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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0230700 |
| Transcript ID | LotjaGi1g1v0230700.4 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectate lyase; TAIR: AT5G63180.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22; TrEMBL-Plants: tr|A0A1J7GII6|A0A1J7GII6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0230700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:54021546..54023803) extracted from Lotus japonicus Gifu genome v1.2.
TTACTTACATTGCATCAATTATTTCTTATTTTTCTCTTTTTTCTCACCATCGGTGTTTGTTAGTGTCTGCACCCTACAGA TGTTTATAAATTAAATCGTTGTGGTTAACTTGAAAATTATTGCGGATTAGCTAGAAGTATATTAGAAATAAAAACTTTGT ATCAATAAATTTATGAAAATTTTTGGAATGCAGGAAAATCAATGCCTCTATAGCTAGGAGGAACTTGGGGTACCTATCAT GTGGGAGTGGAAACCCTATTGATGATTGCTGGAGGTGTGACACCAATTGGGAGAACAATAGGAAAAGGCTAGCAGATTGT GCAATAGGATTCGGCAAGAACGCAATTGGAGGCAGGGACGGCAAGATCTACGTAGTGGACGATGCCAGTGACGACGACCC CGTGACCCCAAAGCCGGGTACGCTCCGGCACGCGGTGATCCAGGACGAGCCGCTCTGGATCATCTTTGCCGGAGACATGG TGATCAAGTTAAAAGAAGAGCTGATCATGAACTCTTTCAAAACCATTGACGGCAGGGGTGCGAGCGTGCACATTGCTGGC GGTCCTTGCATAACAATACAGTACGTGACCAATGTGATCATTCATGGGATACACATCCATGATTGCAAGCAGGGTGGGAA TGCTATGGTGCGGGACTCCCCACGACACTATGGGTGGAGGACCATATCAGACGGTGATGGCGTGTCGATCTTTGGAGGGA GCCAGGTGTGGGTGGACCATTGCTCGTTGTCGAATTGCAAGGATGGATTGATCGATGCGATTCATGGGTCCACCGCAATT ACCATATCCAACAATTACATGACTCACCATGATAAAGTCATGTTGTTGGGTCACAGCGATTCTTACACAGATGACAAGAA CATGCAAGTCACAATCGCTTTCAACCACTTTGGTGAAGGTCTTGTTCAAAGAATGCCAAGGTAAAAAAAAAATCATTTTT TATTTCCATTCCCAATTTAACTCCGCAATTACGGAATATCTTTGAAAAAAAAAACCTACAATTTGTCAAACTTGTCAAAA GTCTAATATAATATTAAATACTAAACTTCATTGCATTTTTGTCCATATAATTGCAGCAACATACATGTGATTTTAGTTTC AACGGCTAAGTTATTCTATTTTCAAAATGAACAAATTTTATCAATGATGTTAACTTGTTGCTCAATAACTAATAAAAAAT GACATTTATCACAATTTTTTTATGGTGAAAATGACATAGATTAGCTCAGATTATTATTCACAGAAAAAATTTGTGATCCA CATCAACATTTTTCGTTAGTTTCTGATAAAAAGTTAACATTTAGACTAAATGTAGATCAATTGTAAAAATAGAATAACTT AAGCAATTGAAACTATGGCTAAAACTATAGTTTGGAACCAAAATCACATTTTTCTAAAACTATGGTGATCCGAGTGTAAT TAAGCTTTAATATTAAAATAAGTATAGTGTAAACTTTATATATCTTTTGCTATTCTAAAAATTTGATTAATTGCATCTAT GAACATTGAATTGACATAAAAATTACTCATAGCGTCTACCCTAGTGCTCAACAAGAAATATTATTGTAATAACATGGGCC GTCCATTTTCTTTTAAGAAAAAGGTGACAAAAGGGAAAAAGGAAAGGGACATTGATCAATGTGGGACTGAATGGGTTGCT TTTTGTCATTTTCTCTCAGTTGCATGTTACTTTTGTGGGACCAACATTGCTTAGGATTGAAAAAAATTACTTTGCGAAAT TTGCAGGTGTAGGCTTGGATACTTCCATGTGGTGAACAATGACTACACTCACTGGGAAATGTATGCCATTGGAGGAAGTG