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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0235300 |
| Transcript ID | LotjaGi1g1v0235300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sentrin-specific protease; TAIR: AT3G48480.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q0WKV8|ULP2A_ARATH Probable ubiquitin-like-specific protease 2A; TrEMBL-Plants: tr|I3SBV8|I3SBV8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0235300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:55558865..55562446) extracted from Lotus japonicus Gifu genome v1.2.
ATATTTACTCTCTCCTTGTCTCTATCCTCCAGAACCAAAAAGGCTAGAACCAATACGGAACCGCGCCTCAAGAACATACA GAACTCAATCGAGTAACACACTGTGCTTCATCTTCATGCCCCGCATTTTAGTTCGATCATAATATCATTCAATGAGATTA CGCTCAGCATCATCATTGAAAACTTCAAAGGTCGCTAACAATGAAGGTTAGTTCTTCAACACTTGAATTTTGCTTTGCTG GTTAATCGAGTTGTGCCCTCTCTACCCCAAATTTCGATTTAGAAGCTATATGCTGAATTTGGATGAATGCATAACATCAC TATTGTTCTAATTTGTGAAATTGTACATTTGTTGGTTATGTTATGTGTGGCTTAATTGTTGCAGGACATGAATATGAAAT TTCTAGGGTTTCATGCTTTGTTTGCATTTTCTTACATTTTGGCTTTATTTTCTTCCAGTTTTCTTTTTCCTTTCTTTTTG GCTTGGTGGTGGTGGGGTAGTGGGTGTGGTTATTGGCTTAGGGTGTGCCGGAGCAGATAGGGGAAGGCTTTAGGGGAATG GGAAGGGGAGTATTAGGGTGCATTTGGGTAAACAGCTTAATTAAGCCCTTATGACATTAAGGGATTTTGTCTCAAGAGCT TATTCATAAGCTAATTTGAAAAACTTTATTCAAATTAGCTGAAAATAGGTTTTGGATAAGCATCTTATTCATAAGGTGAT ACAAACAACTAATGAAAATAAGCTCAAAACAACTTATTGGTAGGCCATAAACTATTTAATAAGCTCTTCCAAGTTCCAAA TACTTGCATAAGTGCTCATGCTATAAGATAAGCTTAAATAAGCCCTTCCAAACGGGGTCTAAGTCTTTCCTTTGTGTGTA CAACAACAAAAGCCTTTTCCCACTAAGTGAGGTAGGCTATATGGATCACACTATGCCATTGAACTCGATCAAAAACTAAA TTATGAGGGATATTATTGATAACGAGATAATCTTTAACAATATCCTCCCCTTGTTTGTAAGTTCTAGAATTTCTCATAAA CCCCCAATTTGGGCGAACTAAAAAATATAACTTAAAGAAGGTTTTGGAGGTTCTTGGAATGTTTTCATTAATACCCGAAG TCCTCCCCCCCCCCCCCCCCTTAAAATCTCTCAAACAATGGGAGGGCTTCTCATAAGCCTCTCGCTTCCCTTAAATCCCC TATAAAACTCAACTCACAATCAAACTCTTAACCTCTTTTGCATGGATAATGGTTTTTCACAACTGTAGTATGGTGTTGAG ATATATATTGGGAACCAAAAGTAGAAGTTGATTCTTTCTATCATTGTTTTTGTCTCTTGTCAGTGATTTATGTGAAGGGA GAAACAGAAACTAACTCAGAACATGGAACAAAAATTGTTTATACTCGTCGAAGAAAGAAGGGTAAGCCTGTAAGAGATGT GATAGGAAGTGTAATTTCATCATTGCCATCATACCTGAGCGATATTCCCCGGCGACCGCGAACAAAGAAGAAAAAATTCA