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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0232200 |
| Transcript ID | LotjaGi1g1v0232200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (CC-NBS-LRR class) family protein; TAIR: AT4G26090.1 NB-ARC domain-containing disease resistance protein; Swiss-Prot: sp|Q42484|RPS2_ARATH Disease resistance protein RPS2; TrEMBL-Plants: tr|A0A0R0JXM6|A0A0R0JXM6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0232200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:54595756..54598788) extracted from Lotus japonicus Gifu genome v1.2.
GAGCTGAGAAGGATATTGGTGTATTCTCAAGTCAACTGCTGGTGGTGTGGTGCTTGTATCAAGATTCAAGAGGTTAAGGG AGCAGAACATCAATCAAGCCCATAGGTATGAGTGCATCTCAAAACATTATTGTGTTACATGTCCTTTGACCAAATTGATT CATATCAGCATCTCTGTTTTTCGTAAATATTTCTTATGCCAACTGTTATGTATTGTTCAACTCAACTAATTTCTTTGTTG CTTTTGTCTGTTTTTGCTATTCAAGTTCAGTTCTAATTCGGACTTGTGGTTCCTTGCTTTTCTTCACGTATTGTATGTAT TGAGTCCACATTGATTTGAGTCTCTTATTTTCCTTTATCACTGAGGAAGTGATTAAAATTGTTTGATCTTTTATCTCTAA TGACTCTTACATGAAAATAAGTGGCATACTCAGCAAGTTCCTGACAGTGACACATAAAAGAATAAAAATCTGGTGCTTGC CAATTAACACAGAATAAAATCTTTTTCTTAGTTTAATTTGTTCCATTTTATACAGATCAGGGAACATAACCAAGAAGCCC GAGACAAATATGGATGCTATTGCTAGCGTAGCTTCAAACGTGGCTGTACCTTTACTACGAAACATAACCTATGTATTGAT GTACAACAGTTACCTCACAGACCTTGAGGTCCAGATTCAGAAGCTGAAACGGGAGGAGAAAGAAGTCAGACACACTGTTG AAGCAGCCAAAAGGAATGGTGAAGAGATAGAAGACACTGTAGGCGACTGGTTTAATAGAGTGCATGCAGCTGTAGAGGAA GCACAAGCATTCAACCTGTAGCAATGAAAGTGTCCAAAAGCTGTGCTGGTTTGCCACTTTTGTTAGTCACAATGGTGGAC GCGTTAAAGAACAAGGATTTTTATGCTTGGAAGGATGCGCTAGAGCAGATAGAAAATTTTGACCTGGATGGATGCTTTTA TTCTCAAGTGCAATCTTCTATTGAGATGAGTTATAATTATTTAGAAAGCCAAGAACTCAAAACGTTCTTCCTCCTTTTGG GTTCAATGGGAAATGGTTGTAGCACCAAAGATTTGTTGGTGTTTGGTTGGTGCTTGGGTTTGCATAAACATGTTGATACA CTGGCAGATGGGAGAAACAGACTTTACAAATTGATAGACAACCTGAGAGCTGCTTGTTTGTTATTTGAAGGGAAAAGAGA TTCGCTTGTGATGCTCGATATTGTTCGCAATGTCGCTGCATCCATTTCATCCACGGTCAAACCTTTCTTCACTGTACAGA GAAACACTGAACTGAAAGAATGGCCAAGAATGGATCTCTTTAAAACTTGTCATCATATTTTCCTGGACTGGTGTTTTGTC CATGAACTTCCTGAGATGTTAGAATGTCCCAAGTTGAAGATACTCCAACTCAACTGTCAAGGCAACAATTTGAAAGTTCC TGACAATTTCTTTGTTCTGATGAAAGAATTGAAGGTCCTAAGTTTAGGAGGAGTGAATTGTACTCCATCCCTTCCTCCAT CTCTTGGTCTTTTGACAAACCTCCAATCGTTGAGTCTGTTCAAATGCATGTTGGAAGACATTAGTATTGTTGGACAAATC CCAACTTTAGAGATTCTCAACCTTGAAAATTCTGAGCTCAAAGAGCTCCCTGCAGAAATAGGAGAAATGACTCATCTACG