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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0237700 |
| Transcript ID | LotjaGi1g1v0237700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Proteasome subunit beta type; TAIR: AT3G26340.1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein; Swiss-Prot: sp|O24361|PSB5_SPIOL Proteasome subunit beta type-5; TrEMBL-Plants: tr|I3T0L3|I3T0L3_LOTJA Proteasome subunit beta type; Found in the gene: LotjaGi1g1v0237700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:56586340..56589035) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGCTCGATACCACTGGTCTCGAATCGTTTCCTAAACTGGTTGCACCTGGAAACGACGTCGTTGGGGAGTTCACCGC ACCCCCATCATTCGAGCTTCCCAATTCCAATGATGTGAGTAATTCTTTGTTTGCCTCAATTTCACGATTCTGAAAGTGTT CATGTGCAAAAATTAGGGCAAAAAATTGGGGTTGAAATTTGTTGCTGAAATTGTGGGGGAATGATGAAATATTAGGTATA GTTTATAGTTTGTAGAGAAAGGTTGAAACTTGATGGTTTTATCTGAAGGGTTTTGTGTATTTGTTGTTGTTAGTTTGATG GCTTCGTTAAAGAAGCTATTCAGATGGTGAAGCCCGCGAAGGGTACGACGACTCTTGCTTTTATATTTAAGGATGGTGTC ATGGTAGCTGCTGATTCTCGTGCTAGCATGGGAGGGTATATATGTGAGTGTTTATCAATTCTAATTTTTGTGTTTTTTTT TGTACCGTTTTGCTCCTTTGGCGAAAACTGTGGTTTTATGTTAGTTAGTGGTTTATTTTTTATATTATGGTGCCTTTGTT GTTGACTATTGAGTTATGGGTGTCTCCAGCTTCGCAGTCTGTTAAGAAAATTATTGAAATCAATCCGTATATGCTTGGGA CAATGGCTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGAAATCTTGGGATCAAGGTGATATAAACATTCTTCTATTTT GCATGATTACTTTTGTCTGTCCTGTTATGTTGTAGCTCAGACAAGTGCCGGCTGCACACTAGTTTCTCAGAGCTTGTCAT TCATTGGTTATTTCATTGCGCTTATTAGTATTATATAGTTGCAAGTCTAAGAAATTTGCCTCCTGGAGCACATTTATGTC ATGCTCATTGCCTGGAAATTATTTGAATTATTTGTCCTTTGCCTGTGGCATAGCATGTGTTCAGGAAGCAAGTAAGGAGT GAAAGTAAGCGGATGGAATGGTATGGGATAGAAAGTAGTTATCTGCTCTTTTGTTGGAATGCCGAGTAAATGGTAGGAAT AAAATTGATAAGAAAAATAATTCTATATTGCTTGGGAACAATAAAAAGGGATAGGAATTAGGAAGGAAATTCTGATGATT AAAATACAGATGTAGCCTTTAATTTTAAATAAATTTGTTTAGAGATATCCTGAACTCTATTTTTCTCGGTAATTTTTCCC ACGTGTCAAATGTAGAAAGATTAATTTTGATAGTGCAGCAATGCAAGAATAAAACACTTCTATTCGGATTGCTTTCATTT TGGAGATTAATTCCTAAGAAGTAAGAACAAAGTTGAGGGCTGGGTGATGCAGAGAGTTAGAGAGACACAGGTTGGATGGC TTAGCCTTAGATACATGATCTTTTGGTCTTGTCAATCTTGCTTTATATTTCTCTTTTTGGTACATATTTAATTTTATAGA TTTTCTTGATCAATCGGCTGACTTAGTAGACTTTTCAATGTGTCTTGTTCTATATGGTTTGTAGATCCTTGAATTTTAAA ATTATGCGGGTGGTAATAGAAGAATTAAACAACTTCATGTGAATTGATAGAATTTTCTATCTTTTGTTGTTTCAAGATAT GATTTCTGTCCTTTTATACTTTCTAGGTTACAAATGGTTTCTCTGATCTGTTTCATGTTATTTGTAGTGTCGGCTACATG AGTTGGCAAATAAAAGGAGAATTTCAGTAACAGGGGCCTCTAAGATGCTTGCAAACATTTTATACTCTTATCGTGGAATG GGGTTATCTGTTGGTACCATGATCGCTGGATGGGACGAGACGGTAATTCATATGTCAATTTAGTTGATGGATTTTGCTCA GATGTTCCTATTGTGACTTACTTCGGTTAATCTCTTTTTAGGGTCCTGGTCTATATTACGTTGATAGTGAAGGAGGAAGA CTTAAAGGCACTAGATTCTCTGTTGGATCTGGTTCACCATATGCTTATGGTGTATTAGACAGCGGGTTAGCTAAACATTC TATTTAACTATCCCTTAGATCTCTTCTATCAAATTTTGTCAACAATTACCTTGTTATTTTAGGTACAAATATGACATGTC AGTTGAGGAAGCTGCTGAGCTGGCTCGACGAGCAATTTATCATGCTACATTTCGTGATGGAGCTAGTGGTGGAGTTGCTA GCGGTATTCTATCTTTTGTCCCTATATTGACCCACCTGCATCTACATATATCTGTTACATTTTGTCATTGACCTCATTTC