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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0240300 |
| Transcript ID | LotjaGi1g1v0240300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat-containing protein; TAIR: AT1G78230.1 Outer arm dynein light chain 1 protein; Swiss-Prot: sp|Q54Q39|PP1R7_DICDI Protein phosphatase 1 regulatory subunit pprA; TrEMBL-Plants: tr|I1JVD3|I1JVD3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0240300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:57295969..57302787) extracted from Lotus japonicus Gifu genome v1.2.
CAAATCGGAATTGTGAGAACAATTTTGACAACCCAAAAAAAACATATTGTAGTGTTGTGGTTGTGAAGAAGTGACCTCAC AGACATCAACACATAACCGAACACCCCGTGTATGTTGCGCGTTTGTCATTGTTTTTTCAAAACCTATTCTAACCGCACTC TTCATTTAATAATACCCACACACCACTTCCAAAAATAATACAACACCCTCAACCTCTCCAATTTTACTTGTTTGATTTAT CCACACTGATACAACAGAACACAATCATGCTCTTCTAAGAACTATCAGCACAAACAGATCTCAGGTCCTTAACTGGTTTG ACAATCTGGCGAAATTCCACTGCAAAAGGTTCGCCTTTTTACAATAAATGTTCTCTCTTTATGCGTGAAGCAGTATCTGT ATAAAATCTGCTTTACAATCACTGAACATTCTCATTTTGGCAGGGTTAGCTCCTGATTCCTTTTACCATTGAAATAATGA CTTAAATCTATGCTGTTTTTGTCAAAAATTTCAAAACCTCAGGAAAGATGATCGAATTGCATTCCCAGCCTACCCCTCAA CACAATAAATAATTTTTCAATTGTGTGTTGCACAAGCTCTAGATATCATGTCATTTAAATACAACTTTCCAAAGGAATTT ATTCAGGGGCTGCAATTTTAGTTTCTTTGATGGGAATTCAGGAATTTTCCCAAATCAAAGTTTGGTTGGCATATTTGTTT ACCTGAATGATTGGTTGGTCTTTCAATTGTGTAGGTCTGATTCGATTGACAAATATTCATGGAGCTTTGAAGTGCTGCAG CATCAGCAATTCAGCATATACAACTCTGGCCAACTCTACACCTTCAACACCAACTGTAGCAGGGGTTGGTCCTTGGTTTT CTGGATCCAGGTCTTGTTTGGACTGGGGCCTGTCACTTGTCCTGCGTCTTCCAACGGATTATGGCTAACTTCTGATACAC TCTTCTCCAATGTGATTTTCCATTCTCTCAAACAATCGCTAGGTTATTTGCTAAACTATCAGAGTAGAGATGTAGAGATG TGAGCGACAACAAAATTGTACAACTAGTACTAAGTTTGAAAGTGCAAAGAAGATTGGATAAAAAGGAAACAAGCTTTATC TTCTGCCATGGCCATGTGTAGGTGTGTGTCTGTTTTGACTGGATGGAAGGAGAAGAACAAGGTAAAAATATGTTCAGATA TTGTGTCTAGTATTGTTATTGCCTGGTTGGTGTGACTGTGGACTATATAATTTACCTGCTTGGGTCTTTTTTTGCTTGCT TCTTCAGGGCAGCAGCAAACGATATTCAAAAGGGGACCTTCACGCTCCACTTGTAAAAGAACAGCAGCCGAGGATGAGTC