GTTGCTATATTTGACTGATTGCTCCACACTAGGAGAAATACCTTGCAACCTATTATCTAGTTTGACTAGCTTGGAAGAGC TCTACATGGGGAACTGTAATATTCAATGGGAGGCCGAGGGAAATGAAAATGAAATGACTAATTCAAGATTGAGTGAGTTA AGACATTTGCATGGACTAAAAACTTTGAATATGCAGATAAAATATACTTCAGTTTTTCCTAGAGACTTGCTAGCCTTTGG AAAACTTGAAAGCTACAAGATTATCATCGGGGATGGATGGAAATGGTCCGCTGTGGAGTCTGAGAATTACCAAACTTCAA GAGTTCTTAAGCTAAATTTGAGCATGGATCCAAGCATTCTTATGGATTATGGGATGAAGTTGCTGATGATTCACGCTGAA GATTTGTATTTAGCTGAACTAAAGGGTGTCAAGGAAATACTTTATGAATTGAATGATGAAGGATTTTCACAATTGAAGCA TCTTAATATCCAAAACTGTGATGAAATGCAGAGCATTATTGGCTCAACTGAGTGGGCTCATCATGATCATGCCTTCCCCA AATTGGAGTCTTTGATCATTCACAGTCTGATTAACATGGAGAGAATATGCACTGGCCCACTTCCAGCACAAGCTTTTACC AAACTGCAACTTATCAAAGTAAAGGGTTGTGATAGGATGGAGTCTGTTTTATTGCATTCCATGGTTAAACACCTTTCTGA ACTTCTGGAAATTGAGATTTCAGAATGTAAAGATATGACCTATATCATAGCCAAGGAAGAACAAGAGGATGCTGGACAAA CTAGCAAGATCAGGCTCCCGAAAATGCGTTCTCTAACGCTTGAATCCTTACCTTCACTTGTTAGTCTTTCACCTGAGTCG CACATTATTGGTACTGAAAACACCAATGATTTCTCCAGTGCACCTGAAAAAAGAAAAAAGATTCTAGCCGATATGGATTC CTTCATCTTGCATTAACCATTAATTTTGCAACGAAGAACACAGTGTCTAATAGGTATAGGCTTAAACAGAGAAGAAAAAT GACTAATTGTAACTAACTTTTAGTTAGTTAGGTGTTAGCTGTAAATAGAGGAATCAAAGCCTCAGTTAGGAGTTTTTGAT TTAGTTGGAATTGGTTGGGCTGGTTTATTAGGAACTAGAGTTTACTTTCGAAATAAAAGATTTCTATCTCTACTTTCAAG AACACATAAACATGGCAGTCAGGACTAGGGACCTTGATACTGTTATCAAAAGAGAAAAGAAAAATAATATTTTTAAAGAG AGAGAGACAGAGTAATGCCTCACCAAAATACTGTTATCCATATAAACCCTCACATCCTGTGGTCAGGAATCAG
CDS sequence (LotjaGi1g1v0232200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGTGTCCAAAAGCTGTGCTGGTTTGCCACTTTTGTTAGTCACAATGGTGGACGCGTTAAAGAACAAGGATTTTTA TGCTTGGAAGGATGCGCTAGAGCAGATAGAAAATTTTGACCTGGATGGATGCTTTTATTCTCAAGTGCAATCTTCTATTG AGATGAGTTATAATTATTTAGAAAGCCAAGAACTCAAAACGTTCTTCCTCCTTTTGGGTTCAATGGGAAATGGTTGTAGC ACCAAAGATTTGTTGGTGTTTGGTTGGTGCTTGGGTTTGCATAAACATGTTGATACACTGGCAGATGGGAGAAACAGACT TTACAAATTGATAGACAACCTGAGAGCTGCTTGTTTGTTATTTGAAGGGAAAAGAGATTCGCTTGTGATGCTCGATATTG TTCGCAATGTCGCTGCATCCATTTCATCCACGGTCAAACCTTTCTTCACTGTACAGAGAAACACTGAACTGAAAGAATGG CCAAGAATGGATCTCTTTAAAACTTGTCATCATATTTTCCTGGACTGGTGTTTTGTCCATGAACTTCCTGAGATGTTAGA ATGTCCCAAGTTGAAGATACTCCAACTCAACTGTCAAGGCAACAATTTGAAAGTTCCTGACAATTTCTTTGTTCTGATGA AAGAATTGAAGGTCCTAAGTTTAGGAGGAGTGAATTGTACTCCATCCCTTCCTCCATCTCTTGGTCTTTTGACAAACCTC CAATCGTTGAGTCTGTTCAAATGCATGTTGGAAGACATTAGTATTGTTGGACAAATCCCAACTTTAGAGATTCTCAACCT TGAAAATTCTGAGCTCAAAGAGCTCCCTGCAGAAATAGGAGAAATGACTCATCTACGGTTGCTATATTTGACTGATTGCT