CTAACCCCACCATCAACAGCCAAGGCAATAGATTTGTTGCACCCGATGACAGATTTAGCAAAGAGGTAAAACAGAGTAAT AATTTAGCTCTTAAATCTCTTAAACCGTTGTCCCTAATAAAATAATTAAGAATGCTATAATTAAAGATCAATGATGTTGA TTTTCCAGAAAATGAAAAATGGCTGAAATTGTGCAGGTAACAAAGCATGAAGATGCCCCAGAGAGTGAATGGCAGAACTG GAACTGGAGATCAGAAGGGGACATGATGGTAAACGGTGCATTTTTCACAGCAACGGGTGCTGGAGCTTCTTCTAGCTACG CCAGAGCTTCAAGCTTAAGTGCAAGACCATCTTCCCTTGTTGCTTCCATAACAAGTGGTTCTGGAGCACTTGACTGCAAG AAAGGTTCTCCTTGCTGA
CDS sequence (LotjaGi1g1v0230700.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGATCAAGTTAAAAGAAGAGCTGATCATGAACTCTTTCAAAACCATTGACGGCAGGGGTGCGAGCGTGCACATTGC TGGCGGTCCTTGCATAACAATACAGTACGTGACCAATGTGATCATTCATGGGATACACATCCATGATTGCAAGCAGGGTG GGAATGCTATGGTGCGGGACTCCCCACGACACTATGGGTGGAGGACCATATCAGACGGTGATGGCGTGTCGATCTTTGGA GGGAGCCAGGTGTGGGTGGACCATTGCTCGTTGTCGAATTGCAAGGATGGATTGATCGATGCGATTCATGGGTCCACCGC AATTACCATATCCAACAATTACATGACTCACCATGATAAAGTCATGTTGTTGGGTCACAGCGATTCTTACACAGATGACA AGAACATGCAAGTCACAATCGCTTTCAACCACTTTGGTGAAGGTCTTGTTCAAAGAATGCCAAGGTGTAGGCTTGGATAC TTCCATGTGGTGAACAATGACTACACTCACTGGGAAATGTATGCCATTGGAGGAAGTGCTAACCCCACCATCAACAGCCA AGGCAATAGATTTGTTGCACCCGATGACAGATTTAGCAAAGAGGTAACAAAGCATGAAGATGCCCCAGAGAGTGAATGGC AGAACTGGAACTGGAGATCAGAAGGGGACATGATGGTAAACGGTGCATTTTTCACAGCAACGGGTGCTGGAGCTTCTTCT AGCTACGCCAGAGCTTCAAGCTTAAGTGCAAGACCATCTTCCCTTGTTGCTTCCATAACAAGTGGTTCTGGAGCACTTGA CTGCAAGAAAGGTTCTCCTTGCTGA
Protein sequence (LotjaGi1g1v0230700.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGIHIHDCKQGGNAMVRDSPRHYGWRTISDGDGVSIFG GSQVWVDHCSLSNCKDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTDDKNMQVTIAFNHFGEGLVQRMPRCRLGY FHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKHEDAPESEWQNWNWRSEGDMMVNGAFFTATGAGASS SYARASSLSARPSSLVASITSGSGALDCKKGSPC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 274 | 274 | 2.8E-180 | – | |
| PANTHER | 1 | 274 | 274 | 2.8E-180 | – | |
| SMART | 1 | 197 | 197 | 2.4E-100 | ||
| SUPERFAMILY | 1 | 274 | 274 | 2.32E-79 | ||
| Gene3D | 1 | 267 | 267 | 5.5E-90 | ||
| Pfam | 7 | 191 | 185 | 8.0E-22 | ||
| PRINTS | 8 | 24 | 17 | 6.5E-60 | ||
| PRINTS | 72 | 93 | 22 | 6.5E-60 | ||
| PRINTS | 152 | 171 | 20 | 6.5E-60 | ||
| PRINTS | 174 | 193 | 20 | 6.5E-60 | ||
| PRINTS | 216 | 240 | 25 | 6.5E-60 | ||
| PRINTS | 245 | 268 | 24 | 6.5E-60 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0230700.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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