GTGATTTGAAGCCAGCCACCCTTGATGTTATAGTCTCCTGTGGTGTCCAGAAGAATTCGAAGTACAATGAGAAGATTATG AATCTTGAGAGTCCTGTGAAGACTGAAGCAGAGGATGCTTATGAGGGAGAAGATGAGCATGAAGATTCACCCTCCATCAA GAGGGAGCTTTCTGATTTTGATCTACAAGCCCATGAAGCTGTTGCAAGTGAAGGATGCGATCCAGCAGATAAAAAGGTAG AATACCCCAGTTTACATGAAAGCCAAGCCACCATTCAATTAGAAGACAAATACCATAAATACAGCAAAAAGAGTGTTGAT TTAATCCAAAGTGGACATGTCAGTGATCCGGGGATTGGCAAGGGTGACTTCTGGGCTTCTCCAAAGCTCACGCGATCTTG GTCTAACCTGGAAAGAAGGGATGTACTGAGGAAGACACCTCATCACTTTCCATCTCCAAAGTCACAGTCTTTTGAGGATT TACAGGAATTATCAGTAAATCAGATGGGTGTTCTAGAAAGCCCCAGGTCTGTGATGACAGGCTGCAGTGCTGATAGAGTG ATGTTGAAACGGCATTCATCAAGTCATGTTCTCCCTTCTGGAAGTAAAAGATTGTGGTGGAAGTTGTTCCTCTGGAACCA CAGAAATATACACAGACCTCAGTTAAGCAAATTACCACAATCACATCCTGCAAGTGCTGCTTTAAATAGACAATGCGGGT ACTCTTCGGACACCCTTGAACCTAAACATGGTAAGGCATGGAGACATGTGGAGTCACCCTCACCTGCGTCATCTTCTGGG GAGTACTTTGCCAAAAGTTTCAATGATAAAAATATCGACAACCAAAGGTGGAGCAGATTTCAGAAAGAAAGCACTAGTTT TTGGGCACAAAACCAATGGGTAGCTTTCTCAACAGAATCCTCCTCCTTTAACAGAGTGGATGAGTGGGTGAGAAATCTCG AAATCCAGCAGACACCTCAGGAGGAGGATTTTGATCATGACGATATTGGAAGCACTATCTTCCCACCTTCACCTGAAACT GGTAGATCAATGGCAAGAAGCACAACTCAGTTGGTTCGACATCCAGATGCAAATCTTTCAAAGGAAATTCTGATTGCCAA TAGCGTGGTACAGTCTCTGAATCCAGCCTCAACTGTAGCTCACATATCAGGCATTGGAATAAAAGCCATCCCTGCTATTT CACACTTCTCCAGTCTCCGCTCTGTCAATTTGTCAAGCAATTTCATAGGTATAAATTGTTTGAGAAAATTAAGTAAGCCT TAATATAACATCAAATAAGAGTAATAATACTATCTAACTCATTGATTCTGTTCATTAATTTGCAGTTCACATCACACCTG CATTTCTCCCAAAGGGTATTCATACACTTAATTTGTCAAGAAACAAAATCAGCACCGTTGAGGGCCTCAAAGAATTAACC CGGTTGCGGGTACTTGACCTAAGTTATAATCGTATCTCAAGGATAGGACAAGGTTAGTTCATATATTGCCTATAGCTCAA TAGATGAGTTTACTTCTTGAATTCCTTACCTTTCATTAAGTATTTACTACAATACAAATTTCCACCGTGTTTTATCAGGG TTATCAAATTGTACACAAATCAAGGAGCTATATCTTGCCGGAAACAAGATAAGTGATGTTGAGGGGCTGCACAGGTTACT GAAGCTAACAGTTCTGGACTTGAGCTTCAACAAGATCACAACAACAAAGGCATTGGGCCAGCTGGTGGCTAACTACAACA CACTTCAGGCTCTGAATCTGCTTGGAAATGCAATTCAAAGGAACATCAATGATGACCAGCTGCGCAAAGCAGTTTGCGGT