CCACACTAGGAGAAATACCTTGCAACCTATTATCTAGTTTGACTAGCTTGGAAGAGCTCTACATGGGGAACTGTAATATT CAATGGGAGGCCGAGGGAAATGAAAATGAAATGACTAATTCAAGATTGAGTGAGTTAAGACATTTGCATGGACTAAAAAC TTTGAATATGCAGATAAAATATACTTCAGTTTTTCCTAGAGACTTGCTAGCCTTTGGAAAACTTGAAAGCTACAAGATTA TCATCGGGGATGGATGGAAATGGTCCGCTGTGGAGTCTGAGAATTACCAAACTTCAAGAGTTCTTAAGCTAAATTTGAGC ATGGATCCAAGCATTCTTATGGATTATGGGATGAAGTTGCTGATGATTCACGCTGAAGATTTGTATTTAGCTGAACTAAA GGGTGTCAAGGAAATACTTTATGAATTGAATGATGAAGGATTTTCACAATTGAAGCATCTTAATATCCAAAACTGTGATG AAATGCAGAGCATTATTGGCTCAACTGAGTGGGCTCATCATGATCATGCCTTCCCCAAATTGGAGTCTTTGATCATTCAC AGTCTGATTAACATGGAGAGAATATGCACTGGCCCACTTCCAGCACAAGCTTTTACCAAACTGCAACTTATCAAAGTAAA GGGTTGTGATAGGATGGAGTCTGTTTTATTGCATTCCATGGTTAAACACCTTTCTGAACTTCTGGAAATTGAGATTTCAG AATGTAAAGATATGACCTATATCATAGCCAAGGAAGAACAAGAGGATGCTGGACAAACTAGCAAGATCAGGCTCCCGAAA ATGCGTTCTCTAACGCTTGAATCCTTACCTTCACTTGTTAGTCTTTCACCTGAGTCGCACATTATTGGTACTGAAAACAC CAATGATTTCTCCAGTGCACCTGAAAAAAGAAAAAAGATTCTAGCCGATATGGATTCCTTCATCTTGCATTAA
Protein sequence (LotjaGi1g1v0232200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKVSKSCAGLPLLLVTMVDALKNKDFYAWKDALEQIENFDLDGCFYSQVQSSIEMSYNYLESQELKTFFLLLGSMGNGCS TKDLLVFGWCLGLHKHVDTLADGRNRLYKLIDNLRAACLLFEGKRDSLVMLDIVRNVAASISSTVKPFFTVQRNTELKEW PRMDLFKTCHHIFLDWCFVHELPEMLECPKLKILQLNCQGNNLKVPDNFFVLMKELKVLSLGGVNCTPSLPPSLGLLTNL QSLSLFKCMLEDISIVGQIPTLEILNLENSELKELPAEIGEMTHLRLLYLTDCSTLGEIPCNLLSSLTSLEELYMGNCNI QWEAEGNENEMTNSRLSELRHLHGLKTLNMQIKYTSVFPRDLLAFGKLESYKIIIGDGWKWSAVESENYQTSRVLKLNLS MDPSILMDYGMKLLMIHAEDLYLAELKGVKEILYELNDEGFSQLKHLNIQNCDEMQSIIGSTEWAHHDHAFPKLESLIIH SLINMERICTGPLPAQAFTKLQLIKVKGCDRMESVLLHSMVKHLSELLEIEISECKDMTYIIAKEEQEDAGQTSKIRLPK MRSLTLESLPSLVSLSPESHIIGTENTNDFSSAPEKRKKILADMDSFILH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 20 | 20 | - | – | |
| PANTHER | 1 | 581 | 581 | 9.6E-144 | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| PANTHER | 1 | 581 | 581 | 9.6E-144 | – | |
| SUPERFAMILY | 2 | 71 | 70 | 5.31E-5 | ||
| Phobius | 7 | 15 | 9 | - | – | |
| Phobius | 16 | 20 | 5 | - | – | |
| Phobius | 21 | 610 | 590 | - | – | |
| Gene3D | 129 | 401 | 273 | 1.6E-29 | ||
| SUPERFAMILY | 129 | 536 | 408 | 4.42E-29 | – | |
| Gene3D | 417 | 594 | 178 | 1.8E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0232200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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