGCCACCTTGCTTTGAAAATTTGGG TACTAAGAAAGGGCCTTGGACTCCAGAGGAGGACATCATCTTGGTGTCTTACATTCAAGAACATGGACCAGGGAATTGGA GATCAGTTCCCAAAAACACAGGTAAACTCAACAGCATGAATATCTAATTTTAATTTCCTTCATTTATTCATTTAGGTGCA TATTTTCATTTCTATGCAAAAGCATGTGTATATATGTGAATTATTACTTATGTCGGTAAGATATGTGTATCTGGTTTCTT ATGTATTGAATTTTGGTTTGTCTCAGGTTTGATGAGATGCAGTAAAAGCTGCAGACTTAGATGGACTAACTATCTTAGAC CGGGTATCAAACGAGGCAATTTCACTGATCATGAAGAGAAAATGATAATCCACCTCCAAGCCCTTTTGGGCAACAGGTAC TAATACTACTCTCTGCTCTCTTCTTCTTTTTCTTGCCCCAAAAGTTGTGTTAAATAGTATTAAATTTGTTTCTAGTAATG TAAAAAAAAATTAAAATTGACTTCTGATTCCAAACTTATATTTAATGAAATCAAATACTCTTATATTTCTGATTTTGGAA ACTGGGACTATCTTTGTTCTTAAAAAGAACTAATGAAAAACCAGGGCAATTTTGTTCACAACATGAAATCAATAAGGAAA GATACAAAATTTAAGCCCGGGGCGGGGGTGTTTAATTCTTTGGTATCAGCACATTTTTACTCAAAATCAATTCTGGCACG TAAAAGCTTCTCAGAAACTTCTCTACCAAAATTAATTTTGACTGCAGAATCAATCATAGAATGATGAGATGATTATATTT ATAATTGGTGCAGATGGGCTGCAATAGCTTCCTACCTTCCACAGAGAACAGACAATGACATAAAAAACTATTGGAACACC CATTTGAAGAAAAAGCTGAAGAAGAATCAAAAAGGGGATGGAGATGGTGAAACCAATGAAGGACACTCTATTTCACAGGA AAAGGGTCAATGGGAGAGAAGGCTCCAAACAGATATCCACATGGCCAAACAGGCCTTATGTGAGGCACTGTCCCTTGACA ACAACAAGCCAACCCTTATTTTGCAAGACACCAATAACAATACCACAACTCAATCACCCACATACGCTTCAAGCGCTGAG AACATAGCAAGATTGCTAAAAAACTGGATCAAGAAACCGCCACCAAATGAAACAAATTCAGGTAATTCCTTCAGCAAATT GGTAACTACAGGGTCCAGTTCTAGTGATCAAGGGGCACAGAGCAGCACCACATGCGCAACCGATCACCATTTCGACTCGT TCTTCAGCTTTAACTCTGATCGTTCTCGATCGGTGTCAGCTGAAGAAAACGCTAACCTTGCAACTGATTTTGGCTTCTTC GAAGAAGAAACCAAGCCGAACCTTCAGGAAACCACGCAAGTCCCGATCACGTTGCTGGAGAAGTGGCTTTTTGATGAAGA TCTAATGAACATGCCACTGCAGGAAAGTACAGCAGGGCTGTTTTAGAATCAGAAATGATGTTAGGACATACGTTTTGGAT TGATCGGTTTTGCGACGGTTTTTCAATTAACTGCTGCTAATGTTTGCGGTGCTTCTAAAGTGAATGTTTGTGGAATGCTC GCACAAAAGGCATGTGTCTATGTATCACCTCTCAACACATGGTTTTGCAAAGGTTTTTAATTAGTCTGTCGCTAATGTTT GCCGTGGTTGAACATCGTCACTAAAGTGCGTGTTTGTGGGATACTAGCACAAAAAGCACGTGTCTATGTATAACCTCTCA AGACACGGTTTTGCAAATGTTTTTAATTAACTGTTGTTAATGTTTGCCGTGGTTGAACATCGTTTCTAAAGTGCATGCTC GTGGGATGCACGAAGAAAAAATGTGTGTCTATATATCATTATTAATAGCCACCAAGGTTTTTTTTTT