CTTCTTCCAAAGCTTGTGTACCTGAACAAGCAATCTATCAACCCTCAAAGGGCACGTGAAATACTCACTGATAGTGTAGC CAAAGCTGCACTAGGGAACAGCAACCGAGGCTCTTCCAAAAGAGCACTCAAGAAAGGCAGCCAAGGAGGACCGAGTTCGT CCAGTGTGCATAGAGGCAGTGCTAGTGGTGTCCAGAAAAGTAAACGGTCAAGGAGCCAAACTAAACATCATTAGTTGTCA GTAAAAGGAGTATTTATGTTTCTCAGACTTGATATTTCGTCGAATATGTTTTTACCCTATTTTGCCCCAACCTGCTGGAA GGGGGAGACTTGGAATTATAAGGTTTGTTGTCCTGTGCCAAGGAGGTCTCATGTTCAAGGTATGTAATCAACCTCTTGTA AATCCAAGGTAAATCTACCTTACAATAAACCCACAATAAGTTTCTCTTCCCTAGATCTTGCCATGGTAGGGCCTTTCCAG CACCAGGTTTGCTGTTTTGTTTCAACCTATCACCCACCCAGTGGGACATGGCTGGTGTTGAAATACGACATGTGTTTCCT TCAACCCGTTATTGTGAGCGTTTGATATATTCCACAAAGGAGACTATGAAAACAGTCTATTGGTTTAAGAGTTGATGTAA TGCAATCTTCATTATTTACAATGTTGTGAAACTTGATATCATTATCTGGTTTCGCAAAATCTATACGCATCATGTACTCA AGTATGGTTGTATGAATTGCTGAAGTTGTCACCAATTCACCATCATTATCACTCAAACCTGTGCATAGCAAATACTATGA CAACTTAAGAATTCAAAGGAGGCACTATCAAGTTTAGCTCAGCTGTAAGCCTGTAACTTAAAATGAAACATGCCACAAGA AAACAGCAATACCTGTGGCGTCTATTTGAATTAACGTCACACCAAACCTGATGCTGAAGAAGACTGCTAAGAACATTTTA TTCAAGCTGCCCCACTGATCTATCCTACTAAACAAATCTTCTTGCTTCTAATGAAGTGGCCCGTTTTCCTTTCCTGTTGT TGCAAGAAATACCTTGGCAAGCGTATTCTGTGAAATTGATGCAGAGATCCTAGCACTGCACTCAGCAATTCAAGCCATGA AAAATTAATGAATTGTGGATGAACCGAAGTGGTTAAATAGTACTGAAAAACAATCTGGTCTGTTGCTTGCAAGACTCTAC CTCGCAGGTGAACCCAAAGCAATGGGGGCGCGATCTCACGCGAAGATTCGCGAAATCAGCCGCGCGCTGAAGTGGGATGT AATGGGGCTTGTTGTCCCAGCGTATGCCCGTGACTCATGCCAAGGTTCTCACACGACAGCACCGCTGCGATTGACAACCT AGATTAAAAGTAACTGCATGGTCAATAATATCCCAGAAAAAAAGGTTTTTGATTAAGCGCACTGGCAGCCGGTGATCCAT AAAGCCGATCTCACAGTACTTCTCTCACTCCCAATTTGGTGTAATACTCGAGAATGTGTCAAAAAGAGTGAAAGAGAGTC CGATCACACCTCTTACTCTAAAAAGTTGATCATTTCTCAAATACACGAATGAAACTTGAAAATGGAATTTAATTGCTGAT AAACGTAATACTTCTGTAGTAGCCAAATGTTTCAAAACCAAACACAATCAAGGAACAAAATGAACAACAAAAGACAAAGA GATAGCACCCCATAAGCTTTATTTTAACAGACCGGTTTATGACATCTAATTTTAAAAGTTGCACCTAATTCAACGATTTT TGAAAGTTAATCAAATAGCAAGCCCGGATGATGATGACTCTTAATAACAGTCTAATAAAAGTCATGGTCCCATTAAAACC AGAGGTCTGAAACCATGAATATATGTACATAACATAGTAGAAAACAAGACAGGTTCCTAGCATTTCATAGCAGATGAAAG