AGGCTGAAGAAGCTCTCCCTAGACCCAAGCTAGACAGTGGAGTCTTTGATAATAACTTAGTGTAAGTTACAGCCTAATAT GATACTTATGGTAGAAAGTGAGCAACATCAAAATTACGTCCTTGTTTCTGAAGATAAATTTTCTGGCAGGAAAATATGGA ACAGTTTCTCAGAAGATAAGAGGAAGCCCTTTGCATACTTTGACAGCTTATGGTTTAGCCTTTACAGGGCTGCTTCATCC AAAGACAAGGTGCTGACTTGGATTAAAAAAGAACATATTTTCTCAAAGGCATATGTTTTTGTTCCTATAGTCTGCTGGTA AATACATTTAATTCCTTTATTGCTGAAATGCCTTTTTTATTATTCAAATGTTAATCCATGGAATTCTTCCTTGAAATCCC AATATTGCAGGGGTCACTGGAGTCTTTTGATCTTCTGCCATTTTGGTGAGAGCTTGCAGTCAACTACTAGATCGCGGTGT ATGTTGTTGCTGGATTCTCTTGAAATGGTGAATCCAAGACGCCTTGAACCAGACATAAGAAGGTGTGTCTTTGTTGAACA ATATCTGTTTGTTTTGATAAGATATTCTTGTCCAGTTTGAGTATTTAACATTTGCAAGCTTTTGTCTTCTTTGTCAGGTT TGTTGTAGACATTTATAAAGCATGGGACAGGCCAGAGACTAAGAATCTCATATATCAGATTCCTTTATTGGTTCCCAAGG TTAATTGACCCCTTTTTATGATTTTTCATCCCACCATAACCAGATAACCAACTGTTGAAATACAAATTATTGTAGGTGCC TCAACAAAGAGACGGTAATGAATGTGGGAACTTCGTCCTTTATTTCATTAACTTGTTTTTGAGATGTGCTCCTGAGAATT TTAGCATGGGCGGGTACCCTTACTTCGTAAGTTATCTCTTTTCCTGTTCTTGAAAGTTATTATCCGTACATACATTTTAA TTCAGTTTTGTTTGACATTGACATGCTGCAGATGAAAAAAGATTGGTTTACCTTTGAAGACTTTGACAGGTTTTGTGAGA GACTTTATTCATTGAATTAAATGCCCCCAAATTTGAGTACACTGGGATTAACACACTTCATTACTGATTATTATATACAT AAATAGTAAGGGGGTTTGTTCATATAGGAGGCAAGGATATCCAGTTTTTTTGCGAAGTAGAGATAGTACACTACTCCTCT TCTATGCATATAGTTCAACTTCATGGAATGCCAATGTGTTGGAATTGAAATTTACTGTACCATGTTGGCTTCTGTAGATG CAGTTGTTAAAGTTATGTCATGTTCAGATTGATAGTAGCAGTGTTTATATTAGCTTATATAACACAATTGGTATAGTTAT TTAGTCTAAGAGTTTCAACTTGGTGAATGTGATCTGTTTCTGTGTACATTCGAGATAGAGATTTGAACATATTTGACAAT GAAGTAGAAATTGAAATCTGATTTTCAACTTGGTGAATATGATCCGTTTCTGTGTATAAGACCGAATGGAATGTGATGAT GAAAAGCTTGCATGGGATATAGAATACATTACAATGATGTTGAAAATGGAAATATGAAGAAAATGATATGGGGCAAGAAC GTCCAATATGTCAACTTAATTGTATCATCTTACTTCAAGAAAAAGAAAAATAATTCAATGTCCACCATCACCATGTATCA AACTTCAAGTCCGCTCCACACCATGTATCTTCAACTGTCATTCCACCTCATTTGATTTTATCTAACAAAGCCCCCGCAGC ACCAATCCACTAGATAATCACCCATCCATTTCATTGCTTAAGTTTCTCTCTACGATGGCATCACCGTTGCCAAATCAACC TCCTCGTCAAGAAACTCTCCCCAAGTTCAAATCCTTTGGTTCCGATGATCACAATCTCAGAACAATATTTAAAGTTGTAC TTCCAGAATTGAGACCGAATTTCTTCGTCTTCAGTGATGGTGCGCGACCTTGGAAGGCTTCTCTGGCACGACGGAGCTGC GTTGACACAACCAGGGAGTGTACTTGCGATCATTGCCGGATTCAGAAAACAAAAGTTGTGGG