CDS sequence (LotjaGi1g1v0219300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAGGCCACCTTGCTTTGAAAATTTGGGTACTAAGAAAGGGCCTTGGACTCCAGAGGAGGACATCATCTTGGTGTC TTACATTCAAGAACATGGACCAGGGAATTGGAGATCAGTTCCCAAAAACACAGGTTTGATGAGATGCAGTAAAAGCTGCA GACTTAGATGGACTAACTATCTTAGACCGGGTATCAAACGAGGCAATTTCACTGATCATGAAGAGAAAATGATAATCCAC CTCCAAGCCCTTTTGGGCAACAGATGGGCTGCAATAGCTTCCTACCTTCCACAGAGAACAGACAATGACATAAAAAACTA TTGGAACACCCATTTGAAGAAAAAGCTGAAGAAGAATCAAAAAGGGGATGGAGATGGTGAAACCAATGAAGGACACTCTA TTTCACAGGAAAAGGGTCAATGGGAGAGAAGGCTCCAAACAGATATCCACATGGCCAAACAGGCCTTATGTGAGGCACTG TCCCTTGACAACAACAAGCCAACCCTTATTTTGCAAGACACCAATAACAATACCACAACTCAATCACCCACATACGCTTC AAGCGCTGAGAACATAGCAAGATTGCTAAAAAACTGGATCAAGAAACCGCCACCAAATGAAACAAATTCAGGTAATTCCT TCAGCAAATTGGTAACTACAGGGTCCAGTTCTAGTGATCAAGGGGCACAGAGCAGCACCACATGCGCAACCGATCACCAT TTCGACTCGTTCTTCAGCTTTAACTCTGATCGTTCTCGATCGGTGTCAGCTGAAGAAAACGCTAACCTTGCAACTGATTT TGGCTTCTTCGAAGAAGAAACCAAGCCGAACCTTCAGGAAACCACGCAAGTCCCGATCACGTTGCTGGAGAAGTGGCTTT TTGATGAAGATCTAATGAACATGCCACTGCAGGAAAGTACAGCAGGGCTGTTTTAG
Protein sequence (LotjaGi1g1v0219300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVRPPCFENLGTKKGPWTPEEDIILVSYIQEHGPGNWRSVPKNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIH LQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKNQKGDGDGETNEGHSISQEKGQWERRLQTDIHMAKQALCEAL SLDNNKPTLILQDTNNNTTTQSPTYASSAENIARLLKNWIKKPPPNETNSGNSFSKLVTTGSSSSDQGAQSSTTCATDHH FDSFFSFNSDRSRSVSAEENANLATDFGFFEEETKPNLQETTQVPITLLEKWLFDEDLMNMPLQESTAGLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 286 | 283 | 4.2E-121 | ||
| PANTHER | 4 | 286 | 283 | 4.2E-121 | – | |
| ProSiteProfiles | 9 | 65 | 57 | 24.121 | ||
| SUPERFAMILY | 11 | 108 | 98 | 1.91E-30 | ||
| Gene3D | 12 | 67 | 56 | 1.4E-19 | – | |
| SMART | 13 | 63 | 51 | 4.7E-14 | ||
| Pfam | 14 | 61 | 48 | 1.9E-15 | ||
| CDD | 16 | 61 | 46 | 2.67494E-12 | ||
| SMART | 66 | 114 | 49 | 4.0E-15 | ||
| ProSiteProfiles | 66 | 116 | 51 | 19.216 | ||
| Pfam | 67 | 112 | 46 | 3.2E-13 | ||
| Gene3D | 68 | 141 | 74 | 2.9E-20 | – | |
| CDD | 69 | 111 | 43 | 1.48411E-10 | ||
| MobiDBLite | 115 | 140 | 26 | - | – | |
| MobiDBLite | 118 | 140 | 23 | - | – | |
| MobiDBLite | 200 | 234 | 35 | - | – | |
| MobiDBLite | 203 | 234 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0219300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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