TTGAAACTATGGAACCTGGTATACCTAGATAAAATGGTAAAGTTGACGAACCTAAAATCCTCGCCACCTATGCAATTCTT GGGAGTGAATGCTGCTCTATCACTAACAGTCTAACACGACATTAAACTCAAATTTCTCCCAGACCTCTTCATTCTTCTTG GAATCAAAATATGAAAAAGTTACACCTTTTACATCCCAGCCATTTCATTCCGGTTCCAGAGGCCAGAGCACCTTTAATTG AAGACCTCCATTAGTTTCCTTTTCCTTAATATAAAAATCCCTTTGGAAGTGTTTCTCACTCAGTAAGGACACATAAACCA TCAATGAACTCAAGTTAAATGTTGCTTTTCCATCCCAACATCAGAACCAGGTTCCATCTCCTGCATGAGAGCATACTTAT AAAGCTTCTCATTGAACACCACCTGGGGGTCCTTCTCAATCAAAACACCATTTTTATCATAAGCATCCTTCAAGAACACA GCCCAGTTCATCTCGGTTCCGGCCAAATAAAACGCTCGGGGCTGCTTAAGAAGCATGTGATAAGTATGCTTAGTCAAACT AAACTCCTCCTTAAACTCCACAAGGTGATGAATGGAGGCCCTCTTCTCCAAGGTCAAATTCAAGAACTCATGAACTACCC CAACCCTATACTTCTCCGCTTCCAAGGTCCACACATCCAATTTCGACCCATCCGAATAAGGAGACACCAAAGGAAGCGTG TTCAACAGGTTCAGCTTCCTCTCATCATCCAACTCCAAATCCAAATCCTTCCCATGCTTCACTGGAAACCTAAATTTCCT CTTAGCACCATCCTCATCAACCACAAACTCCCTCTCAAGCGCACTCACCGCAAGAACAGGGTCCCAATTAACCAACTCAA GCACCCTCCTCCCATCACTCTCCACCACAACCCGGAAAAACCCCGGGTACTTCGCGACCCGGTCGCGAAAATCATGGGGG ATTCCAAAAAGGGTTCTACAATGGTGAATCTTACTCAAAGCAATTCGGTTACGCGCAGACATCATCAGCAACCTCCGAAC CTTGTCAACGCGATCCTTCTCCATGGAGTCCATGATGCATTGCTCCTCGGCGAGGAGATCTTCCATGAGGTCGGTGAACC CGAGCCACATTTTGCCGTCGGAGTGGCGGTAGGTCTGGAAGAGGAGCGGGTGGTCCTGGATGAAGCGGGAGACCTTGCGG CCGCGAGGGAAGCCGAGCTCGCGGTGGAGCTTCCCAGCGTCGTCGAGGCGGAGGACATGCTCCGGCTGGGAGGAGAGGAA CTGCTTCGATTTGGTGACGAACCGGAGGAGTGCGTCCCGGTCGAGGATACGTTCCAGTTCGGCGATGCGGTTGGGTTGTG GTTGGACCGGGTTGGTTCGGGGACTGTGTTTGGGTTTGTGTTTTTTCTTGAGCTTTTTTGGGGTTTTGGTGACTAAGAAG GAGGTGGAAAATGGGGCAGTGAAGAAATTGGGATTAGGGTTCTTAGGGGATAGGGTTTTGGAGGATTTGAAGATGGAGAA GAAGCGCCAAGCCATGGAATCAATCTAAATGATGACTCATCATCAGTTAACAATGGCTATAGGTAGGGTTGTAGAGAAAG CGCATCCTCACAACTTGAAACTAAACGCACGCTGTGATGTTAAAATTGTGTAACAACATTTTTTTAGAGATTAATTTGTA TATGGTCCCGCTAACGTGG