CDS sequence (LotjaGi1g1v0235300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGATTACGCTCAGCATCATCATTGAAAACTTCAAAGGTCGCTAACAATGAAGTGATTTATGTGAAGGGAGAAACAGA AACTAACTCAGAACATGGAACAAAAATTGTTTATACTCGTCGAAGAAAGAAGGGTAAGCCTGTAAGAGATGTGATAGGAA GTGTAATTTCATCATTGCCATCATACCTGAGCGATATTCCCCGGCGACCGCGAACAAAGAAGAAAAAATTCAAGGCTGAA GAAGCTCTCCCTAGACCCAAGCTAGACAGTGGAGTCTTTGATAATAACTTAGTGAAAATATGGAACAGTTTCTCAGAAGA TAAGAGGAAGCCCTTTGCATACTTTGACAGCTTATGGTTTAGCCTTTACAGGGCTGCTTCATCCAAAGACAAGGTGCTGA CTTGGATTAAAAAAGAACATATTTTCTCAAAGGCATATGTTTTTGTTCCTATAGTCTGCTGGGGTCACTGGAGTCTTTTG ATCTTCTGCCATTTTGGTGAGAGCTTGCAGTCAACTACTAGATCGCGGTGTATGTTGTTGCTGGATTCTCTTGAAATGGT GAATCCAAGACGCCTTGAACCAGACATAAGAAGGTTTGTTGTAGACATTTATAAAGCATGGGACAGGCCAGAGACTAAGA ATCTCATATATCAGATTCCTTTATTGGTTCCCAAGGTGCCTCAACAAAGAGACGGTAATGAATGTGGGAACTTCGTCCTT TATTTCATTAACTTGTTTTTGAGATGTGCTCCTGAGAATTTTAGCATGGGCGGGTACCCTTACTTCATGAAAAAAGATTG GTTTACCTTTGAAGACTTTGACAGGTTTTGTGAGAGACTTTATTCATTGAATTAA
Protein sequence (LotjaGi1g1v0235300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRLRSASSLKTSKVANNEVIYVKGETETNSEHGTKIVYTRRRKKGKPVRDVIGSVISSLPSYLSDIPRRPRTKKKKFKAE EALPRPKLDSGVFDNNLVKIWNSFSEDKRKPFAYFDSLWFSLYRAASSKDKVLTWIKKEHIFSKAYVFVPIVCWGHWSLL IFCHFGESLQSTTRSRCMLLLDSLEMVNPRRLEPDIRRFVVDIYKAWDRPETKNLIYQIPLLVPKVPQQRDGNECGNFVL YFINLFLRCAPENFSMGGYPYFMKKDWFTFEDFDRFCERLYSLN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 144 | 144 | - | – | |
| PANTHER | 32 | 283 | 252 | 3.1E-104 | – | |
| PANTHER | 32 | 283 | 252 | 3.1E-104 | – | |
| ProSiteProfiles | 73 | 246 | 174 | 13.83 | ||
| Gene3D | 84 | 270 | 187 | 1.1E-29 | – | |
| SUPERFAMILY | 87 | 262 | 176 | 2.16E-27 | ||
| Pfam | 130 | 267 | 138 | 7.6E-11 | ||
| Phobius | 145 | 167 | 23 | - | – | |
| Phobius | 168 | 284 | 117 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Molecular function | Cysteine-type peptidase activity | Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. |
Expression pattern of LotjaGi1g1v0235300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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