CAGTAATAAACTAGTATGTACACATAGTCATGCATGGCTTAATTGACATGTCTCATGAGTTAAAGTTGCATGGGTGTTGT AGCCAAATAGTTCATGCTCAACCCCAACATGATGTGTATTTTACTATGTCCACTTGTATAAATAATTGAAAATAGTCTAT AGTTTCTAACTATGTAGGAAGAAATACTATAGCTCTGTTGTCGTTATCACTGACTAGATGAGCATTTTTCAGCAGCTATT CATTATATGCATATTTCATAGCTAATTAGCTATAAATTTGTATGACTCAAAATTAATGTCTCGCTAACTTGGAGATTAAT TTATATGATTTCAGTTTACCACGTGGGACCAAACGGATGGAAGAAATTGTCTGGTGATGATGTTGGGGAGCTTCATTACC ATTACAACCCAGTTGTTCCAAGCACCGTGGAACAAGAAATGGTTGAGGCAGCTTGA
CDS sequence (LotjaGi1g1v0237700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCTCGATACCACTGGTCTCGAATCGTTTCCTAAACTGGTTGCACCTGGAAACGACGTCGTTGGGGAGTTCACCGC ACCCCCATCATTCGAGCTTCCCAATTCCAATGATTTTGATGGCTTCGTTAAAGAAGCTATTCAGATGGTGAAGCCCGCGA AGGGTACGACGACTCTTGCTTTTATATTTAAGGATGGTGTCATGGTAGCTGCTGATTCTCGTGCTAGCATGGGAGGGTAT ATATCTTCGCAGTCTGTTAAGAAAATTATTGAAATCAATCCGTATATGCTTGGGACAATGGCTGGAGGTGCTGCTGATTG TCAGTTTTGGCACAGAAATCTTGGGATCAAGTGTCGGCTACATGAGTTGGCAAATAAAAGGAGAATTTCAGTAACAGGGG CCTCTAAGATGCTTGCAAACATTTTATACTCTTATCGTGGAATGGGGTTATCTGTTGGTACCATGATCGCTGGATGGGAC GAGACGGGTCCTGGTCTATATTACGTTGATAGTGAAGGAGGAAGACTTAAAGGCACTAGATTCTCTGTTGGATCTGGTTC ACCATATGCTTATGGTGTATTAGACAGCGGGTACAAATATGACATGTCAGTTGAGGAAGCTGCTGAGCTGGCTCGACGAG CAATTTATCATGCTACATTTCGTGATGGAGCTAGTGGTGGAGTTGCTAGCGTTTACCACGTGGGACCAAACGGATGGAAG AAATTGTCTGGTGATGATGTTGGGGAGCTTCATTACCATTACAACCCAGTTGTTCCAAGCACCGTGGAACAAGAAATGGT TGAGGCAGCTTGA
Protein sequence (LotjaGi1g1v0237700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLDTTGLESFPKLVAPGNDVVGEFTAPPSFELPNSNDFDGFVKEAIQMVKPAKGTTTLAFIFKDGVMVAADSRASMGGY ISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKMLANILYSYRGMGLSVGTMIAGWD ETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKYDMSVEEAAELARRAIYHATFRDGASGGVASVYHVGPNGWK KLSGDDVGELHYHYNPVVPSTVEQEMVEAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 35 | 261 | 227 | 2.5E-144 | – | |
| PANTHER | 35 | 261 | 227 | 2.5E-144 | – | |
| SUPERFAMILY | 43 | 254 | 212 | 3.05E-71 | ||
| Pfam | 54 | 234 | 181 | 6.8E-50 | ||
| ProSiteProfiles | 55 | 234 | 180 | 57.744 | ||
| Gene3D | 56 | 259 | 204 | 5.1E-86 | ||
| CDD | 56 | 243 | 188 | 8.48548E-135 | – | |
| ProSitePatterns | 59 | 106 | 48 | - | ||
| PRINTS | 63 | 78 | 16 | 3.2E-20 | ||
| PRINTS | 184 | 195 | 12 | 3.2E-20 | ||
| PRINTS | 195 | 206 | 12 | 3.2E-20 | ||
| PRINTS | 220 | 231 | 12 | 3.2E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain. | ||
| Molecular function | Threonine-type endopeptidase activity | Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile. | ||
| Cellular component | Proteasome core complex | A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex. | ||
| Biological process | Proteolysis involved in cellular protein catabolic process | The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells. |
Expression pattern of LotjaGi1g1v0237700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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