CDS sequence (LotjaGi1g1v0240300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCATGTGTAGGTGTGTGTCTGTTTTGACTGGATGGAAGGAGAAGAACAAGGGCAGCAGCAAACGATATTCAAAAGG GGACCTTCACGCTCCACTTGTAAAAGAACAGCAGCCGAGGATGAGTCGTGATTTGAAGCCAGCCACCCTTGATGTTATAG TCTCCTGTGGTGTCCAGAAGAATTCGAAGTACAATGAGAAGATTATGAATCTTGAGAGTCCTGTGAAGACTGAAGCAGAG GATGCTTATGAGGGAGAAGATGAGCATGAAGATTCACCCTCCATCAAGAGGGAGCTTTCTGATTTTGATCTACAAGCCCA TGAAGCTGTTGCAAGTGAAGGATGCGATCCAGCAGATAAAAAGGTAGAATACCCCAGTTTACATGAAAGCCAAGCCACCA TTCAATTAGAAGACAAATACCATAAATACAGCAAAAAGAGTGTTGATTTAATCCAAAGTGGACATGTCAGTGATCCGGGG ATTGGCAAGGGTGACTTCTGGGCTTCTCCAAAGCTCACGCGATCTTGGTCTAACCTGGAAAGAAGGGATGTACTGAGGAA GACACCTCATCACTTTCCATCTCCAAAGTCACAGTCTTTTGAGGATTTACAGGAATTATCAGTAAATCAGATGGGTGTTC TAGAAAGCCCCAGGTCTGTGATGACAGGCTGCAGTGCTGATAGAGTGATGTTGAAACGGCATTCATCAAGTCATGTTCTC CCTTCTGGAAGTAAAAGATTGTGGTGGAAGTTGTTCCTCTGGAACCACAGAAATATACACAGACCTCAGTTAAGCAAATT ACCACAATCACATCCTGCAAGTGCTGCTTTAAATAGACAATGCGGGTACTCTTCGGACACCCTTGAACCTAAACATGGTA AGGCATGGAGACATGTGGAGTCACCCTCACCTGCGTCATCTTCTGGGGAGTACTTTGCCAAAAGTTTCAATGATAAAAAT ATCGACAACCAAAGGTGGAGCAGATTTCAGAAAGAAAGCACTAGTTTTTGGGCACAAAACCAATGGGTAGCTTTCTCAAC AGAATCCTCCTCCTTTAACAGAGTGGATGAGTGGGTGAGAAATCTCGAAATCCAGCAGACACCTCAGGAGGAGGATTTTG ATCATGACGATATTGGAAGCACTATCTTCCCACCTTCACCTGAAACTGGTAGATCAATGGCAAGAAGCACAACTCAGTTG GTTCGACATCCAGATGCAAATCTTTCAAAGGAAATTCTGATTGCCAATAGCGTGGTACAGTCTCTGAATCCAGCCTCAAC TGTAGCTCACATATCAGGCATTGGAATAAAAGCCATCCCTGCTATTTCACACTTCTCCAGTCTCCGCTCTGTCAATTTGT CAAGCAATTTCATAGTTCACATCACACCTGCATTTCTCCCAAAGGGTATTCATACACTTAATTTGTCAAGAAACAAAATC AGCACCGTTGAGGGCCTCAAAGAATTAACCCGGTTGCGGGTACTTGACCTAAGTTATAATCGTATCTCAAGGATAGGACA AGGGTTATCAAATTGTACACAAATCAAGGAGCTATATCTTGCCGGAAACAAGATAAGTGATGTTGAGGGGCTGCACAGGT TACTGAAGCTAACAGTTCTGGACTTGAGCTTCAACAAGATCACAACAACAAAGGCATTGGGCCAGCTGGTGGCTAACTAC AACACACTTCAGGCTCTGAATCTGCTTGGAAATGCAATTCAAAGGAACATCAATGATGACCAGCTGCGCAAAGCAGTTTG CGGTCTTCTTCCAAAGCTTGTGTACCTGAACAAGCAATCTATCAACCCTCAAAGGGCACGTGAAATACTCACTGATAGTG TAGCCAAAGCTGCACTAGGGAACAGCAACCGAGGCTCTTCCAAAAGAGCACTCAAGAAAGGCAGCCAAGGAGGACCGAGT TCGTCCAGTGTGCATAGAGGCAGTGCTAGTGGTGTCCAGAAAAGTAAACGGTCAAGGAGCCAAACTAAACATCATTAG
Protein sequence (LotjaGi1g1v0240300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMCRCVSVLTGWKEKNKGSSKRYSKGDLHAPLVKEQQPRMSRDLKPATLDVIVSCGVQKNSKYNEKIMNLESPVKTEAE DAYEGEDEHEDSPSIKRELSDFDLQAHEAVASEGCDPADKKVEYPSLHESQATIQLEDKYHKYSKKSVDLIQSGHVSDPG IGKGDFWASPKLTRSWSNLERRDVLRKTPHHFPSPKSQSFEDLQELSVNQMGVLESPRSVMTGCSADRVMLKRHSSSHVL PSGSKRLWWKLFLWNHRNIHRPQLSKLPQSHPASAALNRQCGYSSDTLEPKHGKAWRHVESPSPASSSGEYFAKSFNDKN IDNQRWSRFQKESTSFWAQNQWVAFSTESSSFNRVDEWVRNLEIQQTPQEEDFDHDDIGSTIFPPSPETGRSMARSTTQL VRHPDANLSKEILIANSVVQSLNPASTVAHISGIGIKAIPAISHFSSLRSVNLSSNFIVHITPAFLPKGIHTLNLSRNKI STVEGLKELTRLRVLDLSYNRISRIGQGLSNCTQIKELYLAGNKISDVEGLHRLLKLTVLDLSFNKITTTKALGQLVANY NTLQALNLLGNAIQRNINDDQLRKAVCGLLPKLVYLNKQSINPQRAREILTDSVAKAALGNSNRGSSKRALKKGSQGGPS SSSVHRGSASGVQKSKRSRSQTKHH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 36 | 663 | 628 | 1.1E-194 | – | |
| PANTHER | 36 | 663 | 628 | 1.1E-194 | – | |
| MobiDBLite | 75 | 94 | 20 | - | – | |
| MobiDBLite | 372 | 392 | 21 | - | – | |
| Gene3D | 416 | 505 | 90 | 1.3E-17 | ||
| SUPERFAMILY | 434 | 601 | 168 | 3.92E-33 | – | |
| SMART | 445 | 467 | 23 | 65.0 | ||
| Pfam | 446 | 502 | 57 | 3.1E-9 | ||
| ProSiteProfiles | 447 | 467 | 21 | 6.31 | ||
| SMART | 467 | 488 | 22 | 190.0 | – | |
| ProSiteProfiles | 469 | 490 | 22 | 8.051 | ||
| SMART | 489 | 511 | 23 | 0.59 | – | |
| SMART | 489 | 512 | 24 | 0.0042 | ||
| ProSiteProfiles | 491 | 513 | 23 | 8.151 | ||
| Gene3D | 506 | 606 | 101 | 1.1E-18 | ||
| SMART | 512 | 533 | 22 | 8.3 | – | |
| ProSiteProfiles | 514 | 535 | 22 | 8.143 | ||
| Pfam | 514 | 549 | 36 | 3.1E-6 | ||
| SMART | 534 | 555 | 22 | 31.0 | – | |
| SMART | 534 | 556 | 23 | 63.0 | ||
| ProSiteProfiles | 536 | 557 | 22 | 7.712 | ||
| ProSiteProfiles | 562 | 583 | 22 | 5.587 | ||
| MobiDBLite | 620 | 656 | 37 | - | – | |
| MobiDBLite | 620 | 665 | 46 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0240300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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